genome.fa.s11.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  168  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46769009--46769176	80	2.1	81	83	7	209	42	19	8	29	1.81
46769063--46769215	81	1.9	80	81	9	186	39	19	10	30	1.85
46769204--46769393	27	7.0	27	86	0	245	35	19	21	24	1.96
46769595--46769689	25	3.8	25	91	0	145	27	24	23	25	2.00
46769595--46769702	25	4.4	25	89	1	137	30	22	22	25	1.99
46772955--46773341	27	14.4	27	79	6	293	41	21	7	29	1.81
46773579--46773699	41	3.0	41	83	0	161	25	20	24	28	1.99
46773840--46773904	22	3.0	22	80	8	78	20	23	23	33	1.97
46779126--46779310	27	6.8	26	75	13	90	40	18	9	31	1.82
46779151--46779292	54	2.6	53	77	8	135	44	17	8	29	1.78
46779570--46779692	41	3.0	41	83	7	169	20	20	30	29	1.97
46779833--46779891	22	2.7	23	84	7	77	22	23	18	35	1.96
46780291--46780354	32	2.0	32	90	0	101	26	17	25	31	1.97
46791566--46792182	336	1.8	337	82	4	805	27	23	17	31	1.97
46793384--46793532	40	3.8	40	78	11	164	24	27	23	24	2.00
46793396--46793572	78	2.2	80	80	9	202	24	26	22	25	2.00
46807025--46807191	40	4.2	41	83	5	182	25	26	21	26	2.00
46810905--46810988	43	2.0	43	83	4	107	28	27	15	28	1.96
46820271--46820331	11	5.7	11	84	7	90	60	0	0	39	0.97
46820272--46820335	21	3.0	21	100	0	128	57	0	0	42	0.98
46824756--46824801	20	2.3	20	81	7	58	23	4	21	50	1.67
46826105--46826226	43	2.8	43	89	0	181	27	12	25	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46828756--46828808	28	1.9	27	88	3	79	24	26	20	28	1.99
46828898--46828943	20	2.3	20	85	3	67	28	26	17	28	1.98
46834395--46834508	28	3.9	27	72	19	79	25	27	21	26	1.99
46834372--46834516	61	2.3	60	85	8	177	26	26	20	26	1.99
46834537--46834582	20	2.3	20	81	3	58	30	26	15	28	1.96
46837668--46837721	27	2.0	27	85	0	72	38	14	7	38	1.75
46840265--46840442	27	6.6	27	88	0	230	28	20	8	42	1.81
46840264--46840442	81	2.2	81	87	0	259	29	20	8	42	1.81
46840264--46840470	81	2.5	79	80	7	200	27	19	10	42	1.83
46840959--46841022	25	2.6	25	92	0	101	17	20	15	46	1.83
46840956--46841043	6	14.3	6	71	17	65	18	18	14	48	1.81
46842054--46842114	30	2.0	30	100	0	122	47	19	6	26	1.74
46845176--46845204	8	3.6	8	100	0	58	48	13	0	37	1.43
46847224--46847343	46	2.6	46	87	11	158	30	19	28	22	1.98
46848479--46848543	30	2.2	29	91	2	103	24	18	23	33	1.96
46849067--46849092	2	13.0	2	100	0	52	50	0	0	50	1.00
46849898--46850025	49	2.6	51	80	8	149	25	20	30	24	1.98
46852600--46852749	40	3.8	40	76	13	132	26	24	27	21	1.99
46852637--46852765	40	3.3	39	75	12	129	24	24	27	23	2.00
46852599--46852765	80	2.1	79	79	9	180	26	24	26	22	2.00
46860453--46860620	40	4.2	40	82	1	185	24	26	22	26	2.00
46867653--46867820	40	4.2	40	82	1	185	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46870198--46870346	39	3.8	40	75	14	123	26	24	26	21	1.99
46870246--46870362	39	3.0	38	75	13	112	25	25	26	22	2.00
46874387--46874428	2	21.0	2	85	0	57	50	4	2	42	1.36
46875068--46875141	29	2.6	29	89	4	105	25	16	32	25	1.96
46880552--46880694	24	6.0	24	88	4	191	29	21	21	27	1.99
46880552--46880680	47	2.7	47	90	3	186	30	20	21	27	1.98
46880552--46880695	71	2.0	72	86	4	202	29	21	21	27	1.99
46880886--46880949	31	2.1	31	90	0	101	35	15	23	25	1.94
46881895--46881968	29	2.6	29	89	4	105	25	16	32	25	1.96
46893930--46893994	28	2.3	28	94	0	112	33	27	7	30	1.85
46894100--46894187	28	3.1	27	82	8	106	21	23	22	31	1.98
46894108--46894179	27	2.6	27	86	4	99	23	26	18	31	1.97
46895281--46895314	10	3.3	10	84	8	50	29	8	8	52	1.62
46899149--46899408	49	5.1	49	80	14	301	33	8	27	30	1.87
46899149--46899408	102	2.6	96	81	13	306	33	8	27	30	1.87
