Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  380  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110513130--110513183
18
2.9
18
86
2
72
40
3
0
55
1.17
110519038--110519095
30
1.9
30
89
0
89
37
5
5
51
1.46
110521327--110521379
26
2.0
26
100
0
106
50
0
18
30
1.47
110522574--110522629
21
2.6
22
80
11
71
41
0
0
58
0.98
110522574--110522638
10
6.3
10
72
12
51
41
0
0
58
0.98
110523301--110523325
4
6.2
4
100
0
50
76
0
24
0
0.80
110524089--110524199
47
2.4
47
84
6
154
25
16
23
35
1.95
110525361--110525399
2
19.0
2
94
5
69
48
0
2
48
1.15
110534768--110534918
53
2.8
53
89
4
214
25
16
27
29
1.97
110541407--110541552
53
2.7
53
89
4
204
27
15
27
29
1.96
110544090--110544131
3
13.7
3
85
5
57
64
2
0
33
1.07
110546195--110546238
23
1.9
23
85
0
61
29
2
6
61
1.34
110548824--110548954
35
3.6
35
76
11
120
34
22
9
32
1.87
110550360--110550412
5
10.0
5
80
11
61
41
0
1
56
1.10
110550357--110550413
8
6.6
9
74
22
59
43
0
1
54
1.10
110550358--110550413
12
4.5
12
81
16
69
42
0
1
55
1.10
110551731--110551769
18
2.1
19
90
4
62
41
0
10
48
1.37
110553525--110553560
13
2.8
14
84
16
51
27
25
0
47
1.52
110553512--110553552
18
2.2
19
87
12
59
29
24
0
46
1.53
110553675--110553809
39
3.4
38
73
8
101
28
28
20
23
1.99
110554048--110554086
18
2.1
19
90
4
62
48
10
0
41
1.37
110555397--110555449
5
10.0
5
80
11
61
56
1
0
41
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110555396--110555451
12
4.5
12
81
16
69
55
1
0
42
1.10
110560333--110560368
14
2.6
14
86
0
54
63
11
11
13
1.51
110564912--110564946
2
18.0
2
94
5
63
48
0
0
51
1.00
110568772--110568879
26
4.2
26
96
0
198
36
25
6
31
1.82
110577646--110577911
46
6.0
45
83
8
321
22
23
15
39
1.91
110577819--110577896
38
2.1
37
97
2
147
21
21
17
38
1.93
110579952--110580003
11
4.7
11
76
9
52
63
3
0
32
1.12
110582891--110582998
26
4.2
26
95
0
189
36
26
6
30
1.82
110583669--110583693
12
2.1
12
100
0
50
76
0
8
16
1.02
110585363--110586125
96
8.3
96
78
9
519
28
20
17
33
1.96
110585549--110585804
51
5.3
51
68
16
164
27
18
17
35
1.94
110585679--110586567
89
9.9
88
73
10
444
28
21
16
33
1.95
110585795--110586568
133
5.8
134
80
4
510
29
21
16
32
1.95
110585417--110586576
44
25.5
44
72
10
521
29
20
17
33
1.95
110585901--110586493
318
1.9
317
82
2
751
29
21
15
32
1.95
110588622--110588688
33
2.0
33
97
0
125
20
31
8
38
1.84
110590504--110590542
14
2.8
14
84
0
51
23
0
30
46
1.53
110590958--110591032
19
4.0
20
76
15
70
74
4
2
18
1.09
110591003--110591034
15
2.1
15
94
0
55
84
0
0
15
0.63
110591608--110591654
23
2.0
23
92
8
78
21
8
14
55
1.66
110594825--110594852
12
2.3
12
100
0
56
46
7
0
46
1.30
110600898--110601079
46
4.0
46
86
1
240
41
14
21
21
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110605620--110605757
40
3.5
40
86
0
195
29
12
21
36
1.90
110608067--110608120
19
2.8
20
83
5
67
44
9
18
27
1.80
110608769--110608838
30
2.3
31
80
2
79
45
4
20
30
1.70
110610891--110611195
46
6.6
46
90
0
439
42
14
23
19
1.88
110622231--110622262
10
3.3
10
95
4
57
31
0
6
62
1.20
110628683--110628854
75
2.4
74
83
8
210
31
11
23
33
1.90
110628686--110628852
35
4.6
35
83
9
167
31
11
23
32
1.91
110628782--110628852
36
2.0
35
88
2
106
33
14
21
30
1.92
110636176--110636347
75
2.4
74
84
11
216
31
11
23
33
1.90
110636181--110636345
35
4.6
35
84
9
174
31
11
23
33
1.90
110639950--110640118
74
2.4
73
84
6
204
32
10
23
33
1.89
110639953--110640116
35
4.6
34
82
10
168
32
10
23
33
1.89
110641951--110641982
2
16.0
2
100
0
64
50
0
0
50
1.00
110642074--110642100
2
13.5
2
100
0
54
48
0
0
51
1.00
110643972--110644026
23
2.4
23
96
0
101
56
10
0
32
1.34
110645112--110645205
49
1.9
49
