genome.fa.s11.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  202  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56480715--56480774	25	2.4	25	77	2	66	40	13	23	23	1.90
56494466--56494618	39	3.9	39	88	0	216	23	30	21	24	1.99
56494435--56494617	78	2.3	79	89	1	269	22	29	22	24	1.99
56500845--56500914	27	2.5	28	88	2	106	31	25	14	28	1.95
56508766--56508835	27	2.5	28	88	2	106	31	25	14	28	1.95
56513551--56513693	39	3.7	39	90	2	234	22	30	20	26	1.99
56513511--56513692	77	2.3	79	89	2	269	23	29	22	24	1.99
56517579--56517618	21	2.0	21	85	5	55	25	25	35	15	1.94
56518723--56518939	46	4.7	46	73	13	151	24	28	19	27	1.99
56528001--56528085	41	2.1	41	97	0	161	42	21	10	25	1.85
56528573--56528622	23	2.2	23	85	7	66	38	32	2	28	1.68
56529742--56529849	43	2.5	43	74	8	112	33	24	12	30	1.91
56531547--56531681	67	2.0	67	97	0	252	37	20	7	35	1.80
56546370--56546499	40	3.2	40	79	2	154	23	23	28	23	2.00
56550301--56550348	24	2.0	24	100	0	96	29	16	16	37	1.91
56554128--56554256	40	3.2	40	81	6	145	24	21	27	26	1.99
56557202--56557235	17	1.9	18	88	5	52	35	11	2	50	1.54
56557585--56557960	201	1.9	201	89	0	590	32	23	20	22	1.98
56558086--56558128	22	2.0	22	90	0	59	37	27	20	13	1.91
56559053--56559221	94	1.8	90	89	5	266	23	25	14	36	1.93
56561444--56561499	27	2.1	27	96	0	103	30	19	28	21	1.98
56561931--56561986	27	2.1	26	83	3	67	28	16	21	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56564623--56564688	25	2.7	25	76	2	62	33	18	22	25	1.97
56570111--56570207	34	2.8	33	75	17	92	29	21	23	24	1.99
56572945--56573106	39	4.2	39	91	1	236	22	20	32	24	1.98
56572962--56573136	78	2.2	78	85	3	226	22	22	32	22	1.98
56578328--56578506	24	7.4	24	92	1	295	27	20	20	30	1.98
56578328--56578506	73	2.5	73	93	1	297	27	20	20	30	1.98
56578556--56578622	20	3.3	20	93	0	116	32	20	11	34	1.90
56578556--56578611	11	5.5	11	71	16	57	32	19	12	35	1.89
56585077--56585108	6	5.3	6	92	0	55	50	15	0	34	1.45
56593510--56593734	40	5.6	40	86	3	283	27	27	21	23	1.99
56593510--56593734	81	2.8	81	85	2	285	27	27	21	23	1.99
56611437--56611487	18	2.8	18	84	0	75	47	11	17	23	1.81
56611817--56611981	27	6.1	27	87	0	215	41	20	13	24	1.89
56614157--56614429	48	5.7	48	72	10	209	28	20	22	28	1.98
56615612--56615712	31	3.3	31	95	0	175	17	33	32	15	1.92
56620109--56620460	49	7.2	49	97	0	632	30	8	29	30	1.87
56620138--56620220	27	3.3	27	60	16	68	31	4	30	33	1.79
56620529--56620615	37	2.3	36	92	5	138	21	19	32	26	1.97
56622179--56622314	48	2.8	48	83	2	148	28	21	21	28	1.98
56624085--56624184	29	3.4	29	82	5	112	40	13	29	18	1.87
56625669--56625747	25	3.3	25	66	10	74	29	5	27	37	1.78
56625672--56625766	47	2.0	47	95	0	172	29	6	25	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56636171--56636377	40	5.2	39	79	8	195	26	22	26	25	2.00
56636171--56636377	80	2.6	80	82	2	238	26	22	26	25	2.00
56640670--56640808	44	3.2	42	73	14	106	35	21	15	26	1.94
56642985--56643054	27	2.5	28	88	2	106	28	14	25	31	1.95
56642985--56643066	27	3.0	27	80	8	103	29	13	23	34	1.93
56650904--56650973	27	2.5	28	88	2	106	28	14	25	31	1.95
56650904--56650985	27	3.0	27	80	8	103	29	13	23	34	1.93
56652489--56652596	26	4.2	26	93	0	189	32	7	24	36	1.83
56654218--56654358	27	5.2	26	81	6	156	18	22	23	35	1.96
56654218--56654334	54	2.2	54	95	0	207	17	22	24	35	1.95
56654218--56654358	54	2.6	54	89	2	194	18	22	23	35	1.96
56661325--56661454	43	3.1	43	88	2	192	30	32	23	13	1.93
56670285--56670405	49	2.5	49	98	0	233	31	9	28	30	1.88
