genome.fa.s11.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  199  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55380646--55380672	11	2.5	11	100	0	54	44	14	0	40	1.46
55387436--55387585	37	4.1	37	96	0	255	27	31	18	22	1.97
55387732--55387866	48	2.8	48	89	0	207	31	28	7	33	1.85
55387836--55388123	47	6.1	47	89	1	434	26	27	11	33	1.91
55392735--55392761	11	2.5	11	100	0	54	44	14	0	40	1.46
55398406--55398472	24	2.8	24	88	0	107	23	23	16	35	1.95
55398382--55398472	48	1.9	48	84	6	123	24	23	16	36	1.94
55410599--55410697	28	3.5	29	82	6	114	28	15	26	30	1.96
55412162--55412412	47	5.2	49	90	4	370	32	8	30	28	1.87
55416602--55416711	27	4.1	26	88	6	148	19	22	21	36	1.95
55434043--55434172	40	3.2	40	82	4	165	23	24	28	23	2.00
55435638--55435724	27	3.3	26	85	4	111	19	21	20	37	1.94
55440185--55440232	25	1.9	25	100	0	96	22	22	4	50	1.67
55444421--55444537	58	2.0	58	98	0	225	31	29	11	27	1.91
55445020--55446355	332	4.0	332	98	0	2555	32	17	11	37	1.86
55449396--55449493	28	3.5	28	84	4	108	29	16	24	29	1.96
55456358--55456524	40	4.2	40	78	6	160	25	22	27	24	2.00
55460292--55460390	28	3.5	28	86	4	119	29	15	25	30	1.95
55470861--55470893	16	2.1	16	94	0	57	48	24	6	21	1.72
55472362--55472465	29	3.6	28	77	2	100	27	16	27	27	1.97
55476633--55476783	40	3.8	40	77	11	141	26	24	27	21	2.00
55476670--55476799	40	3.2	40	79	2	154	23	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55476632--55476799	80	2.1	80	82	6	207	26	23	27	22	2.00
55485728--55485895	40	4.2	40	82	3	178	25	26	22	26	2.00
55488222--55488254	12	2.8	12	95	0	57	12	18	45	24	1.83
55490042--55490351	94	3.3	92	79	6	291	30	20	26	23	1.98
55490224--55490359	49	2.8	49	79	2	157	28	19	27	24	1.98
55493630--55493655	13	2.0	13	100	0	52	23	15	7	53	1.67
55498017--55498065	21	2.2	24	82	17	70	22	8	10	59	1.56
55509698--55509736	19	2.1	19	100	0	78	35	10	5	48	1.59
55513610--55513702	40	2.3	40	87	5	127	25	29	21	23	1.99
55521738--55521830	40	2.3	40	87	5	127	25	29	21	23	1.99
55527362--55527481	64	1.9	64	96	0	222	45	10	19	24	1.82
55529378--55529448	27	2.6	27	79	2	88	12	14	36	36	1.84
55533825--55533865	19	2.2	19	100	0	82	34	9	19	36	1.85
55535952--55535996	2	22.5	2	100	0	90	48	0	0	51	1.00
55536505--55536541	17	2.1	17	90	5	56	75	5	18	0	0.99
55537784--55537890	40	2.7	40	82	0	124	28	22	25	23	1.99
55537825--55537951	40	3.2	39	83	8	141	22	24	29	23	1.99
55544536--55544580	21	2.1	22	83	4	56	73	4	22	0	1.01
55544537--55544573	19	2.1	19	90	10	60	78	5	16	0	0.93
55545793--55545931	38	3.6	38	79	7	120	26	24	27	21	1.99
55545831--55545954	40	3.2	40	84	6	139	23	24	29	23	1.99
55547156--55547190	17	2.1	17	88	0	52	82	5	11	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55548431--55548537	40	2.7	40	82	0	124	28	22	25	23	1.99
55548472--55548598	40	3.2	39	83	8	141	22	24	29	23	1.99
55555200--55555235	16	2.1	18	90	10	58	80	5	13	0	0.88
55555206--55555243	20	1.9	20	88	0	58	81	2	15	0	0.80
55556474--55556580	40	2.7	40	82	0	124	28	22	24	24	1.99
55556515--55556641	40	3.2	39	83	8	141	22	24	29	23	1.99
55569191--55569264	3	24.7	3	89	5	114	33	35	0	31	1.58
55571320--55571412	43	2.2	44	94	3	163	51	15	5	27	1.64
55571434--55571473	19	2.2	18	90	4	62	42	12	2	42	1.56
55576034--55576126	43	2.2	44	92	3	154	51	13	6	27	1.66
55576151--55576187	19	2.0	18	89	5	56	43	18	2	35	1.65
55580845--55580882	19	2.0	20	89	5	60	71	0	7	21	1.11
55581934--55582019	24	3.5	24	78	6	84	26	18	27	26	1.98
55581982--55582045	24	2.7	24	87	0	83	26	15	31	26	1.96
55587328--55587352	8	3.1	8	100	0	50	24	0	28	48	1.52
55588453--55588491	20	1.9	21	89	5	62	71	0	7	20	1.10
