Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  361  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104869795--104869863
5
12.8
5
74
17
50
73
1
1
23
0.99
104869802--104869864
24
2.6
25
78
12
69
73
1
1
23
1.01
104869797--104869863
29
2.2
30
86
5
91
74
1
1
22
0.98
104869895--104869929
14
2.4
14
85
4
52
71
0
5
22
1.07
104870014--104870155
3
47.0
3
87
4
160
58
0
5
35
1.22
104873790--104873817
11
2.5
11
100
0
56
17
10
10
60
1.57
104874838--104874868
2
15.5
2
100
0
62
48
0
0
51
1.00
104875312--104875403
40
2.3
40
83
5
114
31
10
19
38
1.86
104878244--104878287
5
8.8
5
80
9
54
22
0
0
77
0.77
104878974--104879015
22
2.0
22
86
13
61
35
0
2
61
1.09
104881138--104881181
22
2.0
22
86
0
61
52
0
0
47
1.00
104881201--104881241
13
2.9
15
79
20
52
58
0
0
41
0.98
104881274--104881330
15
3.5
15
71
17
51
47
1
1
49
1.22
104884057--104884111
25
2.3
23
78
12
58
43
3
16
36
1.65
104884173--104884239
24
2.9
24
80
4
75
58
4
5
31
1.42
104884362--104884393
15
2.1
15
94
0
55
71
0
0
28
0.86
104884663--104884701
16
2.4
16
86
0
51
43
28
5
23
1.75
104884864--104884922
29
2.0
29
96
0
109
18
6
49
25
1.72
104885548--104885942
87
4.5
88
80
9
375
35
18
15
29
1.93
104886040--104886640
146
4.1
146
89
4
781
33
20
15
30
1.94
104886040--104886640
74
8.2
74
86
4
792
33
20
15
30
1.94
104886034--104886620
219
2.7
219
92
3
934
32
20
16
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104886807--104886852
13
3.6
14
80
13
55
67
4
10
17
1.37
104886645--104886996
98
3.7
100
85
7
430
36
20
18
24
1.94
104886823--104886996
90
2.0
88
86
5
246
36
20
18
24
1.95
104899500--104899536
10
3.6
10
92
3
56
89
2
2
5
0.66
104900438--104900593
83
1.9
83
84
0
213
33
17
19
29
1.95
104900521--104901073
119
4.6
119
93
0
901
33
19
20
27
1.97
104900997--104901182
83
2.2
83
91
0
291
33
18
18
29
1.95
104903009--104903056
18
2.6
19
80
12
55
25
2
6
66
1.26
104907356--104907409
13
4.1
14
73
17
53
24
0
7
68
1.15
104908472--104908542
32
2.2
32
85
5
90
32
8
7
52
1.59
104910264--104910324
24
2.4
25
76
15
63
29
3
8
59
1.43
104912765--104912820
28
2.0
28
82
0
67
33
3
21
41
1.70
104912775--104912851
28
2.6
30
88
10
115
27
5
18
49
1.68
104915087--104915118
16
2.0
16
93
0
55
50
6
21
21
1.71
104915222--104915264
16
2.8
15
86
6
59
62
0
6
30
1.21
104915361--104915399
3
13.0
3
100
0
78
66
0
0
33
0.92
104915499--104915549
3
17.0
3
100
0
102
66
0
0
33
0.92
104918008--104918038
15
2.1
15
100
0
62
6
38
0
54
1.26
104918082--104918131
15
3.5
14
79
15
50
42
8
24
26
1.82
104919601--104919648
3
16.0
3
100
0
96
33
0
0
66
0.92
104919746--104919788
16
2.8
15
86
6
59
30
6
0
62
1.21
104919893--104919924
16
2.0
16
93
0
55
21
21
6
50
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104919924--104920180
3
85.3
3
69
13
136
31
7
2
57
1.40
104920145--104920212
21
3.0
21
76
10
64
23
5
7
63
1.43
104928692--104929177
205
2.4
205
91
1
776
31
18
21
29
1.97
104929319--104929560
44
5.5
44
77
9
201
32
16
26
24
1.96
104929295--104929553
88
2.9
88
69
13
235
30
16
25
26
1.97
104929752--104929786
18
1.9
18
88
0
52
88
5
2
2
0.68
104930015--104930070
28
2.0
28
82
0
67
33
3
21
41
1.70
104930025--104930101
28
2.7
29
89
4
120
25
6
19
48
1.73
104930559--104930773
3
69.7
3
75
18
153
30
1
4
63
1.24
104930621--104930676
28
2.1
26
83
6
67
32
1
8
57
1.40
104930820--104930855
14
2.6
14
90
0
54
5
8
2
83
0.89
104939063--104939142
42
2.0
40
85
9
108
23
23
37
15
1.93
104949427--104949510
26
3.2
26
96
0
150
36
25
4
33
1.77
104950397--104950545
43
3.5
43
77
5
149
33
28
14
24
1.94
104956622--104957028
45
9.1
44
88
3
548
27
28
20
24
1.99
104959578--104959614
18
2.1
18
90
5
58
32
18
5
43
1.73
104960319--104960348
