genome.fa.s11.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  148  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40469910--40469968	31	1.9	30	83	10	75	44	3	16	35	1.65
40478072--40478142	35	2.0	35	97	0	133	22	18	28	30	1.97
40482223--40482265	18	2.4	18	84	0	59	25	25	18	30	1.98
40483943--40484047	31	3.4	31	71	10	108	35	2	7	54	1.44
40483934--40484050	61	1.9	61	92	3	200	37	2	6	52	1.42
40489228--40489266	15	2.5	16	79	8	53	43	2	7	46	1.46
40490371--40490428	28	2.0	29	93	3	100	29	13	10	46	1.77
40496592--40496703	43	2.6	42	81	5	145	29	24	16	30	1.96
40501146--40501175	14	2.1	14	93	0	51	30	13	16	40	1.87
40508956--40508985	14	2.1	14	93	0	51	30	13	16	40	1.87
40515078--40515110	17	1.9	17	88	11	50	9	33	15	42	1.78
40522821--40522853	17	1.9	17	88	11	50	9	33	15	42	1.78
40525033--40525084	3	17.3	3	100	0	104	67	0	0	32	0.91
40529513--40529574	24	2.5	25	78	19	67	64	6	6	22	1.40
40535279--40535376	28	3.5	28	81	4	99	29	15	24	30	1.95
40537290--40537327	19	2.0	19	85	10	51	68	0	10	21	1.19
40544676--40544755	5	15.8	5	71	21	60	1	20	3	75	1.03
40544677--40544754	26	3.0	26	76	12	79	1	20	3	74	1.05
40544729--40544780	19	2.6	19	85	11	61	7	11	3	76	1.12
40544923--40544968	3	15.3	3	100	0	92	67	0	0	32	0.91
40548109--40548222	43	2.7	42	81	5	122	28	22	17	30	1.97
40559444--40559493	25	2.0	25	100	0	100	36	16	28	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40565133--40565301	40	4.2	40	78	4	164	23	26	22	28	1.99
40573136--40573302	40	4.2	40	82	2	185	25	27	21	25	1.99
40573136--40573302	80	2.1	79	83	7	205	25	27	21	25	1.99
40574127--40574172	17	2.5	19	74	22	53	34	23	17	23	1.96
40576313--40576557	40	6.2	40	84	4	293	25	20	26	26	1.99
40583509--40583557	17	2.8	18	74	22	50	24	18	22	34	1.96
40584379--40584545	40	4.2	40	79	6	169	25	21	27	25	1.99
40587987--40588060	29	2.5	28	84	4	85	31	33	14	20	1.93
40592245--40592279	17	2.1	17	88	0	52	42	8	0	48	1.33
40598474--40598513	19	2.1	19	100	0	80	37	10	5	47	1.59
40598675--40598707	17	2.0	17	88	5	50	60	0	3	36	1.12
40599816--40599895	40	2.0	40	90	0	124	20	11	18	50	1.77
40609056--40609171	44	2.5	46	80	6	130	22	31	20	25	1.98
40609151--40609264	47	2.4	46	84	7	140	24	29	17	28	1.97
40609002--40609326	94	3.5	91	73	14	277	22	30	19	27	1.98
40609010--40609363	187	1.9	184	80	9	403	23	29	19	27	1.98
40613678--40613709	15	2.1	16	94	5	57	62	21	0	15	1.32
40614800--40614853	27	2.0	27	85	3	74	35	20	22	22	1.96
40614863--40615026	27	6.1	27	82	0	184	25	22	18	33	1.96
40621670--40621733	33	2.0	32	84	3	83	35	20	23	20	1.96
40622360--40622514	27	5.7	27	89	0	220	23	21	19	35	1.96
40636353--40636520	40	4.2	40	84	1	194	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40638923--40638964	20	2.1	20	95	0	75	19	16	23	40	1.91
40645656--40645701	24	1.9	24	86	0	65	30	2	19	47	1.61
40647865--40647928	31	2.1	31	84	0	83	26	21	14	37	1.92
40648121--40648310	24	8.0	24	89	4	269	26	21	22	28	1.99
40648120--40648311	47	4.0	48	88	4	273	26	21	22	29	1.99
40648121--40648311	71	2.7	72	87	4	280	26	21	22	29	1.99
40648365--40648407	20	2.2	20	100	0	86	32	18	11	37	1.87
40648444--40648491	25	1.9	25	82	0	60	25	14	25	35	1.94
40649733--40650132	27	14.8	27	85	3	473	39	7	23	29	1.83
40650138--40650227	27	3.3	27	85	3	119	32	10	17	40	1.83
40650121--40650227	54	2.0	54	81	7	128	30	10	20	38	1.86
40650138--40650242	27	3.9	27	79	9	90	34	9	17	39	1.82
40652873--40652936	31	2.1	31	90	0	101	25	23	15	35	1.94
40653129--40653294	24	7.0	24	90	4	239	25	21	24	28	1.99
40653129--40653294	71	2.3	71	90	3	253	25	21	24	28	1.99
40653129--40653294	47	3.5	48	88	4	239	25	21	24	28	1.99
