genome.fa.s11.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  166  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46246943--46247079	6	22.3	6	69	15	66	21	18	11	48	1.80
46246943--46247070	37	3.5	37	85	0	166	21	19	10	48	1.79
46248064--46248125	30	2.1	30	96	0	115	32	4	35	27	1.78
46249277--46249633	27	13.2	27	86	1	410	29	21	7	41	1.80
46249931--46249968	2	19.0	2	100	0	76	50	50	0	0	1.00
46249968--46249999	2	16.0	2	100	0	64	50	0	0	50	1.00
46250006--46250057	27	1.9	27	84	0	68	21	25	21	32	1.98
46250197--46250284	37	2.4	37	92	0	140	20	21	12	45	1.84
46250176--46250305	6	21.3	6	70	17	90	20	19	13	47	1.82
46250176--46250284	31	3.4	31	78	15	112	20	20	12	46	1.82
46250183--46250296	37	3.2	36	79	12	130	19	20	12	48	1.80
46288477--46288525	17	2.8	18	74	22	50	24	18	22	34	1.96
46289347--46289513	40	4.2	40	79	6	169	25	21	27	25	1.99
46294551--46294724	48	3.6	48	79	3	170	22	28	21	27	1.99
46296654--46296747	38	2.5	38	100	0	188	26	13	27	31	1.94
46297346--46297530	40	4.7	38	84	7	174	24	22	27	25	2.00
46297347--46297530	79	2.3	81	85	7	243	24	22	27	25	2.00
46297347--46297563	79	2.7	74	77	17	188	25	21	26	26	1.99
46300375--46300504	29	4.5	29	91	2	201	27	25	13	33	1.93
46300375--46300533	58	2.8	57	87	5	196	28	25	13	33	1.93
46306310--46306423	39	2.9	39	92	1	174	21	19	32	26	1.97
46306317--46306453	39	3.5	40	86	1	125	21	21	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46310801--46310921	64	1.9	64	89	3	190	39	14	10	35	1.80
46312666--46312780	43	2.7	43	89	2	169	23	17	25	33	1.96
46312666--46312814	43	3.5	43	84	1	147	25	16	25	32	1.96
46314264--46314307	18	2.4	19	80	3	54	40	2	18	38	1.63
46315783--46315946	42	3.7	42	82	10	195	28	26	14	29	1.95
46315866--46316035	47	3.6	47	82	9	186	29	27	15	28	1.96
46315827--46316035	91	2.3	94	82	9	236	29	26	15	28	1.96
46316066--46316175	31	3.5	31	92	3	177	24	28	18	29	1.98
46316151--46316327	50	3.5	50	94	2	284	26	24	15	33	1.95
46320967--46321136	39	4.3	40	88	5	215	24	20	28	25	1.99
46328192--46328262	33	2.1	34	84	2	90	26	28	21	23	1.99
46329702--46329783	27	3.0	27	82	7	103	31	23	25	19	1.98
46329889--46329953	28	2.3	28	92	5	105	29	7	29	33	1.85
46331022--46331054	12	2.6	13	85	9	50	45	0	45	9	1.35
46334075--46334189	55	2.1	56	82	8	137	34	22	24	18	1.96
46334100--46334189	27	3.2	27	81	7	101	32	24	24	18	1.97
46334295--46334355	28	2.2	28	91	5	97	29	8	29	32	1.86
46343028--46343235	40	5.2	39	84	1	218	25	25	22	25	2.00
46343028--46343233	80	2.6	81	84	3	247	25	26	22	25	2.00
46347762--46347804	16	2.7	16	85	0	59	53	20	18	6	1.67
46348017--46348106	29	3.1	28	81	7	110	28	13	27	30	1.94
46353667--46353692	12	2.2	12	100	0	52	23	7	15	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46355165--46355207	16	2.8	15	79	6	50	39	9	16	34	1.80
46356184--46356228	22	2.0	22	100	0	90	33	17	17	31	1.94
46362496--46362543	25	1.9	25	86	0	69	33	25	16	25	1.96
46362591--46362646	11	5.5	11	71	16	57	37	10	19	32	1.86
46362580--46362646	20	3.3	20	93	0	116	35	10	20	32	1.87
46362696--46362802	24	4.4	24	87	2	133	33	22	17	26	1.96
46371266--46371344	31	2.5	31	97	0	149	26	25	18	29	1.98
46371368--46371459	42	2.2	42	90	0	139	34	21	13	30	1.91
46371604--46371752	26	5.8	26	94	0	248	28	23	21	26	1.99
46372555--46372618	27	2.4	27	81	5	76	21	25	17	35	1.95
46372657--46372954	27	11.0	27	76	6	163	30	9	19	40	1.83
46372677--46372823	56	2.7	54	76	2	141	31	8	19	40	1.80
46372762--46372954	54	3.6	54	78	4	210	29	8	21	40	1.82
46372734--46373021	27	10.7	27	79	4	163	30	8	21	38	1.84
46378877--46378953	38	2.0	38	94	0	136	37	10	20	31	1.87
46380786--46380820	18	1.9	18	88	0	52	28	17	11	42	1.83