15
2.0
15
93
0
51
56
6
23
13
1.60
104967753--104967810
30
1.9
30
93
6
100
15
29
34
20
1.94
104969733--104969821
40
2.2
40
82
9
110
34
22
20
22
1.96
104969909--104970054
40
3.7
40
81
7
147
30
22
16
30
1.96
104970103--104970209
40
2.7
39
81
7
117
26
23
19
30
1.98
104969733--104970255
193
2.7
193
82
5
542
30
20
18
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104970458--104970502
22
2.0
22
82
0
54
22
0
33
44
1.53
104970463--104970497
15
2.4
15
90
4
54
20
0
34
45
1.51
104970503--104970551
21
2.3
21
83
13
57
18
0
44
36
1.50
104970552--104970622
7
10.0
7
79
8
63
18
2
29
49
1.62
104970567--104970627
21
3.0
20
83
11
70
21
0
27
50
1.49
104970503--104970623
7
17.0
7
71
12
50
18
1
36
43
1.60
104970717--104970812
7
13.4
7
70
8
59
23
0
27
48
1.51
104970722--104970815
22
4.4
22
76
7
77
23
0
29
46
1.52
104970771--104970818
15
3.3
15
82
5
62
20
0
33
45
1.52
104970807--104970839
14
2.3
15
89
5
50
15
3
45
36
1.61
104970800--104970846
21
2.2
21
84
3
58
14
2
44
38
1.58
104971637--104971682
14
3.3
14
93
0
74
82
0
0
17
0.67
104971628--104971682
21
2.6
21
88
0
74
76
0
0
23
0.79
104971630--104971687
7
8.1
7
86
9
55
75
1
0
22
0.89
104975079--104975108
15
2.1
14
93
6
51
53
0
6
40
1.27
104975133--104975162
15
1.9
16
93
6
53
56
3
6
33
1.42
104976573--104976897
43
7.6
43
77
9
279
28
15
26
29
1.96
104976587--104976894
128
2.4
127
81
5
352
28
16
26
28
1.97
104976587--104976897
86
3.6
86
82
2
360
27
16
27
28
1.97
104979546--104979612
21
3.3
21
64
16
59
41
14
2
40
1.62
104979543--104979623
40
2.0
40
100
0
162
45
14
2
37
1.59
104985912--104986019
26
4.2
26
93
0
189
32
7
24
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104987612--104987752
27
5.2
26
84
10
176
17
24
23
34
1.96
104987612--104987752
54
2.6
53
92
2
219
17
24
23
34
1.96
104992719--104993042
137
2.4
137
86
1
425
21
24
15
38
1.92
104992724--104993042
46
7.0
46
90
1
408
21
24
15
39
1.91
104995214--104995250
20
1.9
20
88
5
58
51
8
0
40
1.32
104999118--104999209
27
3.4
27
86
0
121
36
18
19
25
1.94
105006167--105006256
27
3.3
27
88
0
126
36
16
21
25
1.94
105006982--105007013
2
16.0
2
100
0
64
50
0
0
50
1.00
105009713--105009795
42
2.0
42
80
7
96
36
21
16
25
1.94
105012337--105012491
43
3.7
42
76
10
163
25
18
27
29
1.98
105018022--105018069
21
2.3
21
100
0
96
29
29
20
20
1.98
105018022--105018078
21
2.7
21
91
2
78
28
28
21
22
1.99
105053384--105053518
43
3.1
42
80
7
121
32
27
16
23
1.96
105053414--105053518
42
2.4
43
82
3
122
34
29
15
20
1.94
105054477--105054505
14
2.1
14
100
0
58
58
13
0
27
1.36
105054993--105055034
20
2.1
20
100
0
84
33
19
14
33
1.91
105057096--105057175
35
2.3
35
95
0
142
37
16
12
33
1.86
105057532--105057591
20
3.0
20
85
7
86
43
23
20
13
1.86
105058726--105058793
31
2.2
31
89
7
104
32
17
17
32
1.94
105060372--105060401
15
2.0
15
93
0
51
36
13
26
23
1.92
105061628--105061727
50
2.0
50
100
0
200
40
12
6
42
1.67
105065978--105066207
115
2.0
115
99
0
451
28
28
10
33
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105070454--105070549
33
2.9
33
95
0
174
38
32
10
18
1.85
105070948--105071024
38
2.0
38
97
0
145
35
14
2
48
1.58
105070959--105071019
19
3.2
19
66
25
56
34
13
3
49
1.58
105075103--105075165
32
2.0
31
96
3
117
50
6
1
41
1.37
105079565--105079622
5
11.8
5
98
1
109
41
0
0
58
0.98
105082189--105082426
49
4.8
49
81
2
251
26
16
26
30
1.97
105082189--105082413
101
2.3
98
83
2
279
26
16
26
31
1.97
105084467--105084505
16
2.4
16
78
0
51
7
30
15
46
1.74
105087119--105087202
28
3.0
28
96
0
159
26
28
16
28
1.97
105094088--105094206
29
4.2
29
81
2
134
29
26
14
29
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427