40653353--40653409	9	5.9	9	73	15	51	35	21	8	35	1.84
40653349--40653411	20	3.2	20	95	0	117	31	19	12	36	1.89
40653448--40653495	25	1.9	25	95	0	87	27	18	25	29	1.98
40654737--40655135	27	14.8	27	84	3	509	39	8	23	28	1.84
40655124--40655230	27	4.0	27	78	4	101	31	9	19	39	1.84
40656901--40656950	21	2.4	21	93	0	91	40	10	4	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40665157--40665364	40	5.2	40	88	2	301	21	28	24	25	1.99
40668650--40668832	40	4.6	40	83	3	181	23	26	22	27	1.99
40676381--40676507	40	3.2	40	86	0	164	22	28	22	26	1.99
40676398--40676549	40	3.8	40	81	5	155	23	25	23	28	1.99
40681293--40681512	46	4.8	44	76	12	183	23	29	20	27	1.98
40681336--40681509	94	1.9	92	84	7	235	21	29	21	27	1.99
40691041--40691152	55	2.1	55	84	1	145	28	23	29	18	1.98
40695781--40695840	32	1.9	30	86	3	75	26	20	10	43	1.83
40700294--40700382	44	2.0	44	100	0	178	40	13	4	41	1.65
40709934--40709972	12	3.2	12	92	0	60	30	0	48	20	1.50
40713679--40713724	22	2.1	22	84	8	58	50	6	0	43	1.28
40714946--40714995	19	2.6	19	76	20	50	26	20	32	22	1.98
40717995--40718049	28	2.0	28	96	0	101	38	3	16	41	1.66
40718383--40718490	49	2.1	51	91	5	175	27	13	30	27	1.94
40719503--40719792	27	10.7	27	85	2	323	28	23	7	40	1.83
40719785--40720022	27	8.7	27	80	3	210	40	18	8	32	1.81
40720041--40720118	27	2.9	27	77	11	88	37	21	19	21	1.95
40721369--40721443	9	7.7	9	69	16	51	34	10	20	34	1.87
40721376--40721447	11	7.1	11	67	17	57	36	13	18	31	1.90
40721372--40721460	40	2.2	40	92	2	144	34	13	19	32	1.90
40721369--40721447	20	4.0	20	93	0	140	35	12	18	32	1.89
40721502--40721622	23	5.1	23	89	8	190	29	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40721502--40721645	23	6.0	24	84	11	181	29	20	21	28	1.98
40721501--40721622	48	2.6	48	93	1	210	30	20	20	28	1.98
40721837--40721900	31	2.1	31	90	0	101	35	15	23	25	1.94
40727342--40727366	9	2.8	9	100	0	50	48	0	24	28	1.52
40728431--40728508	40	2.0	40	82	5	95	35	17	24	21	1.95
40728510--40728595	40	2.2	40	89	0	127	36	13	27	22	1.92
40728531--40728617	40	2.2	40	85	0	111	33	14	29	21	1.94
40734529--40734670	40	3.5	40	83	1	124	27	23	26	22	1.99
40734568--40734696	40	3.2	39	84	6	152	24	22	27	25	2.00
40742515--40742681	40	4.2	40	79	6	169	26	22	26	24	2.00
40747879--40748087	40	5.2	40	86	3	296	25	23	28	22	1.99
40747879--40748087	79	2.6	78	89	2	292	25	23	28	22	1.99
40754260--40754364	47	2.2	47	96	0	192	27	30	7	34	1.85
40758765--40759075	40	7.9	40	94	3	551	25	30	25	19	1.98
40758765--40759075	79	4.0	80	95	3	551	25	30	25	19	1.98
40759116--40759207	38	2.4	38	83	0	112	25	25	20	29	1.99
40761147--40761251	47	2.2	47	96	0	192	27	30	7	34	1.85
40766708--40766886	39	4.5	39	86	4	218	19	22	26	31	1.98
40768697--40768739	22	2.0	22	95	0	77	13	20	16	48	1.80
40768805--40768862	28	2.1	27	81	6	64	27	6	10	55	1.59
40770948--40771017	27	2.6	27	90	2	104	31	28	12	27	1.93
40771013--40771070	29	2.0	29	100	0	116	27	27	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40772725--40772780	21	2.6	22	77	8	71	28	41	12	17	1.86
40773184--40773231	24	2.0	24	84	4	62	43	4	22	29	1.72
40782535--40782803	46	5.8	46	72	11	181	29	27	20	22	1.98
40782589--40782753	47	3.5	47	75	14	187	30	28	17	23	1.97
40782542--40782807	93	2.9	93	90	0	406	28	27	20	22	1.99
40785527--40785595	30	2.3	30	85	7	97	59	17	14	8	1.60
40785527--40785595	15	4.7	15	80	8	79	59	17	14	8	1.60
40788579--40788745	46	3.6	46	75	16	173	31	28	18	21	1.97
40788634--40788848	47	4.6	47	80	13	237	30	27	18	23	1.97
40788588--40788801	93	2.3	93	90	1	322	30	27	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427