genome.fa.s11.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  135  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36324212--36324341	40	3.2	40	80	2	154	24	23	26	25	2.00
36327579--36327609	13	2.4	13	94	0	53	19	0	3	77	0.90
36327698--36327732	16	2.1	17	89	5	54	42	0	0	57	0.99
36327797--36327845	16	3.2	16	72	19	50	36	0	2	61	1.08
36327783--36327858	29	2.7	29	78	15	86	36	0	2	60	1.11
36327826--36327887	20	2.8	22	77	22	67	35	0	1	62	1.05
36327797--36327864	30	2.3	30	82	14	79	36	0	1	61	1.05
36327827--36327888	10	5.6	11	71	25	51	35	0	1	62	1.05
36328004--36328040	15	2.3	17	81	9	51	59	5	2	32	1.34
36329220--36329303	44	1.9	44	87	0	123	25	17	25	32	1.97
36340362--36340486	58	2.2	59	75	7	141	51	4	1	43	1.30
36340977--36341016	19	2.1	19	85	0	53	32	2	5	60	1.32
36343483--36343520	14	2.7	15	84	12	53	13	18	0	68	1.21
36343494--36343519	7	3.7	7	100	0	52	15	15	0	69	1.20
36343569--36343593	10	2.5	10	100	0	50	20	20	0	60	1.37
36344853--36344908	26	2.1	28	90	6	89	57	12	10	19	1.64
36345116--36345156	13	2.7	15	75	24	50	73	2	0	24	0.96
36346908--36347175	47	5.7	46	79	11	242	28	17	28	25	1.98
36346908--36347175	94	2.9	92	82	8	312	28	17	28	25	1.98
36346908--36347175	141	1.9	139	83	10	348	28	17	28	25	1.98
36348757--36348830	35	2.1	35	97	0	139	20	9	25	44	1.81
36349656--36349698	23	1.9	23	85	4	61	27	16	16	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36350001--36350104	54	1.9	53	84	5	138	36	12	21	29	1.90
36351799--36351866	31	2.2	31	83	0	91	32	16	11	39	1.84
36355904--36355934	8	3.8	8	95	4	53	90	0	0	9	0.46
36355904--36355935	9	3.7	9	91	8	57	90	0	0	9	0.45
36356089--36356129	20	2.0	20	86	9	57	73	4	2	19	1.13
36358627--36360008	282	4.9	282	86	3	1808	25	22	17	33	1.96
36358676--36359993	555	2.4	558	87	2	1855	26	22	17	33	1.96
36364793--36364884	39	2.3	39	83	10	107	40	2	3	54	1.29
36378233--36378317	45	1.9	44	85	7	118	44	9	12	32	1.75
36390339--36390403	32	2.0	32	88	5	96	61	1	1	35	1.15
36395721--36395865	71	2.0	72	95	1	265	40	10	13	36	1.78
36402905--36402946	15	2.8	15	88	0	66	57	14	14	14	1.66
36416641--36416698	30	1.9	30	96	0	107	29	15	18	36	1.92
36425377--36425513	29	4.7	30	72	13	108	29	29	18	22	1.97
36425377--36425545	58	2.9	58	92	0	277	28	28	18	23	1.98
36426026--36426066	19	2.2	19	100	0	82	36	4	17	41	1.71
36426344--36426426	34	2.5	34	86	5	107	25	19	24	31	1.98
36426831--36426859	14	2.1	14	93	6	51	55	0	13	31	1.39
36434388--36434510	48	2.6	48	93	0	210	34	25	21	19	1.96
36436013--36436230	46	4.7	46	80	12	234	26	19	30	22	1.98
36436016--36436227	94	2.3	90	88	4	300	27	18	30	23	1.98
36436010--36436274	90	2.9	89	78	11	268	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36436018--36436267	46	5.5	44	78	11	148	27	18	29	24	1.98
36439579--36439686	48	2.2	48	93	6	184	34	21	22	22	1.97
36443739--36443793	16	3.4	16	84	2	74	50	30	3	14	1.60
36444435--36444545	29	3.9	28	85	2	132	27	13	29	28	1.94
36448890--36448950	32	1.9	32	93	0	104	50	16	19	13	1.77
36448898--36448948	16	3.2	16	72	10	59	49	15	19	15	1.80
36448905--36448956	16	3.2	16	75	8	52	51	17	19	11	1.75
36449053--36449099	19	2.5	19	86	3	60	27	17	36	19	1.93
36449180--36449286	29	3.7	29	72	6	92	26	16	32	24	1.96
36459581--36459606	13	2.0	13	100	0	52	46	30	0	23	1.53
36474388--36474485	28	3.5	28	95	1	171	29	13	26	30	1.94
36478297--36478322	13	2.0	13	100	0	52	7	30	30	30	1.85
36478729--36478798	36	1.9	36	100	0	140	35	14	22	27	1.93
36483211--36483282	27	2.6	28	88	2	83	38	26	5	29	1.79
36483219--36483282	28	2.3	27	94	2	110	37	28	6	28	1.81
36483385--36483475	27	3.3	26	87	7	128	17	23	24	35	1.95
