genome.fa.s11.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  150  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41151896--41151949	22	2.3	24	78	9	58	20	12	0	66	1.24
41162620--41162644	13	1.9	13	100	0	50	64	4	0	32	1.12
41163443--41163495	20	2.5	22	76	17	67	58	1	5	33	1.32
41168267--41168332	25	3.0	21	75	16	78	28	1	15	54	1.50
41169764--41169805	22	1.9	22	100	0	84	50	0	0	50	1.00
41169896--41169962	14	4.7	14	90	3	98	35	17	8	37	1.82
41169896--41169962	29	2.4	28	92	2	107	35	17	8	37	1.82
41175710--41176072	50	7.5	49	78	8	309	28	17	27	26	1.97
41175695--41176029	145	2.3	143	80	9	347	28	17	27	26	1.97
41178497--41178534	19	2.0	19	100	0	58	26	0	15	57	1.38
41179157--41179203	23	2.0	23	84	8	60	8	17	8	65	1.44
41179340--41179380	21	2.0	21	85	9	57	17	14	9	58	1.62
41181535--41181582	21	2.3	21	85	7	62	39	22	8	29	1.83
41184596--41184667	21	3.4	21	84	3	92	30	25	8	36	1.85
41194131--41194177	23	2.0	23	84	12	60	53	0	34	12	1.39
41195156--41195320	79	2.1	79	100	0	330	29	18	15	36	1.91
41211795--41211835	2	20.5	2	100	0	82	48	0	0	51	1.00
41216340--41216389	26	1.9	26	87	0	73	42	20	16	22	1.89
41220338--41220425	44	2.0	44	97	0	167	34	12	18	35	1.88
41221835--41221922	42	2.1	42	93	0	149	20	30	29	19	1.97
41223387--41223440	26	2.1	26	86	3	74	40	24	12	22	1.89
41231776--41232017	48	5.0	48	92	0	394	35	6	26	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41232158--41232260	37	2.8	37	93	0	179	23	19	32	25	1.98
41235418--41235459	22	1.9	22	90	0	66	42	11	26	19	1.85
41240218--41240341	38	3.2	38	86	4	160	21	20	25	32	1.98
41247439--41247699	47	5.6	47	94	0	423	31	12	28	26	1.93
41247408--41247719	94	3.3	94	89	0	464	31	11	29	28	1.91
41247456--41247529	23	3.2	23	62	24	55	28	10	29	31	1.91
41247621--41247696	22	3.3	22	65	28	59	31	13	30	25	1.93
41247408--41247699	47	6.2	47	92	0	404	31	11	29	27	1.92
41247713--41247803	46	2.0	46	82	4	112	34	6	32	26	1.82
41255341--41255484	39	3.7	40	87	0	193	23	30	22	22	1.99
41258343--41258513	85	2.0	85	97	2	326	32	12	8	45	1.73
41260403--41260540	40	3.5	40	94	3	226	23	28	23	23	1.99
41263082--41263111	2	15.0	2	100	0	60	50	0	0	50	1.00
41263108--41263167	27	2.3	26	85	2	75	21	21	20	36	1.95
41267186--41267390	40	5.1	40	90	1	313	26	27	22	22	1.99
41275870--41275899	14	2.1	14	93	0	51	20	46	0	33	1.51
41277453--41277503	24	2.2	24	85	3	68	19	5	1	72	1.15
41277453--41277517	24	2.7	23	81	11	67	21	6	1	70	1.17
41281646--41281768	49	2.5	49	95	0	219	26	10	33	29	1.90
41281871--41281948	37	2.1	37	100	0	156	28	19	32	20	1.97
41298135--41298180	23	2.0	24	83	12	60	2	43	0	54	1.12
41300223--41300657	24	18.1	24	98	0	780	36	25	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41306508--41306942	24	18.1	24	98	0	780	36	25	18	20	1.95
41316113--41316184	28	2.5	29	86	4	92	26	15	27	30	1.96
41323957--41324028	28	2.5	29	86	4	92	26	15	27	30	1.96
41330541--41330570	14	2.1	14	93	0	51	50	13	6	30	1.67
41337010--41337061	26	2.0	26	88	0	77	46	21	17	15	1.84
41337058--41337139	27	3.1	26	81	10	94	34	18	21	25	1.96
41342062--41342092	2	15.5	2	100	0	62	51	0	0	48	1.00
41348222--41348353	33	4.0	33	78	0	129	30	25	20	24	1.99
41348511--41348589	27	2.9	27	83	3	79	32	18	24	24	1.97
41352088--41352235	67	2.2	69	78	10	162	32	16	28	22	1.96
41357030--41357212	40	4.6	40	85	4	253	25	23	26	24	2.00
41357030--41357248	79	2.8	79	84	5	266	24	22	27	25	2.00
41365091--41365274	40	4.6	40	82	9	216	26	22	26	25	2.00
41370410--41370434	9	2.8	9	100	0	50	88	0	0	12	0.53
41371063--41371121	28	2.1	28	100	0	118	16	11	25	45	1.82
41371742--41371803	27	2.3	27	91	0	97	27	16	16	40	1.89
