genome.fa.s11.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  174  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48495053--48495223	93	1.8	93	93	2	299	28	28	21	22	1.99
48495045--48495216	46	3.7	46	76	14	183	29	27	19	22	1.98
48498312--48498394	27	3.3	27	60	16	68	36	7	25	31	1.83
48498133--48498526	49	8.0	49	97	0	689	33	9	27	30	1.88
48498609--48498695	37	2.3	36	94	5	147	20	19	33	26	1.97
48504011--48504277	24	11.1	24	97	0	471	20	17	25	36	1.95
48505777--48505879	37	2.8	37	95	0	179	25	32	19	23	1.98
48506020--48506549	48	11.0	48	95	0	916	31	26	6	35	1.81
48515317--48515477	43	3.7	43	78	6	173	32	24	15	27	1.95
48516247--48516343	30	3.2	30	76	2	106	27	27	16	27	1.97
48518282--48518341	17	3.6	16	74	17	50	26	28	10	35	1.89
48518738--48518834	30	3.2	30	75	2	97	27	15	27	28	1.96
48519230--48519256	8	3.4	8	100	0	54	51	0	11	37	1.37
48522374--48522400	9	3.0	9	100	0	54	44	11	0	44	1.39
48527704--48527827	17	7.0	17	73	17	92	11	20	1	66	1.32
48527704--48527775	36	2.0	35	86	2	99	12	19	1	66	1.31
48527781--48527816	15	2.3	16	90	4	56	5	25	0	69	1.10
48528172--48528303	63	2.1	64	91	2	221	15	21	21	41	1.90
48531134--48531236	27	3.8	27	80	5	118	36	19	22	21	1.95
48531346--48531480	27	4.9	27	78	10	96	27	20	17	34	1.95
48531363--48531480	27	4.3	27	80	8	114	26	20	16	36	1.94
48533460--48533519	29	2.1	29	93	0	102	33	20	10	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48534623--48534676	27	2.0	27	85	0	72	51	14	7	25	1.68
48534629--48534690	27	2.3	27	83	5	72	54	14	8	22	1.66
48535562--48535625	27	2.4	27	76	10	76	39	20	20	20	1.93
48535788--48535958	27	6.3	27	90	0	252	25	23	19	30	1.98
48541179--48541226	25	1.9	25	86	0	69	33	25	16	25	1.96
48541270--48541328	20	3.0	20	92	0	100	37	11	20	30	1.89
48541379--48541473	24	4.0	24	85	10	124	28	21	24	26	1.99
48541380--48541473	47	2.0	49	85	12	133	27	21	24	26	1.99
48541664--48541826	38	4.4	38	84	11	232	38	17	22	22	1.93
48541688--48541803	31	3.5	31	80	15	142	41	14	20	23	1.89
48541664--48541803	69	2.0	69	98	0	271	39	15	21	23	1.92
48548224--48548254	4	7.8	4	100	0	62	0	22	25	51	1.48
48550041--48550095	23	2.3	24	75	9	60	56	3	1	38	1.28
48550110--48550148	19	1.9	19	85	10	51	48	7	5	38	1.54
48555444--48555486	17	2.5	17	100	0	86	30	4	23	41	1.74
48556159--48556226	22	3.3	22	69	23	74	54	8	4	32	1.51
48556160--48556225	21	3.2	21	67	16	66	53	9	4	33	1.53
48556155--48556235	40	2.0	40	97	2	155	50	7	4	37	1.52
48556206--48556628	138	3.1	137	92	2	681	39	7	6	45	1.59
48558529--48558629	30	3.4	30	72	4	96	27	26	13	31	1.94
48561253--48561438	40	4.7	40	88	5	236	25	22	26	25	2.00
48561253--48561471	80	2.8	80	80	11	245	26	21	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48563836--48564011	46	3.8	45	80	12	214	20	21	29	28	1.98
48563832--48564003	93	1.8	93	94	0	308	20	21	30	27	1.98
48566962--48567030	15	4.6	15	83	0	84	11	17	13	57	1.64
48566953--48567040	30	3.0	30	81	8	99	10	17	15	56	1.66
48569420--48569595	46	3.8	46	81	10	232	20	21	29	28	1.98
48569416--48569587	93	1.8	93	96	0	317	20	22	30	27	1.98
48573391--48573470	33	2.4	35	79	8	94	28	23	18	28	1.98
48575940--48576007	21	3.2	20	80	12	66	76	4	17	1	1.03
48575951--48576007	5	11.0	5	77	17	55	77	3	17	1	1.00
48575951--48576007	16	3.7	14	80	17	60	77	3	17	1	1.00
48576088--48576168	30	2.7	29	79	7	90	61	0	25	12	1.31
48578776--48578800	13	1.9	13	100	0	50	16	32	16	36	1.90
48581267--48581346	33	2.4	35	79	8	94	28	23	18	28	1.98
48583196--48583344	80	1.9	80	81	2	183	22	30	24	22	1.99
48583237--48583344	40	2.7	38	85	8	128	21	29	25	23	1.99
48592464--48592543	33	2.4	34	77	12	85	30	23	17	28	1.97