36483385--36483497	27	4.2	26	85	6	91	19	23	20	37	1.95
36487626--36487691	28	2.4	28	92	2	116	37	25	7	28	1.83
36487792--36487906	27	4.3	26	81	10	124	20	21	21	36	1.95
36490515--36490665	40	3.8	40	77	13	134	27	23	26	22	2.00
36490551--36490681	40	3.3	40	79	2	156	25	23	27	23	2.00
36498567--36498697	40	3.3	40	78	2	147	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36509891--36509945	28	2.0	28	88	0	83	23	16	32	27	1.96
36509892--36509961	28	2.5	28	80	2	77	28	15	32	22	1.95
36510262--36510737	27	17.7	27	80	7	425	37	20	11	30	1.88
36510702--36510763	27	2.3	27	88	0	88	35	20	16	27	1.94
36515904--36516058	44	3.6	42	77	10	161	31	26	16	25	1.97
36520800--36520876	37	2.1	37	97	0	145	37	19	23	19	1.94
36520864--36520926	22	2.9	22	81	9	65	34	14	28	22	1.93
36522213--36522335	29	4.3	29	80	6	117	28	26	14	30	1.95
36522546--36522588	8	5.4	8	80	0	50	9	23	18	48	1.76
36522546--36522588	16	2.7	16	96	0	77	9	23	18	48	1.76
36526709--36526820	28	4.0	28	76	11	102	27	29	15	27	1.96
36526709--36526807	29	3.5	29	81	4	112	27	31	16	25	1.96
36527030--36527088	16	3.7	16	86	0	82	10	22	18	49	1.77
36532078--36532153	26	3.0	25	80	5	89	35	17	7	39	1.78
36532090--36532153	26	2.5	25	89	5	92	37	15	7	39	1.77
36532294--36532329	18	2.0	18	88	0	54	19	22	0	58	1.40
36536030--36536107	21	3.8	20	74	12	59	66	2	1	29	1.13
36536032--36536111	10	7.7	10	71	17	56	67	2	1	28	1.11
36537501--36537576	37	2.1	36	83	11	93	40	2	2	53	1.28
36545257--36545332	11	6.8	11	70	24	52	42	1	2	53	1.23
36545275--36545401	68	1.9	68	83	6	168	44	3	3	48	1.34
36546532--36546608	22	3.5	22	89	0	109	29	28	29	11	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36548674--36548701	14	2.0	14	100	0	56	14	21	14	50	1.78
36551468--36551503	12	3.0	12	91	0	54	27	22	5	44	1.75
36559796--36559970	71	2.5	70	81	2	192	29	14	22	33	1.94
36559974--36560158	72	2.6	73	86	4	241	26	16	23	33	1.95
36559796--36560297	198	2.6	191	86	3	662	26	15	23	34	1.95
36561747--36561952	40	5.2	40	81	3	209	24	24	23	27	2.00
36561747--36561954	80	2.6	80	83	3	231	24	24	23	27	2.00
36562990--36563023	13	2.5	13	90	4	50	20	11	8	58	1.59
36562826--36563152	140	2.3	142	92	3	525	24	17	19	38	1.93
36563158--36563298	72	2.0	72	97	0	264	33	15	17	33	1.92
36563252--36563347	49	2.0	49	97	0	183	30	16	20	32	1.95
36563180--36563419	121	2.0	121	94	0	417	31	16	18	34	1.93
36563301--36563655	79	4.7	75	86	5	439	31	16	19	32	1.94
36563301--36563655	151	2.4	151	86	4	459	31	16	19	32	1.94
36563577--36563750	95	1.8	95	81	2	215	29	19	18	32	1.96
36563672--36564033	79	4.5	78	76	11	316	30	16	17	34	1.93
36563830--36563991	88	1.8	87	84	5	218	28	17	17	35	1.93
36564015--36564076	30	2.1	30	90	6	99	19	9	29	41	1.83
36563475--36564244	253	3.1	246	82	7	793	28	16	18	35	1.93
36565490--36565520	2	15.5	2	93	0	53	48	3	0	48	1.17
36565673--36565704	15	2.1	15	94	0	55	31	0	6	62	1.20
36570111--36570154	6	7.2	6	92	2	52	15	25	0	59	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36570112--36570154	12	3.5	12	87	3	59	16	25	0	58	1.38
36570111--36570153	18	2.3	19	88	4	61	16	25	0	58	1.38
36571983--36572078	45	2.1	46	84	7	124	38	6	2	53	1.38
36572486--36572546	31	2.0	31	100	0	122	31	22	6	39	1.80
36582152--36582179	2	14.0	2	100	0	56	50	0	0	50	1.00
36587317--36587376	20	3.0	20	80	0	75	66	1	8	23	1.28
36587317--36587376	10	6.0	10	84	5	68	66	1	8	23	1.28
36587396--36587428	13	2.4	14	90	5	50	42	12	0	45	1.41
36588780--36588818	21	1.9	20	89	5	60	48	20	2	28	1.62
36594040--36594085	23	2.0	23	100	0	92	34	17	26	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427