46386130--46386283	42	3.6	42	85	3	211	31	17	24	27	1.97
46388021--46388086	28	2.4	26	73	16	71	40	22	19	16	1.91
46399075--46399103	13	2.2	13	100	0	58	31	34	20	13	1.92
46403084--46403140	17	3.4	17	72	18	64	49	5	15	29	1.67
46403080--46403147	34	2.0	34	100	0	136	47	5	14	32	1.69
46403434--46403494	29	2.0	31	87	6	90	45	8	4	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46403448--46403513	30	2.2	29	81	7	71	46	9	9	34	1.67
46404207--46404271	9	7.7	9	75	13	66	18	7	13	60	1.57
46404205--46404271	17	4.0	17	79	11	84	19	7	13	59	1.57
46404208--46404271	24	2.5	26	82	5	78	18	7	14	59	1.58
46404548--46404623	37	2.1	37	100	0	152	44	18	10	26	1.82
46404962--46404991	12	2.5	12	94	0	51	6	30	40	23	1.80
46405603--46405642	17	2.4	17	91	8	64	27	27	20	25	1.99
46407454--46407793	27	12.6	27	83	6	368	29	22	7	40	1.82
46407583--46407837	81	3.2	80	81	5	192	29	22	7	39	1.82
46409117--46409173	9	5.9	9	73	15	51	35	8	21	35	1.84
46409115--46409177	20	3.2	20	95	0	117	36	12	19	31	1.89
46409232--46409374	24	6.0	24	92	3	218	29	23	21	25	1.99
46409566--46409629	31	2.1	31	90	0	101	35	15	23	25	1.94
46411855--46411970	44	2.7	43	77	9	119	23	21	26	28	1.99
46411856--46411970	43	2.6	44	75	14	112	23	21	26	28	1.99
46418902--46418937	15	2.4	15	100	0	72	50	0	8	41	1.33
46422943--46422992	25	2.0	25	100	0	100	32	12	24	32	1.91
46427581--46427610	2	15.0	2	100	0	60	50	0	0	50	1.00
46428066--46428164	28	3.5	29	94	5	168	28	12	27	32	1.92
46433075--46433123	20	2.5	20	86	0	71	22	24	2	51	1.59
46438261--46438333	35	2.1	35	97	0	137	34	2	27	35	1.71
46438296--46438664	48	7.6	48	96	1	657	36	5	26	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46438224--46438381	83	1.9	83	94	0	280	37	5	25	32	1.78
46438635--46438691	27	2.1	27	100	0	114	36	3	26	33	1.74
46438587--46438730	75	1.9	75	97	0	270	35	6	26	31	1.81
46445314--46445469	65	2.4	65	89	0	231	28	15	27	28	1.96
46448332--46448471	40	3.5	40	90	2	203	27	26	22	22	1.99
46448448--46448493	22	2.1	22	100	0	92	23	26	26	23	2.00
46448408--46448533	62	2.0	62	93	0	216	27	25	23	23	2.00
46448470--46448559	40	2.2	40	98	0	171	28	25	22	23	1.99
46448368--46448558	102	1.9	102	92	2	321	28	26	22	22	1.99
46456239--46456268	15	2.0	15	100	0	60	40	26	0	33	1.57
46456444--46456608	40	4.2	40	93	2	246	27	27	22	23	1.99
46460501--46460543	19	2.3	18	85	14	61	83	2	9	4	0.87
46464513--46464604	40	2.3	41	83	12	111	28	27	16	28	1.97
46464549--46464624	40	1.9	40	83	5	100	32	22	17	27	1.96
46465035--46465100	29	2.3	29	81	5	71	30	25	1	42	1.64
46467954--46468129	33	5.3	33	93	0	298	27	28	21	22	1.99
46467954--46468129	66	2.7	66	97	0	334	27	28	21	22	1.99
46472979--46473027	17	2.8	18	74	22	50	24	18	22	34	1.96
46473850--46474016	40	4.2	40	79	6	169	25	21	27	25	1.99
46480482--46480544	31	2.1	31	90	3	101	36	15	23	23	1.94
46483327--46483416	27	3.3	27	85	3	119	40	17	10	32	1.83
46483327--46483433	54	2.0	54	81	7	128	38	20	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46483422--46483631	27	7.8	26	89	3	253	28	23	8	39	1.84
46483529--46483779	27	9.2	27	78	10	118	36	20	8	34	1.83
46483368--46483642	81	3.4	81	75	7	218	30	23	8	37	1.85
46483583--46483781	27	7.3	27	75	9	136	38	20	8	33	1.83
46483826--46483903	27	2.9	26	77	11	86	37	23	19	20	1.95
46485143--46485185	20	2.2	20	100	0	86	37	11	18	32	1.87
46485150--46485193	20	2.2	20	91	0	70	34	11	22	31	1.90
46485239--46485427	24	8.0	24	89	4	269	29	22	21	26	1.99
46485238--46485427	71	2.7	71	87	6	269	29	22	21	26	1.99
46485619--46485682	31	2.1	31	87	0	92	37	15	21	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427