82
8
120
27
4
3
64
1.27
110645739--110645805
34
2.1
31
86
8
89
68
7
5
17
1.34
110646602--110646674
23
3.3
23
70
14
62
68
1
1
28
1.06
110646599--110646654
16
3.5
15
80
11
58
71
0
0
28
0.86
110646627--110646671
18
2.4
19
81
7
56
64
2
2
31
1.18
110648681--110648759
13
6.1
13
72
5
52
37
7
21
32
1.82
110652764--110652810
25
1.9
24
86
4
67
42
2
10
44
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110662664--110662688
11
2.3
11
100
0
50
0
0
8
92
0.40
110663459--110663499
8
5.5
8
77
16
52
39
0
0
60
0.96
110663479--110663527
19
2.7
18
81
12
55
42
2
0
55
1.11
110663459--110663516
27
2.1
28
84
12
75
39
1
0
58
1.08
110672480--110672520
2
21.0
2
90
5
66
51
0
0
48
1.00
110672836--110672862
2
13.5
2
100
0
54
51
0
0
48
1.00
110673198--110673283
9
9.4
9
72
13
52
19
0
4
75
0.97
110673198--110673258
18
3.3
19
76
17
65
19
0
4
75
0.98
110673198--110673241
20
2.2
20
88
11
65
20
0
2
77
0.88
110673199--110673283
36
2.3
36
80
9
93
20
0
4
75
0.98
110681070--110681117
23
2.1
23
92
3
80
75
18
2
4
1.07
110681499--110681546
17
2.7
18
77
3
53
8
31
52
8
1.61
110681922--110681966
11
4.1
11
82
0
54
35
0
4
60
1.17
110682126--110682177
21
2.6
20
79
11
54
36
3
5
53
1.43
110682082--110682365
151
1.9
153
79
9
330
30
5
6
57
1.47
110692172--110692363
67
3.0
65
78
13
236
27
17
25
30
1.97
110692295--110692485
75
2.5
75
84
9
255
32
17
20
28
1.96
110698461--110698502
21
2.0
20
82
13
50
33
4
7
54
1.49
110708184--110708217
17
1.9
18
88
5
52
44
29
20
5
1.75
110708513--110708708
61
3.0
67
74
15
212
27
17
25
29
1.97
110708785--110709226
78
5.8
76
83
7
508
31
16
20
31
1.94
110709980--110710038
17
3.4
17
69
4
55
76
15
5
3
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110710495--110710544
22
2.3
22
82
0
55
0
42
0
58
0.98
110710847--110710890
11
3.8
11
84
6
52
38
0
4
56
1.20
110712570--110712597
8
3.5
8
100
0
56
89
0
10
0
0.49
110712772--110712812
14
2.9
14
82
17
57
46
0
2
51
1.14
110715566--110715596
6
5.2
6
96
0
53
32
32
35
0
1.58
110722071--110722197
27
4.7
26
78
9
114
17
18
25
37
1.93
110729393--110729435
21
2.0
21
82
8
52
37
4
0
58
1.19
110757516--110757578
32
2.0
32
90
0
99
33
25
14
26
1.94
110758889--110758966
35
2.4
33
82
8
97
41
11
16
30
1.84
110760314--110760351
20
1.9
20
84
10
51
26
26
0
47
1.52
110762401--110762431
8
3.9
8
95
0
53
29
12
6
51
1.65
110762644--110762692
21
2.3
21
92
0
80
44
26
6
22
1.76
110763903--110763933
15
2.1
15
93
0
53
19
32
12
35
1.90
110765149--110765432
135
2.1
136
97
0
543
31
25
18
24
1.98
110767218--110767358
26
5.2
26
88
8
210
36
25
4
32
1.78
110767234--110767352
57
2.1
57
98
0
229
36
27
5
30
1.78
110769500--110769589
45
2.0
46
91
2
146
38
12
7
41
1.71
110771212--110771670
46
10.0
47
90
2
614
22
25
15
37
1.93
110773812--110773863
11
4.7
11
76
9
52
63
3
0
32
1.12
110775152--110775199
20
2.5
20
86
3
62
64
2
6
27
1.28
110775580--110775617
19
1.9
20
89
10
60
28
21
0
50
1.49
110775759--110775797
20
2.0
21
90
10
64
20
30
0
48
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110778148--110778319
75
2.4
73
83
8
217
33
23
11
31
1.90
110778153--110778319
35
4.6
35
86
7
192
33
23
10
31
1.89
110781769--110782072
39
7.8
39
94
0
518
19
24
28
27
1.98
110790963--110790993
1
31.0
1
100
0
62
0
0
0
100
0.00
110791642--110791674
11
2.9
12
86
13
52
33
0
0
66
0.92
110792858--110792900
21
2.0
21
100
0
86
25
9
18
46
1.79
110797438--110797468
15
2.1
15
100
0
62
22
19
32
25
1.97
110799169--110799202
5
6.8
5
93
0
59
41
14
0
44
1.45
110799594--110799619
11
2.4
11
100
0
52
15
7
0
76
0.99
110800963--110801101
40
3.5
40
74
6
122
30
26
16
26
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427