genome.fa.s11.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  155  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42715726--42715813	27	3.3	27	85	3	106	27	23	7	40	1.82
42715816--42715944	27	4.8	27	73	5	100	42	19	10	27	1.83
42715923--42716008	27	3.1	27	73	17	77	41	16	8	33	1.78
42716941--42717010	25	2.8	25	89	4	97	25	27	22	24	2.00
42716941--42717037	25	4.0	23	81	10	86	27	24	22	24	2.00
42717158--42717249	42	2.2	42	92	0	148	29	14	21	34	1.93
42718929--42719010	42	2.0	42	82	0	101	32	21	17	28	1.96
42729035--42729176	40	3.6	40	93	2	234	25	27	23	23	2.00
42730774--42730810	19	1.9	19	100	0	74	56	0	5	37	1.22
42737602--42737759	76	2.1	76	100	0	316	40	13	15	29	1.87
42739883--42740377	255	1.9	255	97	0	936	36	18	15	29	1.92
42751185--42751273	31	2.9	30	80	11	99	39	4	4	51	1.42
42754928--42755086	27	5.9	27	80	11	166	33	21	24	20	1.97
42754946--42755089	54	2.7	54	92	2	227	34	22	24	18	1.97
42756325--42756357	16	2.1	16	94	0	57	39	12	9	39	1.74
42757982--42758049	18	3.8	18	94	0	109	29	10	26	33	1.89
42757983--42758054	9	8.0	9	73	0	54	30	8	26	34	1.86
42761326--42761359	16	2.1	16	88	0	50	52	0	23	23	1.47
42762029--42762087	9	6.7	9	77	9	50	55	0	0	44	0.99
42762107--42762165	30	1.9	30	86	10	84	62	1	1	33	1.15
42762105--42762156	25	2.1	25	82	13	63	61	1	1	34	1.18
42766365--42766395	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42766843--42766869	2	13.5	2	100	0	54	51	0	0	48	1.00
42768311--42768380	31	2.2	30	82	14	79	55	5	1	37	1.32
42768369--42768413	17	2.7	16	83	10	54	60	2	2	35	1.22
42771017--42771052	13	2.8	13	91	0	63	22	19	30	27	1.98
42771060--42771119	18	3.3	18	78	0	75	38	10	20	31	1.85
42771160--42771206	18	2.5	19	83	13	62	34	12	23	29	1.92
42771185--42771304	58	2.1	58	93	0	204	36	10	19	33	1.86
42771096--42771376	131	2.1	133	88	5	408	36	11	19	33	1.87
42771372--42771423	24	2.2	24	96	0	95	36	15	7	40	1.76
42771488--42771563	16	4.8	16	72	6	64	30	17	23	28	1.97
42777766--42777826	30	2.0	30	90	0	95	26	3	13	57	1.51
42779995--42780058	31	2.1	31	96	0	119	23	21	15	39	1.92
42780249--42780341	47	2.0	48	87	10	138	26	23	21	27	1.99
42780248--42780342	23	4.0	23	84	11	122	26	23	21	29	1.99
42780393--42780431	20	2.0	20	100	0	78	30	20	10	38	1.86
42780475--42780522	25	1.9	25	86	0	69	27	14	22	35	1.93
42780547--42780672	63	2.0	63	100	0	252	31	15	14	38	1.88
42788049--42788111	31	2.1	31	93	3	110	23	22	14	39	1.91
42788323--42788395	23	3.1	23	92	3	119	28	21	20	28	1.98
42788301--42788396	24	4.0	23	84	9	122	27	22	20	29	1.99
42788302--42788395	47	2.0	49	87	8	140	27	23	21	27	1.99
42788447--42788506	20	3.0	20	95	0	111	33	20	10	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42788447--42788501	11	5.4	11	70	16	55	30	20	10	38	1.87
42788548--42788594	24	2.0	24	86	0	67	25	17	25	31	1.97
42789647--42789707	32	1.9	32	90	6	97	27	6	18	47	1.73
42791114--42791155	20	2.1	21	91	8	70	50	14	9	26	1.73
42794833--42794913	37	2.2	37	93	0	135	24	32	22	20	1.98
42795072--42795196	48	2.6	48	88	1	180	30	25	8	36	1.85
42799001--42799349	40	8.9	40	79	6	340	25	29	23	21	1.99
42799010--42799349	79	4.3	79	88	4	449	25	29	23	22	1.99
42799010--42799310	119	2.5	118	83	6	358	25	29	23	21	1.99
42801588--42801668	37	2.2	37	93	0	135	24	32	22	20	1.98
42801827--42801951	48	2.6	48	88	1	180	30	25	8	36	1.85
42819397--42819568	59	2.9	58	91	1	272	20	15	32	31	1.94
42819754--42819805	24	2.2	24	86	6	70	19	3	26	50	1.65
42826760--42826848	43	2.1	42	81	6	99	26	17	22	32	1.97
42827912--42828008	42	2.3	42	89	3	142	13	20	38	27	1.90
42828973--42829061	44	2.0	44	97	0	169	29	20	26	23	1.99
