genome.fa.s11.2.7.7.80.10.50.1000.359.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  359  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104318521--104318655	39	3.4	39	75	6	121	24	20	27	28	1.99
104318778--104318818	19	2.2	19	87	12	59	46	0	24	29	1.53
104321914--104321944	13	2.4	13	94	0	53	90	3	6	0	0.55
104321949--104321997	23	2.1	23	85	7	64	34	14	4	46	1.63
104321948--104322005	22	2.6	22	78	13	57	36	13	5	44	1.66
104337449--104337484	18	2.0	18	88	0	54	8	25	41	25	1.83
104340009--104340063	5	11.0	5	81	14	69	80	0	0	20	0.72
104340012--104340060	6	8.5	6	77	22	52	81	0	0	18	0.69
104348417--104348463	24	2.0	23	83	4	58	55	2	10	31	1.46
104351755--104351819	21	3.2	21	72	12	73	12	26	21	40	1.88
104351737--104351820	39	2.2	39	91	0	132	13	27	22	36	1.91
104351752--104351835	39	2.2	40	82	6	109	14	25	23	36	1.92
104354923--104354965	21	2.1	20	82	4	50	32	25	13	27	1.94
104355634--104356024	75	5.3	75	84	4	479	33	21	19	24	1.97
104360749--104360791	3	14.7	3	95	4	79	69	0	0	30	0.88
104367484--104367597	31	3.5	31	65	19	79	61	3	9	25	1.43
104367485--104367623	70	2.0	70	98	0	269	59	2	10	27	1.44
104368710--104368749	20	2.1	19	85	4	53	32	12	5	50	1.62
104370092--104370195	24	4.2	24	72	10	77	36	20	22	21	1.95
104371485--104371540	26	2.2	26	100	0	112	30	7	26	35	1.83
104373481--104373621	70	2.0	70	97	0	264	26	36	6	31	1.81
104374635--104374665	13	2.4	13	100	0	62	51	16	6	25	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104376790--104376818	5	6.0	5	92	8	51	82	0	0	17	0.66
104377953--104378067	44	2.6	44	85	2	149	35	13	22	27	1.92
104377953--104378086	46	3.0	45	82	4	153	35	14	23	26	1.93
104383907--104384021	44	2.6	44	85	2	149	35	13	22	27	1.92
104383907--104384040	46	3.0	45	82	4	153	35	14	23	26	1.93
104385385--104385492	26	4.2	26	95	0	198	29	6	26	37	1.82
104388531--104388570	21	1.9	21	89	0	62	7	15	5	72	1.24
104389291--104389339	6	8.3	6	82	11	57	44	0	2	53	1.12
104389290--104389339	17	2.9	17	85	11	66	44	0	2	54	1.11
104389268--104389352	23	3.6	23	73	13	66	44	1	3	50	1.26
104391470--104391542	32	2.2	34	79	13	82	35	10	1	52	1.46
104391627--104391666	16	2.4	16	88	12	55	35	5	5	55	1.44
104391663--104391735	30	2.4	30	76	0	83	30	4	1	64	1.20
104393747--104393786	8	5.0	8	96	0	71	47	0	0	52	1.00
104394413--104394445	2	17.0	2	93	6	59	48	0	0	51	1.00
104398680--104398704	5	5.0	5	100	0	50	80	0	0	20	0.72
104399238--104399268	10	3.0	10	90	9	53	87	0	12	0	0.55
104401854--104401901	20	2.5	20	89	3	71	66	2	6	25	1.26
104401854--104401901	10	4.9	10	76	2	53	66	2	6	25	1.26
104407076--104407113	2	19.0	2	94	0	67	52	0	0	47	1.00
104407859--104407951	46	2.0	46	91	0	150	35	20	12	31	1.90
104409328--104409371	22	2.0	22	86	0	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104409449--104409520	15	4.6	15	73	18	58	50	1	1	47	1.18
104415340--104415413	35	2.1	34	87	7	105	50	13	0	36	1.42
104422768--104422802	18	1.9	18	88	0	52	22	17	14	45	1.84
104422946--104422984	6	6.5	6	93	0	69	48	12	17	20	1.80
104423313--104423384	37	1.9	37	81	15	87	40	19	1	38	1.60
104424086--104424119	11	3.1	11	82	0	50	5	14	2	76	1.09
104428301--104428528	46	5.0	46	92	1	332	39	15	24	21	1.92
104438229--104438291	27	2.3	27	83	0	72	39	6	39	14	1.71
104445329--104445369	21	2.0	21	85	9	57	31	19	4	43	1.72
104445676--104445701	13	2.0	13	100	0	52	38	15	0	46	1.46
104459117--104459176	6	10.0	6	77	16	54	76	3	1	18	1.00
104462701--104462806	42	2.5	43	89	4	153	33	27	15	24	1.95
104462701--104462826	43	2.9	43	83	9	159	33	26	15	24	1.95
104468450--104468489	20	2.0	20	90	9	64	15	17	17	50	1.79
104470429--104470454	12	2.2	12	100	0	52	61	7	0	30	1.24
104470488--104470539	6	8.8	6	82	4	70	78	1	1	17	0.93
