Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  360  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104603574--104603611
19
2.0
20
84
5
51
44
5
0
50
1.24
104605799--104605834
18
2.0
18
88
0
54
27
16
22
33
1.95
104606112--104606159
9
5.3
9
76
0
51
29
8
18
43
1.79
104606290--104606418
67
1.9
67
96
0
240
31
8
27
32
1.87
104609579--104609615
18
2.2
18
85
9
51
59
0
8
32
1.27
104609583--104609615
12
2.8
12
95
0
57
57
0
9
33
1.30
104617034--104617080
24
2.0
24
100
0
94
55
12
10
21
1.67
104624813--104624900
30
2.9
31
75
10
90
37
14
0
47
1.45
104625049--104625107
15
3.8
16
79
4
68
59
3
11
25
1.48
104626458--104626500
14
3.1
13
86
10
50
2
13
0
83
0.74
104626483--104626537
25
2.2
26
83
3
67
12
9
10
67
1.43
104626483--104626543
26
2.3
26
80
5
70
13
9
9
67
1.43
104628867--104628970
47
2.2
47
81
5
122
34
21
14
29
1.93
104628926--104629077
52
2.9
52
78
10
157
30
25
15
28
1.95
104628943--104629077
52
2.6
52
84
5
182
31
25
14
28
1.95
104631827--104631908
35
2.4
34
80
13
98
19
15
7
57
1.62
104632260--104632388
15
8.9
14
73
17
70
25
6
1
65
1.26
104632260--104632367
29
3.8
28
69
18
78
25
7
1
64
1.30
104632519--104632580
25
2.5
24
75
14
72
33
8
0
58
1.28
104640742--104640802
31
2.0
31
83
6
79
44
8
8
39
1.64
104641292--104641350
29
2.0
29
100
0
118
33
3
16
45
1.64
104641671--104641716
19
2.4
20
82
7
51
52
0
2
45
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104641666--104641703
20
2.0
18
90
10
58
44
0
5
50
1.24
104642156--104642196
11
3.7
11
93
0
64
26
24
0
48
1.51
104642149--104642198
22
2.3
23
75
10
59
26
28
0
46
1.53
104643770--104644135
46
8.0
46
92
0
525
21
24
15
38
1.92
104646290--104646326
20
1.9
20
88
5
58
51
8
0
40
1.32
104648139--104648305
46
3.7
46
87
0
219
19
22
16
41
1.89
104648283--104648321
16
2.4
16
95
0
69
25
23
15
35
1.94
104648237--104648367
62
2.1
62
85
0
172
22
23
15
38
1.92
104648299--104648478
46
3.9
46
97
0
333
24
25
15
35
1.94
104648191--104648413
108
2.1
108
86
0
311
21
24
15
38
1.92
104650636--104650672
20
1.9
20
88
5
58
51
8
0
40
1.32
104652467--104652510
24
1.9
22
86
9
61
45
2
22
29
1.65
104652776--104652800
11
2.3
11
100
0
50
28
0
0
72
0.86
104655071--104655139
30
2.3
30
82
0
93
27
42
21
8
1.82
104662822--104663263
126
3.5
126
90
0
690
28
17
16
36
1.92
104663261--104663573
166
1.9
166
89
2
486
44
18
1
35
1.58
104663501--104663544
22
2.0
22
90
4
70
43
25
0
31
1.55
104669464--104669507
17
2.7
15
83
13
52
25
4
15
54
1.60
104673675--104673772
46
2.1
47
86
1
135
23
14
14
47
1.80
104674191--104674235
14
2.9
16
75
18
51
20
26
24
28
1.99
104674193--104674252
16
3.9
15
77
16
52
25
26
23
25
2.00
104674245--104674296
27
1.9
27
88
0
77
23
17
32
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104674386--104674433
15
3.3
15
82
2
53
22
25
29
22
1.99
104688371--104688415
21
2.1
22
84
8
58
31
4
4
60
1.37
104688402--104688442
23
1.9
21
85
14
57
36
7
0
56
1.27
104692510--104692560
19
2.6
19
81
3
57
11
9
1
76
1.10
104692525--104692567
19
2.3
19
84
8
52
16
11
2
69
1.28
104692607--104692703
23
4.3
23
73
13
78
47
0
0
52
1.00
104692617--104692656
12
3.3
13
76
20
50
47
0
0
52
1.00
104692614--104692731
21
5.6
21
76
16
93
46
0
0
52
1.06
104692646--104692731
19
4.2
21
81
14
99
44
1
0
54
1.07
104692608--104692713
24
4.7
22
74
15
74
48
0
0
51
1.00
104692868--104692909
19
2.2
20
87
12
61
57
0
0
42
0.99
104692870--104692916
22
2.3
21
85
10
62
53
0
0
46
1.00
104692907--104692970
23
2.8
23
83
9
87
53
3
1
42
1.26
104693067--104693093
14
1.9
14
100
0
54
85
0
7
7
0.75
104694664--104694701
18
2.1
18
95
0
67
50
2
5
42
1.39
104701336--104701382
21
2.2
21
92
7
78
17
23
0
59
1.37