42831085--42831192	41	2.7	40	82	5	128	20	31	15	32	1.94
42833435--42833639	40	5.2	40	94	1	333	24	21	27	26	2.00
42836829--42836930	45	2.3	45	89	0	150	36	11	20	31	1.89
42836835--42836941	45	2.4	45	85	3	126	37	12	19	30	1.88
42837255--42837305	23	2.1	25	82	7	61	52	5	5	35	1.50
42839973--42840124	43	3.6	43	76	5	139	27	19	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42840018--42840110	42	2.2	43	82	5	118	31	20	21	26	1.98
42841450--42841732	48	5.9	48	81	3	293	37	25	17	19	1.94
42841450--42841732	96	2.9	96	84	4	347	37	25	17	19	1.94
42841464--42841732	144	1.9	144	83	0	349	37	25	17	18	1.93
42843360--42843530	43	4.0	43	84	3	220	25	16	26	31	1.97
42844342--42845534	595	2.0	596	96	1	2176	27	22	17	32	1.96
42846302--42846469	40	4.2	40	82	1	185	24	26	22	26	2.00
42854328--42854494	40	4.2	40	82	2	185	24	26	22	26	2.00
42856936--42857101	40	4.2	39	82	5	183	23	27	22	26	2.00
42856936--42857101	79	2.1	79	83	6	203	23	27	22	26	2.00
42859405--42859628	40	5.6	40	87	3	299	25	26	23	24	2.00
42859405--42859629	81	2.8	80	87	4	319	25	27	23	24	2.00
42861930--42862020	39	2.3	39	94	0	155	42	20	14	21	1.88
42862402--42862539	38	3.6	37	75	9	125	33	22	19	24	1.97
42862431--42862559	38	3.3	38	81	6	118	31	21	20	27	1.98
42864857--42864887	16	1.9	16	93	0	53	41	6	16	35	1.74
42864873--42864916	19	2.3	18	84	7	52	47	2	15	34	1.58
42865009--42865054	22	2.1	22	84	8	58	39	0	15	45	1.46
42866853--42866891	21	1.9	20	89	5	60	46	20	0	33	1.51
42868055--42868161	18	5.8	19	88	8	168	37	14	11	36	1.83
42868055--42868161	35	2.9	36	91	6	171	37	14	11	36	1.83
42868046--42868169	54	2.3	54	81	13	164	36	14	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42868513--42868702	45	4.3	45	85	2	249	24	28	14	32	1.95
42868521--42868689	88	1.9	89	88	1	259	26	29	14	29	1.95
42868863--42869581	206	3.5	207	92	1	1140	28	24	17	29	1.97
42868863--42869575	207	3.5	207	92	1	1146	29	23	17	29	1.97
42869754--42869896	43	3.3	42	69	21	116	22	20	24	32	1.97
42869797--42869940	44	3.3	44	67	16	127	18	20	28	32	1.96
42869704--42870072	87	4.4	84	84	9	459	22	21	24	31	1.98
42869700--42870073	166	2.2	166	84	7	481	22	21	24	31	1.98
42870999--42871069	1	71.0	1	77	0	70	0	11	0	88	0.51
42871000--42871069	11	6.9	10	85	10	90	0	11	0	88	0.51
42870999--42871066	19	3.5	19	90	6	102	0	11	0	88	0.52
42871000--42871069	24	2.9	25	85	12	101	0	11	0	88	0.51
42870999--42871068	30	2.3	30	87	4	106	0	11	0	88	0.51
42876741--42876847	18	5.8	19	88	8	168	37	14	11	36	1.83
42876741--42876847	35	2.9	36	91	6	171	37	14	11	36	1.83
42882501--42882724	40	5.6	40	86	6	310	25	26	23	24	2.00
42882501--42882724	83	2.8	80	88	4	317	25	26	23	24	2.00
42890620--42890841	40	5.6	40	84	8	292	25	26	23	24	2.00
42890624--42890841	82	2.7	79	86	4	296	26	26	23	23	2.00
42892274--42892435	6	26.8	6	77	13	163	49	13	16	20	1.79
42892253--42892435	30	6.3	30	80	9	191	49	13	16	20	1.80
42892274--42892435	85	1.9	85	96	0	297	49	13	16	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42892553--42892618	27	2.5	26	85	7	87	37	22	22	16	1.93
42892553--42892626	27	2.8	27	78	13	82	36	21	24	17	1.95
42892577--42892634	27	2.1	27	84	6	73	36	27	20	15	1.93
42892791--42892849	22	2.7	22	81	0	64	32	22	25	20	1.98
42892937--42893019	27	3.1	26	86	5	112	34	22	22	19	1.96
42893218--42893386	27	6.3	27	86	0	203	25	18	19	36	1.95
42893234--42893386	81	1.9	81	87	0	225	25	17	20	36	1.94
42893391--42893777	27	14.3	27	81	4	422	40	10	21	27	1.86
42893396--42893755	54	6.7	54	86	3	467	40	10	21	27	1.85
42893379--42893831	81	5.6	81	80	6	438	38	11	21	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427