41371783--41371862	27	3.0	27	90	0	124	30	8	20	41	1.82
41371758--41371884	54	2.4	54	80	6	141	27	9	19	43	1.82
41371784--41371896	27	4.1	28	82	5	117	28	7	23	41	1.80
41371877--41372195	27	11.8	27	84	2	390	41	8	21	28	1.82
41371877--41372195	54	5.9	54	89	0	440	41	8	21	28	1.82
41372201--41372290	27	3.3	27	85	3	119	33	10	16	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41371877--41372249	81	4.6	81	84	0	298	40	8	21	29	1.83
41372184--41372290	54	2.0	54	81	7	128	31	10	19	38	1.85
41372201--41372305	27	3.9	27	79	9	99	35	9	16	39	1.81
41374482--41374538	24	2.5	24	85	5	73	40	22	5	31	1.76
41375441--41375571	42	3.1	42	84	4	176	29	25	16	29	1.96
41377919--41378020	29	3.6	29	85	4	127	27	29	16	26	1.97
41377910--41378018	58	1.9	57	86	1	155	27	29	15	27	1.96
41382219--41382327	58	1.9	58	86	1	157	26	29	15	28	1.96
41382228--41382329	29	3.6	29	83	1	125	27	29	15	27	1.96
41382556--41382594	16	2.4	16	95	0	69	5	20	25	48	1.70
41387048--41387184	46	3.0	46	85	0	184	26	32	8	33	1.85
41387155--41387587	47	9.1	47	91	2	641	26	29	11	32	1.91
41390797--41390881	41	2.1	41	93	0	143	37	21	18	22	1.94
41395044--41395191	40	3.7	40	91	1	217	23	22	29	25	1.99
41397004--41397032	6	4.8	6	100	0	58	17	13	0	68	1.20
41397001--41397044	18	2.5	17	85	10	61	15	9	2	72	1.19
41398285--41398362	38	2.1	38	95	0	138	19	28	10	42	1.83
41400003--41400027	13	1.9	13	100	0	50	44	0	8	48	1.32
41402413--41402461	24	2.0	24	100	0	98	34	8	28	28	1.86
41405007--41405033	2	13.5	2	100	0	54	51	0	0	48	1.00
41405585--41405704	46	2.6	47	89	4	190	34	28	15	22	1.94
41407983--41408176	55	3.6	53	76	3	154	37	19	23	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41410403--41410585	39	4.7	39	91	0	303	27	21	28	22	1.99
41410403--41410624	78	2.8	78	88	2	266	25	22	28	22	1.99
41410404--41410624	117	1.9	118	85	2	311	25	22	28	23	1.99
41420898--41421000	48	2.2	47	87	5	145	33	26	17	23	1.96
41421957--41422024	32	2.1	32	97	0	127	23	19	26	30	1.98
41423115--41423373	46	5.6	46	91	0	358	20	23	14	41	1.89
41430153--41430217	32	2.0	33	96	3	123	40	12	12	35	1.80
41433555--41433591	14	2.6	15	83	12	51	56	5	5	32	1.45
41433739--41433764	12	2.2	12	100	0	52	34	7	23	34	1.83
41435410--41435456	24	1.9	25	83	12	62	29	2	14	53	1.53
41437284--41437318	17	2.0	17	88	5	52	20	5	2	71	1.19
41438636--41438719	28	3.0	29	84	3	91	29	30	14	25	1.95
41438935--41438985	16	3.2	16	82	0	66	13	17	19	49	1.80
41443169--41443281	28	4.0	28	83	4	122	26	30	15	28	1.96
41443171--41443281	56	2.0	57	83	5	145	26	30	15	27	1.96
41443501--41443537	15	2.4	16	90	9	67	10	21	16	51	1.74
41445525--41445583	22	3.0	19	79	16	59	69	8	16	5	1.32
41446920--41446998	18	4.4	18	74	6	61	40	13	13	31	1.85
41448549--41448726	40	4.5	40	90	3	254	24	28	24	22	1.99
41452521--41452621	39	2.5	40	85	1	132	30	22	24	21	1.99
41452521--41452703	40	4.6	40	82	3	181	27	22	26	23	1.99
41460546--41460646	39	2.5	40	85	1	132	30	22	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41460546--41460728	40	4.6	40	82	3	181	27	22	26	23	1.99
41464602--41464710	48	2.3	48	80	0	128	28	21	23	26	1.99
41464630--41464833	90	2.3	90	83	1	239	28	20	23	27	1.99
41464683--41464839	42	3.6	41	69	13	107	28	20	24	26	1.99
41467633--41467665	2	16.5	2	100	0	66	51	0	0	48	1.00
41468214--41468264	10	5.1	10	79	9	59	41	0	0	58	0.98
41468324--41468370	19	2.6	18	83	6	60	27	4	0	68	1.08
41469496--41469601	40	2.7	38	81	7	122	47	2	0	50	1.16
41469528--41469608	41	2.0	40	85	9	110	46	2	0	50	1.14
41474979--41475025	24	2.0	24	83	8	60	36	19	2	42	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427