Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  321  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93488589--93488700
31
3.7
31
83
8
135
25
25
17
31
1.97
93488724--93488815
42
2.2
42
94
0
157
35
21
13
29
1.91
93488960--93489105
26
5.8
26
89
5
230
25
22
24
27
2.00
93488960--93489105
51
2.9
52
92
6
248
25
22
24
27
2.00
93489907--93489990
27
3.1
27
89
3
125
20
25
22
32
1.98
93489907--93490007
27
3.7
27
85
5
116
20
22
22
33
1.97
93490056--93490512
27
17.0
27
76
11
134
35
9
20
35
1.85
93490205--93490412
27
7.8
26
85
5
247
39
8
23
28
1.84
93497049--93497097
17
2.8
18
74
22
50
24
18
22
34
1.96
93497919--93498085
40
4.2
40
79
6
169
25
21
27
25
1.99
93505047--93505095
17
2.8
18
74
22
50
24
18
22
34
1.96
93505918--93506084
40
4.2
40
79
6
169
25
21
27
25
1.99
93514599--93514632
2
17.0
2
100
0
68
50
0
0
50
1.00
93516056--93516154
49
2.0
49
100
0
198
40
18
8
33
1.80
93516466--93516552
43
2.0
43
84
4
113
28
31
17
22
1.97
93519625--93519734
43
2.6
43
92
0
175
26
15
16
41
1.88
93521111--93521146
17
2.1
17
94
0
63
44
11
19
25
1.83
93530812--93530849
12
3.1
13
81
14
53
65
0
0
34
0.93
93531754--93531778
6
4.2
6
100
0
50
32
0
36
32
1.58
93534226--93534256
10
3.1
10
95
0
53
61
12
0
25
1.32
93534804--93534918
25
4.5
25
75
8
90
31
18
26
24
1.97
93534882--93534967
24
3.6
24
75
10
77
34
20
25
18
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93534997--93535050
25
2.2
25
83
9
67
33
25
29
11
1.91
93536078--93536114
14
2.7
14
80
19
51
21
5
0
72
1.04
93539063--93539093
15
2.1
15
100
0
62
38
6
12
41
1.69
93539719--93539745
5
5.4
5
100
0
54
0
22
37
40
1.54
93547054--93547101
15
3.1
15
82
8
53
77
4
4
14
1.08
93547100--93547135
17
2.1
17
100
0
72
55
5
22
16
1.62
93559238--93559269
12
2.7
12
100
0
64
31
18
12
37
1.88
93560664--93560715
14
3.9
14
73
16
56
32
1
0
65
1.04
93560664--93560715
18
3.0
18
72
5
54
32
1
0
65
1.04
93567027--93567060
10
3.3
10
92
8
59
41
0
0
58
0.98
93567028--93567072
21
2.1
21
84
8
56
42
2
2
53
1.25
93570151--93570190
21
1.9
21
94
0
71
17
20
20
42
1.89
93573961--93574013
10
5.4
9
78
14
52
66
1
3
28
1.20
93576398--93576465
34
2.0
34
97
0
127
48
8
30
11
1.70
93576724--93576844
43
2.8
43
81
5
138
25
17
28
28
1.97
93577956--93578042
42
2.1
42
100
0
174
29
9
26
34
1.87
93584244--93584453
40
5.3
40
73
6
95
39
14
26
19
1.91
93584273--93584473
40
5.0
40
74
6
147
38
13
26
20
1.90
93587058--93587150
23
3.8
24
73
12
75
25
23
18
32
1.97
93588747--93588920
96
1.8
93
87
3
258
25
20
29
24
1.99
93588654--93588918
47
5.7
47
74
10
188
27
18
29
25
1.98
93591206--93591232
13
2.1
13
100
0
54
29
7
25
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93598054--93598189
26
5.3
26
81
0
157
34
30
16
17
1.93
93598054--93598189
52
2.6
52
85
1
193
34
30
16
17
1.93
93598041--93598186
78
1.9
77
82
4
186
35
30
16
17
1.92
93605081--93605168
43
2.1
42
93
2
149
22
18
31
27
1.97
93616605--93616699
26
3.7
26
81
0
100
37
29
11
21
1.88
93621183--93621313
47
2.8
47
91
0
208
34
27
16
21
1.95
93624085--93624133
3
16.3
3
83
8
64
71
0
0
28
0.86
93626566--93626593
14
2.0
14
100
0
56
50
0
21
28
1.49
93629878--93629985
43
2.5
44
89
4
166
30
26
14
27
1.95
93633562--93633701
27
5.2
27
78
13
155
34
23
24
17
1.96
93633562--93633704
54
2.7
54
91
3
227
34
23
24
17
1.96
93635287--93635342
26
2.2
26
100
0
112
35
26
7
30
1.83
93640670--93640803
26
5.2
26
95
0
232
36
25
5
32
1.80
93643875--93643932
30
1.9
30
82
6
73
27
36
25
10
1.89
93648156--93648193
6
5.9
7
90
9
55
57
0
26
15
1.38
93660608--93660633
13