46899144--46899408	59	5.1	52	79	13	312	33	9	26	30	1.87
46899306--46899426	49	2.6	45	81	10	136	31	10	28	28	1.91
46899475--46899561	37	2.3	36	92	5	138	20	18	33	27	1.96
46905976--46906040	28	2.3	28	94	0	112	33	27	7	30	1.85
46906147--46906235	28	3.2	27	85	7	117	20	23	23	32	1.98
46906158--46906246	27	3.2	28	82	4	81	23	26	17	31	1.97
46906147--46906260	55	2.1	55	80	8	124	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46908215--46908346	29	4.5	29	95	1	228	24	22	14	38	1.91
46908215--46908346	59	2.3	59	94	1	230	24	22	14	38	1.91
46911196--46911253	21	2.8	21	86	5	73	1	51	17	29	1.55
46911651--46911679	14	2.1	14	93	6	51	58	6	0	34	1.25
46914975--46915000	12	2.2	12	100	0	52	30	26	7	34	1.85
46916695--46917033	9	37.4	9	66	17	125	37	1	13	47	1.54
46916703--46916799	29	3.5	29	69	18	98	36	0	15	48	1.45
46916732--46916986	18	14.0	18	69	14	148	37	2	13	46	1.56
46916713--46916820	53	2.0	53	96	3	200	37	0	13	49	1.43
46916766--46917038	74	3.6	74	89	4	424	38	2	13	46	1.55
46919221--46919257	2	18.5	2	100	0	74	51	0	0	48	1.00
46920158--46920192	17	2.0	18	88	5	54	65	0	0	34	0.93
46920304--46920356	26	2.1	26	92	3	90	50	3	5	39	1.44
46920307--46920364	16	3.4	17	76	9	55	46	3	5	44	1.42
46920590--46920635	15	3.1	15	83	0	65	26	45	6	21	1.76
46920746--46920873	14	8.7	14	68	12	60	46	28	0	25	1.53
46920707--46920795	37	2.4	37	83	3	99	43	31	2	22	1.65
46920743--46920800	22	2.6	22	77	0	62	46	31	0	22	1.52
46921153--46921317	41	4.0	41	84	1	197	29	17	24	29	1.97
46921160--46921338	41	4.4	41	83	3	184	31	18	21	29	1.97
46923120--46923214	50	1.9	50	86	4	138	24	26	18	30	1.98
46934747--46934847	39	2.5	40	85	1	132	30	22	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46934747--46934929	40	4.6	40	82	3	181	27	22	26	23	1.99
46942850--46942950	39	2.5	40	85	1	132	30	22	24	21	1.99
46942850--46943032	40	4.6	40	82	3	181	27	22	26	23	1.99
46945161--46945269	45	2.4	45	90	0	164	23	19	28	28	1.98
46945251--46945329	41	1.9	42	82	7	99	29	18	26	25	1.98
46946261--46946291	2	15.5	2	100	0	62	48	0	0	51	1.00
46963116--46963263	39	3.8	38	78	10	131	22	27	24	26	2.00
46971139--46971287	80	1.9	80	81	2	183	22	30	24	22	1.99
46971180--46971287	40	2.7	38	85	8	128	21	29	25	23	1.99
46980967--46981411	50	8.9	50	79	5	407	26	19	24	30	1.98
46980967--46981411	202	2.2	200	89	2	694	26	19	24	30	1.98
46987791--46987942	40	3.8	39	79	5	144	27	23	26	22	1.99
46987829--46987958	40	3.3	39	80	4	161	24	23	27	24	2.00
46992999--46993048	24	2.1	24	92	3	84	32	20	8	40	1.81
46998713--46998920	40	5.2	40	84	0	218	25	22	25	25	2.00
46998714--46998920	80	2.6	80	83	4	247	25	22	26	25	2.00
47006850--47007055	40	5.2	40	80	5	188	26	21	26	25	2.00
47015821--47015975	43	3.6	43	74	8	127	31	25	15	27	1.96
47020242--47020301	27	2.3	27	94	2	104	31	6	18	43	1.76
47022132--47022261	40	3.2	40	83	4	165	22	23	29	24	1.99
47024696--47024741	21	2.2	21	88	3	67	69	2	8	19	1.25
47026401--47026576	49	3.6	47	75	11	140	24	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47026401--47026576	99	1.8	96	85	6	246	24	28	19	27	1.98
47032896--47032982	27	3.3	27	95	1	149	32	6	17	43	1.75
47036100--47036161	27	2.3	27	80	0	70	27	27	9	35	1.88
47045531--47045569	2	19.5	2	89	0	60	46	0	5	48	1.24
47060071--47060128	6	9.8	6	76	9	57	1	18	3	75	1.03
47060070--47060128	24	2.4	23	83	13	66	1	20	3	74	1.05
47063456--47063678	79	2.8	80	84	8	292	25	21	27	26	1.99
47063456--47063680	119	1.9	120	83	8	298	24	21	27	26	1.99
47063456--47063680	40	5.7	40	87	5	289	24	21	27	26	1.99
47063463--47063713	79	3.2	79	81	10	280	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427