genome.fa.s11.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  151  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41475737--41475895	79	2.0	79	100	0	318	23	22	15	37	1.93
41485319--41485526	40	5.2	40	84	0	218	25	22	25	25	2.00
41485320--41485526	80	2.6	80	83	4	247	25	22	26	25	2.00
41493468--41493675	40	5.2	40	84	0	218	25	22	25	25	2.00
41493469--41493675	80	2.6	80	83	4	247	25	22	26	25	2.00
41498345--41498462	41	3.1	41	60	32	100	31	17	29	21	1.96
41498313--41498476	71	2.3	71	97	0	319	34	17	28	18	1.94
41501672--41501754	40	2.1	40	86	0	112	40	8	18	32	1.80
41505662--41505772	47	2.4	47	83	6	145	35	22	16	26	1.95
41514677--41514789	34	3.3	34	94	1	190	25	19	24	30	1.98
41520587--41520767	46	3.9	46	81	9	233	20	21	29	27	1.98
41520589--41520759	93	1.8	93	96	0	315	20	22	29	27	1.98
41523162--41523323	6	26.8	6	75	15	138	49	14	16	19	1.80
41523162--41523348	30	6.4	29	80	11	195	48	15	17	18	1.81
41523162--41523348	85	2.2	85	90	0	302	48	15	17	18	1.81
41523480--41523581	27	3.8	26	88	5	132	36	21	23	18	1.95
41523739--41523820	22	3.7	22	91	3	112	30	21	26	20	1.98
41524250--41524618	27	14.0	27	84	5	389	24	20	20	34	1.96
41524279--41524626	81	4.4	82	88	4	452	25	20	20	34	1.96
41524549--41524588	19	2.1	19	100	0	80	27	25	20	27	1.99
41524520--41524615	46	2.1	46	98	0	183	26	22	21	29	1.99
41524568--41524626	27	2.2	27	100	0	118	27	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41524305--41524671	135	2.8	127	82	6	335	26	19	20	34	1.96
41524817--41524989	27	6.4	27	87	2	249	37	7	26	28	1.83
41524817--41524989	81	2.1	81	92	2	285	37	7	26	28	1.83
41524611--41525013	27	15.1	26	78	7	190	32	8	23	35	1.85
41524817--41525034	81	2.7	81	85	1	222	36	7	24	31	1.83
41526884--41526941	24	2.3	24	94	5	98	20	3	46	29	1.67
41529602--41529817	50	4.3	50	80	4	247	30	10	19	39	1.86
41529602--41529817	100	2.2	100	83	4	274	30	10	19	39	1.86
41532891--41533074	67	2.9	63	78	7	199	29	16	29	23	1.96
41534156--41534184	2	14.5	2	100	0	58	48	0	0	51	1.00
41541855--41541914	30	2.0	30	90	0	93	30	25	8	36	1.85
41544032--41544095	31	2.1	31	93	0	110	21	21	17	39	1.93
41544287--41544381	24	4.0	24	85	10	124	26	24	21	28	1.99
41544287--41544380	47	2.0	49	85	12	133	26	24	21	27	1.99
41544432--41544491	20	3.0	20	90	0	102	31	20	11	36	1.88
41551970--41552033	31	2.1	31	93	0	110	21	21	17	39	1.93
41552225--41552319	24	4.0	24	85	10	124	26	24	21	28	1.99
41552225--41552318	47	2.0	49	85	12	133	26	24	21	27	1.99
41552370--41552429	20	3.0	20	90	0	102	31	20	11	36	1.88
41558922--41558982	27	2.3	26	85	2	77	21	22	19	36	1.95
41562800--41562922	47	2.6	47	96	0	228	30	29	19	21	1.97
41563391--41563450	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41576621--41576791	93	1.8	93	94	0	306	28	29	21	21	1.98
41576616--41576788	46	3.7	46	79	13	210	29	28	20	21	1.98
41590507--41590722	50	4.3	51	76	9	203	30	10	19	39	1.85
41590511--41590722	100	2.1	100	81	3	239	30	10	19	39	1.85
41591723--41591756	17	2.0	17	88	0	50	29	0	14	55	1.40
41592652--41592699	22	2.2	22	100	0	96	27	20	0	52	1.47
41596173--41596239	25	2.7	24	79	4	71	37	14	26	20	1.92
41598378--41598514	48	2.8	48	78	12	147	21	17	24	36	1.94
41598377--41598552	48	3.7	48	78	8	146	23	17	25	34	1.96
41598752--41598789	20	1.9	20	88	0	58	34	2	10	52	1.50
41599309--41599333	13	1.9	13	100	0	50	0	32	0	68	0.90
41600419--41600487	28	2.5	28	90	2	113	43	26	10	20	1.83
41605248--41605292	22	2.1	22	84	8	58	33	15	8	42	1.78
41605355--41605401	22	2.2	20	85	7	58	36	6	2	55	1.37
41610388--41610417	16	1.9	15	93	6	51	53	23	20	3	1.60
41610820--41610924	27	3.9	27	85	7	133	16	24	21	37	1.93