104470492--104470539	17	2.8	17	87	9	62	79	2	2	16	0.93
104474321--104474383	31	2.0	31	90	0	99	23	22	15	38	1.93
104474577--104474697	24	5.0	24	81	10	131	30	20	18	30	1.96
104474568--104474697	49	2.7	48	82	10	158	30	20	16	32	1.95
104474746--104474812	20	3.3	20	89	0	107	31	20	13	34	1.92
104477985--104478030	24	1.9	24	82	8	58	30	30	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104485118--104485175	29	2.0	29	100	0	116	37	24	6	31	1.82
104485862--104485907	24	1.9	24	82	8	58	30	30	15	23	1.95
104485978--104486008	2	15.5	2	93	0	53	48	0	3	48	1.17
104494878--104495118	39	6.2	39	91	1	326	21	20	30	27	1.98
104494878--104495183	78	3.9	78	85	5	302	21	21	30	26	1.98
104495011--104495183	39	4.4	39	88	2	224	20	24	30	24	1.99
104494892--104495147	117	2.2	117	81	6	270	21	21	30	26	1.98
104498558--104498729	75	2.4	75	83	8	205	32	11	23	33	1.90
104498561--104498727	35	4.6	35	84	9	167	32	11	23	32	1.90
104498657--104498727	36	2.0	35	88	2	106	33	14	21	30	1.92
104500171--104500233	31	2.0	31	87	0	90	26	23	12	36	1.91
104500427--104500572	50	3.0	49	86	8	201	28	21	20	30	1.98
104500427--104500572	24	6.0	24	87	8	199	28	21	20	30	1.98
104500621--104500687	20	3.3	20	87	0	98	31	22	13	32	1.92
104508333--104508380	17	2.8	17	84	12	62	77	8	2	12	1.08
104517644--104517847	87	2.3	90	76	8	213	31	10	15	42	1.81
104517815--104517901	43	2.0	43	100	0	174	32	18	22	26	1.97
104519613--104519733	3	40.3	3	71	12	70	31	6	4	57	1.43
104528894--104528929	18	2.0	18	100	0	72	27	22	27	22	1.99
104532053--104532353	45	6.8	44	69	10	146	29	16	26	26	1.97
104532276--104532447	45	3.8	45	73	3	114	31	19	20	27	1.97
104533634--104533751	3	39.3	3	72	13	73	31	5	4	58	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104533668--104533761	21	4.2	21	71	15	66	31	7	4	56	1.46
104534600--104534663	32	2.0	32	100	0	128	34	12	12	40	1.81
104538829--104538873	4	11.0	4	90	4	72	28	0	0	71	0.87
104543678--104543720	13	3.5	13	81	18	65	48	16	0	34	1.46
104543676--104543722	23	2.0	23	100	0	94	46	17	0	36	1.48
104548388--104548450	31	2.0	31	100	0	126	36	12	19	31	1.89
104550072--104550183	48	2.3	47	85	8	145	34	9	4	50	1.55
104550199--104550242	23	1.9	23	81	9	54	34	4	6	54	1.47
104551794--104551836	18	2.4	18	92	0	68	20	27	9	41	1.83
104555320--104555661	126	2.7	126	91	1	542	27	20	18	33	1.96
104556987--104557256	132	2.0	132	94	0	477	37	17	12	31	1.88
104559851--104559886	17	2.1	17	90	10	56	61	0	2	36	1.11
104559858--104559910	11	4.7	12	77	11	58	60	0	1	37	1.08
104565200--104565242	21	2.0	21	95	0	77	39	13	4	41	1.66
104565836--104565947	50	2.2	50	91	0	188	45	8	16	29	1.76
104566096--104566141	20	2.3	20	88	3	67	34	0	0	65	0.93
104566229--104566253	13	1.9	13	100	0	50	64	0	12	24	1.27
104568129--104568241	60	1.9	60	83	3	147	49	24	4	21	1.67
104568224--104568357	27	4.8	27	72	6	88	53	29	2	14	1.53
104573239--104573512	46	6.0	46	93	0	406	21	24	14	38	1.92
104582853--104582929	21	3.7	21	100	0	154	10	33	29	25	1.89
104584206--104584241	18	2.0	18	88	0	54	27	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104584441--104585292	156	5.5	155	88	4	1141	35	23	20	21	1.96
104589353--104589382	8	3.6	8	91	8	51	13	10	0	76	1.01
104589721--104589768	23	2.0	24	96	4	89	43	2	8	45	1.45
104591861--104591885	2	12.5	2	100	0	50	52	0	0	48	1.00
104593494--104593545	24	2.2	24	89	0	77	50	9	3	36	1.54
104598885--104598919	18	1.9	18	94	0	61	80	5	0	14	0.89
104598884--104598926	18	2.3	18	80	4	59	72	4	6	16	1.24
104600459--104600686	46	5.0	46	92	1	341	20	24	15	40	1.90
104602824--104602876	11	4.7	11	75	13	54	64	3	0	32	1.12
104602824--104602889	34	2.0	33	82	8	82	59	4	0	36	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427