genome.fa.s11.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  169  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47066396--47066582	80	2.3	80	81	8	211	25	22	26	25	2.00
47066432--47066586	40	3.9	40	80	3	177	24	23	26	25	2.00
47074561--47074662	40	2.6	40	84	1	116	23	25	27	23	2.00
47076683--47076747	19	3.3	21	72	16	75	41	12	20	26	1.87
47076683--47076759	38	2.0	38	97	0	145	41	11	18	28	1.85
47076697--47076758	19	3.3	19	72	17	65	38	11	19	30	1.87
47077138--47077248	57	2.0	57	83	5	145	27	28	15	27	1.96
47077135--47077246	28	4.0	29	87	2	131	28	28	15	27	1.96
47083042--47083077	16	2.3	16	90	4	56	13	22	5	58	1.56
47088278--47088312	17	2.1	17	94	0	61	48	8	14	28	1.73
47090669--47090713	23	1.9	23	86	4	63	28	48	2	20	1.61
47090963--47091015	27	2.0	27	84	0	70	41	15	16	26	1.88
47091242--47091284	20	2.2	19	87	4	59	20	41	23	13	1.88
47097891--47098072	27	6.7	27	86	3	217	25	12	19	42	1.87
47097895--47098072	81	2.2	81	87	2	250	24	12	20	42	1.87
47100220--47100265	21	2.3	20	78	14	51	30	6	17	45	1.73
47107008--47107189	39	4.6	39	88	0	229	22	31	23	23	1.99
47107038--47107189	39	3.9	39	91	0	232	23	31	22	23	1.98
47118678--47118707	11	2.7	11	100	0	60	26	0	6	66	1.16
47120149--47120435	49	5.8	49	83	3	324	25	18	27	28	1.98
47120144--47120430	150	1.9	149	87	2	423	25	19	27	28	1.98
47123441--47123496	29	2.0	26	86	10	76	8	14	17	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47125631--47125763	49	2.6	51	84	5	182	26	18	27	27	1.98
47127415--47127545	30	4.5	30	86	8	171	32	13	25	28	1.94
47127415--47127545	58	2.2	58	86	4	174	32	13	25	28	1.94
47135351--47135481	30	4.5	30	86	8	171	32	13	25	28	1.94
47135351--47135481	58	2.2	58	86	4	174	32	13	25	28	1.94
47141387--47141464	25	3.2	25	66	23	76	32	30	3	33	1.76
47141336--47141652	47	6.7	47	86	7	433	29	31	7	32	1.84
47141336--47141652	96	3.3	94	87	6	442	29	31	7	32	1.84
47145263--47145429	40	4.2	40	82	2	185	24	26	22	26	2.00
47149334--47149464	29	4.6	29	84	7	162	26	15	31	26	1.96
47149332--47149464	57	2.3	57	84	6	171	27	15	30	27	1.96
47157378--47157512	29	4.6	29	81	7	148	28	14	30	26	1.95
47157378--47157510	60	2.3	58	82	5	151	27	15	30	27	1.96
47162928--47163096	44	3.6	46	69	14	123	27	20	28	23	1.99
47165344--47165371	12	2.3	12	100	0	56	39	7	7	46	1.59
47165462--47165514	13	4.1	13	87	0	79	35	20	7	35	1.81
47165451--47165506	26	2.2	26	83	6	69	33	19	5	41	1.74
47169041--47169200	29	5.5	29	82	4	171	25	16	31	26	1.97
47170838--47170932	43	2.2	44	85	9	126	31	27	17	23	1.97
47172265--47172315	25	2.0	25	100	0	102	37	23	0	39	1.55
47179676--47179722	23	2.0	23	100	0	94	34	21	8	36	1.84
47181360--47181428	28	2.5	28	78	0	84	33	5	11	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47181444--47181485	5	8.4	5	94	0	75	57	0	0	42	0.99
47181867--47181937	36	2.0	36	94	0	124	29	7	19	43	1.77
47184332--47184369	19	1.9	20	89	10	60	36	7	13	42	1.73
47197227--47197302	25	3.0	24	82	5	89	18	26	18	36	1.94
47197231--47197309	26	3.1	26	89	7	117	18	25	18	36	1.94
47209283--47209308	3	8.7	3	100	0	52	69	0	30	0	0.89
47211144--47211180	18	2.1	18	94	0	65	45	13	10	29	1.77
47212108--47212145	2	19.0	2	100	0	76	50	0	0	50	1.00
47212700--47212769	28	2.5	28	88	9	99	27	14	27	31	1.95
47224782--47224820	13	3.0	13	88	0	51	23	25	33	17	1.96
47230198--47230458	46	5.7	46	80	7	305	23	19	27	29	1.98
47237844--47238109	46	5.7	46	77	9	265	22	19	27	30	1.98
47237841--47238010	93	1.8	93	93	0	295	21	20	28	28	1.98
47237845--47238105	139	1.9	139	95	0	477	22	19	27	29	1.98
47239697--47239746	17	3.0	17	82	2	57	20	4	2	74	1.08
47239702--47239742	11	3.6	11	90	9	57	17	4	2	75	1.08