55589566--55589676	24	4.5	26	77	13	94	28	14	29	27	1.95
55589543--55589654	49	2.3	48	83	10	131	25	16	30	27	1.96
55589566--55589654	24	3.7	24	80	7	101	26	15	30	26	1.96
55592070--55592113	19	2.4	19	85	7	56	50	0	9	40	1.34
55593906--55593974	28	2.5	28	95	2	122	43	27	10	18	1.82
55601804--55601913	46	2.4	46	93	0	184	21	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55601804--55601929	46	2.7	46	87	2	182	20	19	29	30	1.97
55609168--55609201	15	2.3	15	90	5	52	26	0	17	55	1.42
55611251--55611296	20	2.2	21	84	7	58	73	0	10	15	1.08
55613510--55613613	52	2.0	52	98	0	199	20	19	20	40	1.92
55614204--55614389	76	2.5	75	76	4	194	29	18	24	26	1.98
55625158--55625209	21	2.6	19	74	14	50	42	19	3	34	1.69
55625777--55625907	48	2.7	49	82	10	162	24	28	18	29	1.98
55633178--55633319	40	3.5	40	83	1	124	27	23	26	22	1.99
55633217--55633345	40	3.2	39	84	6	152	24	22	27	25	2.00
55642714--55642943	49	4.7	49	95	1	381	27	9	33	29	1.88
55642714--55642943	99	2.3	97	93	1	379	27	9	33	29	1.88
55643038--55643158	37	3.3	37	96	1	217	25	19	33	21	1.97
55648967--55649313	49	7.1	49	92	0	550	32	9	29	28	1.89
55649145--55649493	178	2.0	178	92	0	590	30	10	31	27	1.90
55649243--55649398	80	2.0	80	100	0	312	30	10	32	26	1.90
55649323--55649572	49	5.1	49	94	0	392	29	9	32	28	1.89
55649194--55649447	129	2.0	129	96	0	463	30	10	31	27	1.90
55649107--55649542	227	1.9	227	92	0	737	30	9	30	28	1.89
55649621--55649707	37	2.3	36	94	5	147	20	19	33	26	1.97
55651570--55651869	40	7.6	40	82	5	270	23	21	28	26	1.99
55651687--55651869	79	2.3	79	91	1	296	24	22	28	25	1.99
55655710--55656056	49	7.1	49	92	0	550	32	9	29	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55655888--55656236	178	2.0	178	92	0	590	30	10	31	27	1.90
55655986--55656141	80	2.0	80	100	0	312	30	10	32	26	1.90
55656066--55656315	49	5.1	49	94	0	392	29	9	32	28	1.89
55655937--55656190	129	2.0	129	96	0	463	30	10	31	27	1.90
55655850--55656285	227	1.9	227	92	0	737	30	9	30	28	1.89
55656364--55656450	37	2.3	36	94	5	147	20	19	33	26	1.97
55660700--55660754	26	2.1	26	100	0	110	36	7	14	41	1.74
55665032--55665187	42	3.6	43	71	14	115	30	26	16	26	1.97
55676011--55676142	45	2.9	45	88	0	192	37	28	12	21	1.90
55691115--55691236	47	2.6	47	92	0	190	34	14	23	27	1.94
55691215--55691411	54	3.6	54	82	7	213	36	17	24	21	1.95
55695368--55695571	40	5.1	40	86	3	236	28	28	20	22	1.98
55695364--55695575	80	2.7	79	86	5	293	28	27	20	23	1.99
55703674--55703785	42	2.7	42	74	10	104	32	25	14	28	1.94
55705007--55705155	43	3.5	43	75	12	144	27	16	26	28	1.97
55705486--55705564	41	1.9	41	84	5	106	21	18	26	32	1.97
55708606--55708855	40	6.2	40	90	1	385	25	24	28	22	1.99
55716779--55717028	40	6.2	40	90	1	385	25	24	28	22	1.99
55719218--55719269	26	2.0	26	85	7	70	30	25	3	40	1.73
55720889--55721061	27	6.4	27	87	2	258	29	26	6	37	1.81
55720875--55721269	27	14.7	26	76	8	150	35	24	8	31	1.85
55721086--55721270	54	3.4	53	80	1	172	38	23	9	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55721254--55721871	27	23.2	27	86	3	788	33	19	21	25	1.97
55721115--55721269	81	1.9	81	84	2	204	40	23	9	27	1.84
55721508--55721547	19	2.1	19	95	0	71	27	17	25	30	1.97
55722301--55722362	22	2.9	21	80	7	70	20	22	22	33	1.97
55722520--55722621	27	3.8	27	85	5	116	19	23	20	36	1.95
55722520--55722621	54	1.9	53	83	2	132	19	23	20	36	1.95
55722753--55722831	31	2.5	31	91	0	122	21	17	12	48	1.80
55735910--55735962	26	2.0	26	96	0	97	26	20	20	32	1.98
55747247--55747332	43	2.0	43	88	0	127	20	17	30	31	1.96
55748644--55748672	12	2.3	13	94	5	51	31	10	24	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427