48599696--48599911	46	4.6	46	81	10	233	29	19	29	21	1.98
48599693--48599911	93	2.3	94	84	10	272	29	20	29	21	1.98
48599693--48599957	93	2.8	92	80	10	238	29	19	29	22	1.98
48599693--48599937	47	5.3	45	71	18	182	29	19	28	22	1.98
48606986--48607158	46	3.7	46	76	17	187	21	20	27	30	1.98
48612753--48612798	19	2.3	20	85	14	69	21	10	17	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48618427--48618468	21	1.9	22	85	9	59	47	19	4	28	1.69
48619244--48619329	42	2.0	42	84	8	111	32	26	16	24	1.96
48621163--48621191	7	4.1	7	100	0	58	13	0	0	86	0.58
48621817--48622133	127	2.5	127	89	2	467	26	16	20	36	1.93
48635312--48635368	26	2.2	26	96	0	105	26	28	15	29	1.96
48637483--48637690	40	5.2	40	83	0	209	25	23	25	25	2.00
48637484--48637690	80	2.6	80	83	4	247	25	23	26	25	2.00
48641994--48642018	13	1.9	13	100	0	50	40	24	4	32	1.73
48644756--48644791	12	2.8	14	84	16	51	72	5	8	13	1.27
48658156--48658250	25	3.8	25	94	0	163	25	23	25	26	2.00
48658143--48658250	50	2.2	50	85	5	148	25	23	23	28	1.99
48658456--48658515	27	2.2	27	81	0	66	26	20	18	35	1.95
48658500--48658712	27	7.9	26	78	7	167	32	7	20	39	1.81
48658554--48658729	27	6.5	27	84	2	219	31	9	21	38	1.84
48661595--48661626	2	16.0	2	100	0	64	50	0	0	50	1.00
48665024--48665061	20	1.9	20	88	0	58	34	2	10	52	1.50
48673908--48673978	20	3.5	20	86	3	99	46	22	16	14	1.83
48675477--48675516	19	2.1	19	90	0	62	27	35	15	22	1.94
48683234--48683273	19	2.1	19	85	0	53	27	32	15	25	1.95
48683751--48683795	14	3.3	14	78	6	56	35	0	15	48	1.45
48684775--48684834	29	2.1	29	93	0	102	41	30	0	28	1.56
48684781--48684828	15	3.3	15	73	5	53	43	27	0	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48686086--48686125	14	2.9	13	88	7	53	10	35	7	47	1.65
48686714--48686788	6	12.3	6	73	18	66	18	17	14	49	1.80
48695523--48695585	27	2.4	26	76	10	65	25	7	14	52	1.68
48695634--48695675	20	2.2	20	87	8	61	21	7	14	57	1.61
48700207--48700278	24	3.0	24	89	0	117	36	31	9	22	1.87
48703812--48703986	46	3.8	46	76	7	192	29	26	20	23	1.99
48703817--48703987	93	1.8	93	91	0	279	29	27	20	22	1.99
48704405--48704463	29	2.0	29	86	3	82	32	23	8	35	1.85
48709469--48709516	18	2.6	18	75	15	53	58	6	0	35	1.23
48709730--48709764	10	3.5	10	88	0	52	37	22	25	14	1.92
48709727--48709774	20	2.4	20	75	0	60	31	18	29	20	1.97
48716234--48716260	10	2.7	10	100	0	54	18	11	29	40	1.85
48716602--48716626	13	1.9	13	100	0	50	36	16	32	16	1.90
48717110--48717206	30	3.2	30	76	2	88	29	14	25	29	1.95
48721052--48721099	21	2.3	20	89	3	69	14	16	22	45	1.84
48721325--48721349	13	1.9	13	100	0	50	28	0	8	64	1.22
48723523--48723560	19	2.0	19	90	10	60	73	5	21	0	1.02
48725764--48725809	10	4.5	10	81	5	56	15	23	21	39	1.92
48725761--48725809	21	2.4	20	89	3	71	14	22	22	40	1.90
48728377--48728407	12	2.6	12	100	0	62	45	12	16	25	1.83
48728410--48728434	12	2.1	12	100	0	50	76	0	16	8	1.02
48728404--48728459	18	3.1	18	79	5	60	69	1	19	8	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48728410--48728491	30	2.7	31	83	5	105	63	0	23	13	1.29
48734111--48734135	13	1.9	13	100	0	50	64	8	0	28	1.22
48734360--48734408	10	4.8	10	80	14	55	40	22	22	14	1.90
48734360--48734408	21	2.4	21	89	3	73	40	22	22	14	1.90
48736479--48736542	30	2.2	29	83	8	76	14	25	1	59	1.44
48736535--48736571	18	2.0	19	94	5	67	0	18	5	75	0.99
48738732--48738756	13	1.9	13	100	0	50	64	8	0	28	1.22
48738981--48739029	10	4.8	10	80	14	55	40	22	22	14	1.90
48738981--48739029	21	2.4	21	89	3	73	40	22	22	14	1.90
48739442--48739479	17	2.2	17	86	9	51	5	15	0	78	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427