47243041--47243115	6	11.8	6	73	9	60	70	1	21	6	1.17
47245199--47245244	20	2.2	21	88	3	67	17	23	19	39	1.92
47245206--47245258	21	2.6	20	88	5	79	15	22	18	43	1.87
47245209--47245245	10	3.5	11	82	10	51	16	21	21	40	1.91
47257807--47257969	43	3.7	43	89	4	238	31	22	23	22	1.98
47258267--47258310	21	2.1	21	91	8	72	0	54	22	22	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47263740--47263802	7	9.0	7	73	0	54	42	39	1	15	1.57
47264168--47264229	14	4.4	13	80	10	52	48	29	1	20	1.59
47264431--47264492	19	3.0	20	78	19	65	64	3	1	30	1.19
47264716--47264948	74	3.1	74	91	0	367	30	24	18	26	1.98
47264873--47265299	114	3.8	113	88	2	579	26	20	21	31	1.98
47270398--47270717	27	11.9	27	78	8	267	37	19	11	31	1.88
47270390--47270716	108	3.0	108	86	2	426	37	20	11	30	1.89
47274533--47274850	27	11.9	27	76	11	164	37	17	12	33	1.87
47274531--47274850	54	6.0	53	78	9	249	36	17	12	33	1.88
47274560--47274812	53	4.7	52	78	7	206	36	15	13	34	1.86
47274777--47274864	27	3.3	27	77	15	92	40	18	11	29	1.85
47274750--47274864	54	2.1	53	84	9	144	39	16	11	33	1.84
47278685--47278979	27	11.0	27	77	11	229	36	17	14	31	1.90
47278692--47278952	107	2.4	109	86	5	354	36	19	13	30	1.90
47278685--47278980	54	5.5	54	77	11	272	36	17	14	31	1.90
47278685--47278980	81	3.7	81	79	9	295	36	17	14	31	1.90
47280959--47281063	40	2.6	40	87	0	138	21	28	22	26	1.99
47281047--47281078	14	2.3	14	100	0	64	6	31	28	34	1.82
47281007--47281117	54	2.1	54	96	0	204	20	29	23	26	1.99
47281061--47281158	40	2.5	40	84	3	117	23	28	22	25	1.99
47289066--47289257	40	4.7	39	84	8	197	23	27	23	25	2.00
47289101--47289220	44	2.8	44	92	5	194	25	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47289101--47289257	84	1.9	84	87	2	235	25	28	22	23	2.00
47294819--47294985	40	4.2	40	81	2	176	23	26	22	26	2.00
47295809--47295854	17	2.5	19	74	22	53	34	23	17	23	1.96
47302822--47302988	40	4.2	40	82	2	185	24	26	22	26	2.00
47303807--47303852	17	2.5	19	74	22	53	34	23	17	23	1.96
47305156--47305213	29	2.0	29	96	0	107	44	3	18	32	1.67
47310063--47310130	25	2.7	25	93	0	109	25	23	26	25	2.00
47310114--47310147	17	2.0	17	100	0	68	17	29	29	23	1.97
47311080--47311263	27	6.7	27	76	6	129	29	8	20	42	1.80
47311073--47311263	54	3.5	54	80	5	179	30	8	19	41	1.82
47311267--47311385	27	4.4	27	88	4	159	40	6	24	28	1.80
47311267--47311385	54	2.2	54	89	3	177	40	6	24	28	1.80
47313508--47313752	40	6.2	40	90	4	356	26	29	20	23	1.99
47313499--47313751	117	2.1	119	86	2	359	26	29	20	23	1.99
47321688--47321935	40	6.2	40	92	1	383	27	29	20	22	1.99
47326104--47326289	40	4.7	40	86	5	218	25	26	22	25	2.00
47330914--47330955	23	1.9	21	85	9	57	64	2	14	19	1.39
47335575--47335632	30	1.9	30	83	13	75	10	25	37	25	1.88
47336791--47336970	27	6.7	27	88	1	238	41	20	7	31	1.79
47336791--47337014	81	2.8	81	83	6	251	40	19	8	32	1.81
47336953--47337013	27	2.3	27	85	0	86	39	18	9	32	1.83
47336992--47337285	27	10.9	27	87	2	342	27	22	9	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47337154--47337402	27	9.1	27	79	3	95	33	21	10	34	1.87
47337008--47337330	81	4.0	81	80	4	193	29	23	8	38	1.85
47337355--47337410	27	2.1	26	83	9	69	37	10	12	39	1.78
47337464--47337528	27	2.4	27	84	5	87	35	20	24	20	1.96
47338676--47338723	25	1.9	25	86	0	69	33	25	16	25	1.96
47338767--47338825	20	3.0	20	92	0	100	35	11	20	32	1.89
47338876--47339042	24	7.0	24	93	3	257	28	22	22	26	1.99
47338876--47339043	71	2.3	71	90	4	257	29	22	22	26	1.99
47339234--47339328	31	3.1	31	93	0	154	38	15	21	24	1.92
47341301--47341434	67	2.0	67	100	0	268	34	22	14	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427