104701533--104701568
17
2.1
17
100
0
72
16
11
11
61
1.57
104701952--104701986
14
2.5
14
95
0
61
17
11
5
65
1.43
104703986--104704029
19
2.4
18
88
7
70
47
11
2
38
1.52
104707754--104707793
19
2.2
18
95
4
71
42
15
2
40
1.60
104708542--104708580
11
3.6
11
82
6
53
20
43
5
30
1.73
104713195--104713237
11
4.0
11
84
6
61
20
46
4
27
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104713194--104713236
21
2.0
21
90
4
68
20
46
2
30
1.63
104723506--104723545
21
2.0
20
85
5
53
67
2
0
30
1.04
104724168--104724210
22
2.0
22
81
9
52
46
4
16
32
1.67
104726290--104726322
17
2.0
17
94
5
59
36
15
0
48
1.45
104726603--104726926
137
2.4
138
84
0
407
21
23
14
40
1.90
104726608--104726926
46
7.0
46
87
1
390
21
23
14
40
1.90
104729490--104729550
2
30.5
2
100
0
122
50
0
49
0
1.00
104735119--104735193
40
1.9
40
88
2
116
62
5
8
24
1.43
104735834--104735905
34
2.2
33
85
7
92
25
26
20
27
1.99
104738497--104738555
10
5.9
10
74
7
57
66
1
8
23
1.29
104739186--104739231
23
2.0
22
88
12
67
15
8
0
76
1.02
104739186--104739228
20
2.0
22
86
8
63
13
9
0
76
1.01
104740457--104740600
42
3.4
42
78
6
121
31
15
23
29
1.96
104745206--104745244
14
2.9
14
82
17
55
76
0
0
23
0.78
104745195--104745245
10
4.9
10
80
20
52
76
0
1
21
0.88
104751561--104751619
10
5.9
10
76
7
57
67
1
6
23
1.24
104756139--104756214
37
2.1
37
100
0
152
55
7
2
34
1.43
104762065--104762113
21
2.4
21
93
3
82
40
8
30
20
1.81
104764668--104764701
2
17.0
2
100
0
68
50
0
0
50
1.00
104764863--104764907
14
3.1
15
79
20
60
35
0
0
64
0.94
104774758--104774823
31
2.1
31
91
0
105
28
25
19
25
1.99
104774782--104774869
46
1.9
46
86
4
124
28
22
22
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104774866--104775042
50
3.5
50
92
0
282
27
22
14
35
1.93
104777721--104777766
25
1.9
24
91
8
76
34
2
0
63
1.07
104777786--104777856
25
2.8
26
80
6
92
36
7
2
53
1.43
104777845--104777937
25
3.9
23
75
14
73
31
6
5
56
1.47
104778002--104778058
25
2.4
24
80
14
64
36
15
3
43
1.64
104797636--104797683
18
2.6
19
80
12
55
66
6
2
25
1.26
104797846--104797883
20
1.9
20
84
10
51
63
2
2
31
1.22
104803738--104803795
3
19.3
3
100
0
116
34
0
0
65
0.93
104804931--104805047
40
2.9
41
89
3
166
38
8
15
37
1.78
104807588--104807727
57
2.4
58
79
9
135
30
22
18
28
1.97
104810725--104811832
561
2.0
561
91
1
1785
32
12
19
34
1.90
104812557--104812732
46
3.8
45
81
10
212
21
21
29
28
1.98
104812553--104812724
93
1.8
93
94
0
308
20
21
30
27
1.98
104815667--104815735
15
4.8
14
82
8
77
11
13
15
59
1.61
104818112--104818287
46
3.8
45
81
10
212
21
21
29
28
1.98
104818109--104818279
93
1.8
93
94
0
306
21
21
29
27
1.98
104820614--104820763
67
2.2
67
81
8
171
32
17
28
21
1.96
104820638--104820821
67
2.8
64
77
8
194
29
17
29
22
1.97
104823653--104823681
14
2.0
15
93
6
51
75
13
3
6
1.13
104833524--104833548
12
2.1
12
100
0
50
80
0
20
0
0.72
104834843--104834993
40
3.8
40
77
13
134
27
23
26
22
2.00
104834879--104835009
40
3.3
40
79
2
156
25
23
27
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104838492--104838622
47
2.8
47
84
3
165
33
29
16
20
1.95
104840012--104840080
4
17.2
4
100
0
138
24
0
0
75
0.81
104847694--104847892
99
2.0
99
100
0
398
37
26
17
19
1.93
104850107--104850157
26
2.0
27
84
7
70
23
15
23
37
1.93
104851645--104851709
32
2.0
32
100
0
130
38
24
6
30
1.80
104855424--104855552
40
3.2
40
81
4
163
24
29
24
22
1.99
104855440--104855549
39
2.8
40
83
12
138
21
29
25
23
1.99
104864263--104864377
44
2.6
45
84
5
144
35
13
22
28
1.92
104866167--104866296
40
3.2
40
81
2
163
24
29
23
22
1.99
104866167--104866330
40
4.1
40
78
4
147
22
28
24
24
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427