41610820--41610931	54	2.1	54	86	3	154	16	24	22	37	1.93
41615469--41615493	5	5.0	5	100	0	50	40	0	0	60	0.97
41623396--41623455	27	2.2	28	81	3	68	26	11	20	41	1.86
41623408--41623476	28	2.5	28	95	2	122	18	10	26	44	1.81
41627317--41627347	2	15.5	2	100	0	62	51	0	0	48	1.00
41629349--41629409	30	2.0	30	83	0	77	31	22	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41630274--41630302	13	2.2	13	100	0	58	31	0	13	55	1.39
41638061--41638439	48	7.8	48	86	3	533	29	25	19	25	1.98
41638061--41638439	150	2.6	144	88	3	535	29	25	19	25	1.98
41642650--41642727	33	2.4	33	82	0	93	26	28	21	23	1.99
41642933--41642997	27	2.5	26	82	2	85	35	21	23	20	1.96
41643150--41643266	27	4.3	27	83	2	128	25	17	17	38	1.92
41643177--41643281	54	1.9	54	82	3	131	27	15	19	38	1.91
41643248--41643379	27	4.9	27	82	0	165	34	12	16	36	1.86
41645814--41646008	80	2.4	80	81	3	205	24	22	28	24	2.00
41645816--41646044	40	5.7	39	77	5	163	24	23	28	24	2.00
41645860--41646044	80	2.3	80	80	1	192	22	23	30	23	1.99
41650851--41651013	39	4.2	39	93	0	263	23	20	31	24	1.98
41650851--41651043	39	4.9	39	90	0	251	23	21	31	23	1.98
41656390--41656540	40	3.8	39	84	2	151	23	27	22	26	2.00
41656390--41656540	80	1.9	79	83	6	198	23	27	22	26	2.00
41657359--41657404	17	2.5	19	74	22	53	34	23	17	23	1.96
41664382--41664532	40	3.8	39	84	2	151	23	27	22	26	2.00
41664382--41664532	80	1.9	79	83	6	198	23	27	22	26	2.00
41665352--41665397	17	2.5	19	74	22	53	34	23	17	23	1.96
41667873--41667955	25	3.4	25	65	24	68	55	13	4	26	1.58
41667867--41667963	48	2.0	48	100	0	194	52	14	6	26	1.65
41668192--41668432	46	5.2	46	75	13	176	26	28	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41668264--41668432	94	1.8	92	85	10	236	27	28	17	26	1.98
41668771--41668828	30	1.9	30	89	0	89	29	25	10	34	1.89
41677003--41677120	46	2.6	46	89	2	175	29	27	20	22	1.98
41678588--41678864	47	5.9	47	81	7	237	25	31	16	26	1.97
41679156--41679235	40	2.0	40	100	0	160	47	17	5	30	1.69
41682015--41682040	11	2.4	11	100	0	52	19	0	0	80	0.71
41682959--41683006	22	2.3	20	77	16	53	14	12	12	60	1.59
41687475--41687506	3	10.7	3	93	0	55	68	3	0	28	1.04
41687759--41687821	33	1.9	32	83	3	81	30	6	7	55	1.54
41690151--41690229	26	3.1	26	87	7	108	17	25	20	36	1.94
41690705--41690761	25	2.3	25	79	11	64	45	14	15	24	1.83
41693461--41693485	12	2.1	12	100	0	50	72	0	0	28	0.86
41695325--41695360	16	2.2	16	90	0	54	72	5	22	0	1.05
41696516--41696687	46	3.7	46	75	12	161	20	19	28	30	1.97
41696507--41696680	93	1.9	94	87	2	260	22	20	27	29	1.99
41702170--41702216	22	2.1	22	84	0	58	53	8	17	21	1.70
41704554--41704605	26	2.1	25	82	10	63	65	5	3	25	1.32
41705323--41705348	12	2.2	12	100	0	52	61	0	0	38	0.96
41715206--41715253	5	9.2	5	80	13	53	70	2	0	27	0.98
41722349--41722394	23	2.0	23	91	4	76	41	8	2	47	1.46
41726443--41726508	33	2.0	32	85	2	87	16	21	24	37	1.93
41740789--41740840	25	2.1	25	88	0	77	40	15	7	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41756028--41756060	16	2.1	16	94	5	59	39	36	12	12	1.80
41757713--41757879	40	4.2	40	78	6	160	25	22	27	24	2.00
41764422--41764530	56	2.0	53	82	12	132	36	18	16	28	1.92
41765725--41765891	40	4.2	40	78	6	160	25	22	27	24	2.00
41771793--41772160	46	7.8	47	74	13	264	24	30	18	26	1.98
41771793--41772157	94	3.9	94	74	12	270	24	30	18	27	1.98
41779542--41779862	47	6.9	47	74	13	191	26	28	18	26	1.98
41779740--41779910	46	3.7	46	80	7	186	23	28	19	28	1.98
41779656--41779910	46	5.5	43	76	14	165	24	29	18	27	1.98
41781579--41781669	27	3.4	26	79	10	85	38	18	23	19	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427