2.0
13
100
0
52
23
15
7
53
1.67
93662620--93662650
13
2.3
14
94
5
55
83
0
0
16
0.64
93663156--93663189
15
2.2
16
89
5
52
26
0
0
73
0.83
93668962--93669013
18
2.9
17
80
5
59
1
28
0
69
0.99
93668920--93669009
15
6.2
15
69
19
50
5
33
2
58
1.33
93669238--93669274
3
12.3
3
100
0
74
32
0
0
67
0.91
93669773--93669876
21
5.2
21
67
21
80
40
22
25
12
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93669755--93669894
39
3.6
39
90
0
217
37
23
26
12
1.91
93675467--93675565
24
4.0
24
76
12
103
35
6
2
56
1.35
93675468--93675564
49
2.0
48
88
6
142
36
5
2
56
1.33
93684915--93684971
26
2.2
26
100
0
114
35
26
7
31
1.83
93691442--93691468
2
13.5
2
100
0
54
48
0
0
51
1.00
93692892--93692924
17
2.1
16
88
11
50
30
0
0
69
0.88
93692971--93693029
21
2.8
22
85
7
70
23
0
6
69
1.12
93693000--93693047
26
1.9
24
87
8
69
31
0
4
64
1.12
93698204--93698287
33
2.5
33
78
3
89
21
10
42
25
1.85
93698422--93698475
18
3.0
18
80
0
63
9
31
35
24
1.87
93701221--93701766
151
3.6
152
87
6
816
28
5
7
58
1.47
93701803--93701869
16
4.1
16
74
1
62
20
2
5
70
1.22
93702362--93702406
3
15.3
3
82
13
58
0
35
0
64
0.94
93702362--93702406
13
3.1
15
84
15
58
0
35
0
64
0.94
93702369--93702406
16
2.4
16
91
8
60
0
31
0
68
0.90
93705915--93706006
45
2.0
45
100
0
184
31
17
10
40
1.84
93708403--93708441
19
2.0
20
90
5
62
20
0
7
71
1.10
93708422--93708467
25
1.9
23
86
8
65
28
0
8
63
1.24
93712845--93713456
311
2.0
304
94
2
1073
41
21
12
25
1.87
93713697--93713803
43
2.5
43
84
3
135
36
24
13
26
1.92
93726276--93726365
42
2.1
42
86
8
121
21
32
22
24
1.98
93737991--93738048
3
19.3
3
92
0
98
67
0
1
31
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93742424--93742484
31
2.0
31
87
6
88
49
14
14
21
1.79
93742813--93742858
19
2.4
19
85
10
58
34
4
0
60
1.16
93746492--93746574
41
2.0
41
97
0
157
22
12
18
46
1.81
93746793--93746897
52
2.0
52
96
0
192
27
16
12
43
1.83
93748883--93748966
42
2.0
42
92
0
141
45
14
11
28
1.80
93748994--93749037
19
2.4
18
88
7
70
45
11
2
40
1.53
93752814--93752893
42
1.9
42
97
0
151
46
16
6
31
1.71
93760619--93760659
9
4.7
9
90
3
66
56
19
2
21
1.54
93760655--93760685
9
3.4
9
95
0
53
35
25
9
29
1.88
93760631--93760685
18
3.1
18
86
0
65
43
25
5
25
1.76
93762182--93762359
46
3.8
46
76
10
200
30
29
19
20
1.97
93762190--93762361
93
1.8
93
93
0
299
29
30
19
20
1.97
93764081--93764178
38
2.5
41
72
13
96
24
19
28
27
1.98
93764081--93764214
39
3.4
40
74
8
114
25
19
27
27
1.99
93764326--93764366
18
2.3
18
87
8
57
48
0
19
31
1.49
93772671--93772725
26
2.2
24
81
12
74
52
10
7
29
1.63
93772677--93772727
26
2.0
26
100
0
102
54
7
7
29
1.57
93784129--93784158
14
2.1
14
93
0
51
46
16
0
36
1.47
93784483--93784653
43
4.0
42
73
10
159
29
26
18
24
1.98
93792685--93792734
26
1.9
26
84
8
66
36
0
30
34
1.58
93795667--93795795
39
3.3
39
94
0
231
23
32
19
24
1.97
93796446--93796477
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93803681--93803796
39
2.9
39
94
3
198
23
34
19
22
1.97
93807508--93807683
46
3.8
46
80
10
214
21
21
28
28
1.98
93807505--93807676
93
1.8
93
94
0
308
21
21
29
27
1.99
93810128--93810162
18
1.9
18
88
0
52
28
11
17
42
1.83
93810149--93810199
21
2.4
21
87
6
68
45
17
7
29
1.77
93812333--93812735
45
8.7
45
85
5
423
23
30
19
27
1.98
93817139--93817183
14
3.0
15
90
6
65
55
13
15
15
1.69
93820641--93820847
45
4.5
45
85
3
252
23
31
18
25
1.97
93821137--93821220
26
3.2
26
96
0
150
33
4
25
36
1.77
93824412--93824441
12
2.5
12
100
0
60
10
26
50
13
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427