Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  121  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31954293--31954518
112
2.0
113
99
0
445
34
11
19
34
1.88
31962135--31962159
2
12.5
2
100
0
50
52
0
0
48
1.00
31962524--31962575
10
5.1
10
83
2
50
25
5
1
67
1.23
31962524--31962573
20
2.5
20
80
6
57
24
6
2
68
1.23
31963295--31963328
18
1.9
18
94
5
61
26
8
5
58
1.51
31968937--31968978
16
2.6
16
84
0
57
14
7
0
78
0.95
31968940--31968986
10
4.9
10
82
7
53
12
6
0
80
0.88
31968937--31968993
26
2.2
26
84
6
71
14
5
0
80
0.87
31968937--31969047
36
3.1
36
78
12
106
22
3
0
73
0.98
31968965--31969026
21
3.0
21
88
2
90
25
0
0
74
0.82
31968979--31969047
28
2.7
26
79
16
72
27
1
0
71
0.95
31972359--31972396
13
2.8
13
88
4
58
42
0
13
44
1.43
31972410--31972461
10
5.1
10
83
2
59
25
5
0
69
1.10
31973175--31973208
18
1.9
18
94
5
61
26
8
5
58
1.51
31973762--31973876
40
3.0
39
76
13
121
39
13
21
25
1.91
31973755--31974183
77
5.6
77
80
4
384
41
13
19
26
1.88
31973793--31974183
154
2.5
152
81
2
460
41
14
18
25
1.89
31974070--31974190
40
3.1
40
67
7
104
42
15
15
26
1.87
31973941--31974428
262
1.9
262
83
0
645
40
14
18
26
1.89
31974192--31974428
77
3.1
77
83
1
296
38
14
19
27
1.91
31974315--31974428
40
2.9
40
77
12
137
38
15
21
24
1.92
31974290--31974410
37
3.2
36
77
11
125
40
17
20
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31977951--31977991
21
2.0
21
90
0
64
29
21
29
19
1.98
31990254--31990330
38
2.0
38
100
0
154
41
20
5
32
1.75
31999761--31999834
37
2.0
37
100
0
148
40
10
16
32
1.83
32003824--32004052
76
3.0
76
86
6
284
55
9
8
27
1.60
32003846--32004052
77
2.7
77
87
3
274
57
9
8
25
1.58
32006346--32006382
16
2.4
16
86
4
58
59
5
0
35
1.20
32006379--32006756
101
3.7
103
86
8
533
53
15
0
29
1.46
32006916--32007039
60
2.1
56
80
14
128
50
16
0
31
1.51
32006949--32007061
58
1.9
59
90
3
183
50
14
0
34
1.49
32007554--32007615
25
2.5
24
77
10
72
58
0
1
40
1.08
32027877--32028060
40
4.6
39
75
6
138
26
23
27
22
2.00
32027917--32028105
80
2.4
81
77
4
186
23
24
29
22
1.99
32034957--32035188
46
4.9
49
72
16
222
23
21
27
27
1.99
32035004--32035172
47
3.6
47
77
13
213
23
21
27
27
1.99
32034955--32035188
93
2.5
93
95
0
423
23
21
27
26
1.99
32038093--32038125
17
2.0
17
88
5
50
36
12
0
51
1.39
32038409--32038820
46
9.0
46
90
2
578
21
23
14
40
1.90
32042361--32042386
10
2.6
10
100
0
52
46
19
0
34
1.50
32051724--32051768
21
2.1
21
84
8
56
55
0
2
42
1.12
32053397--32053428
16
2.0
16
93
0
55
40
0
0
59
0.97
32054804--32054835
16
2.0
16
100
0
64
50
0
6
43
1.27
32058449--32058532
26
3.2
26
96
0
150
36
25
4
33
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32069403--32069622
30
7.5
29
88
4
291
33
15
25
25
1.95
32069401--32069622
119
1.9
117
88
3
338
33
14
25
26
1.95
32072132--32072189
26
2.2
26
93
0
98
36
24
5
34
1.78
32073981--32074008
14
2.0
14
100
0
56
42
0
0
57
0.99
32073989--32074013
12
2.1
12
100
0
50
44
0
0
56
0.99
32076666--32076918
133
1.9
133
87
3
375
34
20
16
28
1.94
32077947--32077988
2
21.0
2
100
0
84
50
0
0
50
1.00
32086365--32086448
30
2.7
30
81
9
96
52
2
5
39
1.39
32086295--32086448
31
5.1
30
68
18
88
51
3
5
39
1.40
32086295--32086575
119
2.4
120
86
7
376
52
3
5
38
1.43
32086298--32086592
59
4.9
58
67
23
150
52
3
5
38
1.41
32087091--32087120
11
2.8
11
95
5
53
20
0
0
80
0.72
32087091--32087120
5
5.8
5
92
7
51
20
0
0
80
0.72
32090987--32091015
11
2.7
11
94
5
51
17
0
0
82
0.66
32092776--32092807
2
16.0
2
100
0
64
50
0
0
50
1.00
32093516--32093660
40
3.6
41
83
6
172
25
24
26
23
2.00
32099959--32100111
57
2.7
56
86
2
216
28
15
21
33
1.94
32101451--32101484
13
2.6
13
100
0
68
8
23
38
29
1.85
32105360--32105422
21
3.0
21
71
2
54
36
12
20
30
1.90
32109223--32109477
127
2.0
125
95
1
456
21
21
12
43
1.85
32110864--32110912
18
2.5
20
83
9
66
46
6
2
44
1.39
32116089--32116119
2
15.5
2
100
0
62
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32119734--32119762
2
15.0
2
92
7
51
51
0
0
48
1.00
32119733--32119759
13
2.1
13
100
0
54
55
0
0
44
0.99
32123457--32123528
36
2.0
36
88
0
108
34
18
20
26
1.95
32130638--32130662
13
1.9
13
100
0
50
24
8
16
52
1.70
32140546--32140588
18
2.4
19
81
18
56
72
0
4
23
1.04
32141631--32141668
19
2.0
19
90
10
60
52
5
7
34
1.53
32162975--32163081
26
4.1
26
93
0
187
35
24
7
32
1.83
32164332--32164377
21
2.1
22
88
4
67
30
19
30
19
1.97
32166278--32166319
22
1.9
22
90
0
66
33
7
21
38
1.81
32167059--32167142
41
2.0
41
100
0
168
30
17
14
36
1.90
32173427--32173467
15
2.7
15
88
0
55
48
0
14
36
1.44
32173509--32173550
2
21.0
2
100
0
84
50
0
0
50
1.00
32173620--32173923
3
102.0
3
76
11
236
62
1
4
30
1.26
32173771--32173813
16
2.6
17
82
10
54
65
0
4
30
1.13
32174538--32174564
2
13.5
2
100
0
54
51
0
0
48
1.00
32181899--32181927
2
15.0
2
92
7
51
51
0
0
48
1.00
32182379--32182418
17
2.2
17
86
8
53
22
0
0
77
0.77
32187817--32187875
21
2.8
21
81
0
73
27
33
27
11
1.92
32189981--32190089
37
2.9
37
88
0
164
26
30
19
23
1.98
32190235--32190419
48
3.8
48
89
4
273
30
25
7
36
1.83
32190235--32190418
98
1.9
97
88
4
282
30
25
7
36
1.83
32190389--32190629
47
5.1
47
91
0
365
26
29
11
33
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32190529--32190600
22
3.1
22
64
24
58
23
29
13
33
1.93
32198889--32199150
46
5.7
46
93
0
398
39
14
23
22
1.91
32198839--32199150
138
2.3
130
87
4
426
39
15
23
22
1.92
32202930--32203035
26
4.1
26
91
0
176
33
6
23
36
1.81
32207192--32207216
3
8.3
3
100
0
50
36
0
0
64
0.94
32218806--32218839
2
17.0
2
100
0
68
50
0
0
50
1.00
32225640--32225672
17
2.0
16
94
5
57
66
0
0
33
0.92
32226565--32226599
18
2.0
18
88
5
54
68
0
0
31
0.90
32226889--32226925
19
1.9
19
100
0
74
35
16
10
37
1.83
32226892--32226933
19
2.3
19
88
8
61
38
11
14
35
1.83
32227279--32227476
44
4.5
45
84
3
240
23
27
15
33
1.95
32227279--32227550
44
6.1
45
76
9
234
25
26
15
31
1.96
32227279--32227460
87
2.1
90
85
5
246
24
28
14
32
1.95
32227490--32227784
78
3.8
78
90
1
448
25
23
19
31
1.98
32239557--32239591
18
2.0
18
88
5
54
68
0
0
31
0.90
32239879--32239942
17
3.6
17
85
8
83
35
9
12
42
1.75
32239911--32239948
17
2.5
15
87
12
51
34
15
10
39
1.82
32240070--32240110
21
2.0
21
85
0
55
9
2
14
73
1.19
32240283--32240423
69
2.0
69
82
2
167
34
17
26
21
1.95
32242950--32243008
30
1.9
31
86
3
84
50
1
18
28
1.56
32249098--32249173
31
2.5
31
83
10
95
50
7
14
27
1.71
32253488--32253517
8
3.9
8
91
8
53
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32253488--32253517
15
1.9
15
93
6
51
66
0
0
33
0.92
32255888--32255966
39
2.0
39
100
0
158
26
15
22
35
1.94
32256503--32256581
28
2.8
28
88
0
113
34
10
25
30
1.89
32261298--32261398
28
3.5
28
84
4
103
28
14
27
28
1.96
32261327--32261398
29
2.5
28
88
2
99
29
15
27
27
1.96
32263182--32263225
21
2.1
21
82
0
52
31
4
6
56
1.46
32265678--32266040
141
2.6
140
82
5
374
28
9
9
51
1.67
32266180--32266222
2
22.0
2
95
4
79
51
0
0
48
1.00
32272052--32272131
29
3.0
25
75
15
70
32
2
1
63
1.15
32272047--32272131
19
4.6
18
77
16
84
34
3
1
61
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427