56670381--56670558	48	3.7	48	90	1	275	34	7	26	32	1.84
56670598--56670725	37	3.4	37	92	1	211	23	17	32	25	1.97
56677218--56677371	42	3.6	42	78	8	161	32	15	21	30	1.94
56679695--56679799	40	2.6	40	87	0	138	22	15	26	35	1.94
56679791--56679860	24	2.8	24	78	8	68	25	11	32	30	1.91
56679786--56679876	28	3.4	28	73	13	84	25	13	30	30	1.93
56685708--56686059	49	7.4	49	85	10	498	28	9	32	29	1.88
56685912--56685990	38	2.1	39	90	7	126	27	10	34	27	1.89
56685762--56686038	101	3.0	89	83	14	382	28	8	32	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56686161--56686245	37	2.3	37	95	0	152	24	20	34	21	1.97
56694538--56694705	40	4.2	40	82	1	185	24	26	22	26	2.00
56697865--56697898	11	3.1	11	86	0	50	50	8	11	29	1.69
56698136--56698184	24	2.0	25	88	8	73	63	12	10	14	1.53
56700192--56700809	176	3.5	176	85	2	805	28	24	16	30	1.96
56700192--56700843	351	1.9	351	83	2	871	28	24	16	30	1.96
56701197--56701324	64	2.0	64	95	0	229	38	14	17	30	1.89
56702388--56702442	29	1.9	28	89	10	85	10	7	5	76	1.15
56702964--56703026	29	2.2	29	85	2	83	4	14	9	71	1.28
56707226--56707444	40	5.5	39	85	3	242	25	26	22	25	2.00
56707239--56707446	80	2.6	80	85	0	272	25	26	22	25	2.00
56713163--56713290	40	3.2	40	82	4	143	28	21	25	25	1.99
56718026--56718167	40	3.5	40	82	3	117	28	22	26	23	1.99
56718065--56718193	40	3.2	39	84	6	152	24	22	27	25	2.00
56720788--56720902	43	2.7	42	79	11	135	27	23	16	32	1.96
56724598--56724690	25	3.7	25	82	0	114	27	24	21	25	1.99
56732651--56732696	24	1.9	24	100	0	92	32	17	26	23	1.97
56732607--56732741	67	2.0	67	86	2	191	26	14	26	31	1.95
56733775--56733841	30	2.2	30	83	0	89	17	23	29	28	1.97
56739298--56739324	14	1.9	14	100	0	54	33	7	14	44	1.73
56740471--56740591	46	2.6	46	84	7	147	28	21	28	22	1.99
56740614--56740741	49	2.6	48	80	7	132	29	18	26	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56743107--56743202	40	2.4	40	83	0	120	40	17	15	26	1.89
56744337--56744389	24	2.3	22	78	12	52	45	28	5	20	1.74
56745880--56746067	47	3.9	47	89	6	272	27	29	9	34	1.87
56749066--56749184	44	2.7	44	79	11	127	36	31	12	19	1.89
56749974--56750263	50	5.8	50	78	3	269	30	25	17	25	1.98
56750035--56750216	101	1.8	101	90	2	294	28	24	19	27	1.98
56753329--56753403	29	2.6	29	82	6	89	29	32	13	25	1.93
56756322--56756365	21	2.1	21	100	0	88	47	29	4	18	1.68
56757777--56757861	23	3.7	23	64	16	59	36	16	23	23	1.94
56762058--56762150	44	2.1	44	95	0	168	54	11	3	30	1.52
56768050--56768074	2	12.5	2	100	0	50	52	0	0	48	1.00
56770252--56770279	2	14.0	2	100	0	56	50	0	0	50	1.00
56771658--56771865	79	2.6	80	77	6	190	24	30	23	22	1.99
56771719--56771865	40	3.7	40	80	1	134	23	30	23	21	1.99
56782876--56783026	40	3.8	40	79	6	155	25	22	27	23	2.00
56807784--56807853	27	2.6	27	93	2	113	30	28	14	27	1.95
56814201--56814398	71	2.8	70	92	3	294	33	17	28	20	1.95
56814267--56814384	41	3.1	41	60	28	98	32	17	28	21	1.96
56814235--56814398	71	2.3	71	100	0	328	35	17	28	18	1.94
56818472--56818540	27	2.5	27	92	2	111	30	27	14	27	1.95
56834031--56834296	47	5.7	47	74	11	210	23	29	18	28	1.97
56834032--56834293	46	5.6	46	77	8	230	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56834119--56834294	94	1.9	92	86	6	248	22	29	20	27	1.98
56834032--56834293	140	1.9	140	84	3	357	23	29	18	28	1.98
56837512--56837590	25	3.3	24	66	16	65	32	5	30	31	1.79
56837388--56837640	47	5.3	47	90	3	364	31	7	31	29	1.86
56837388--56837640	95	2.7	95	87	6	368	31	7	31	29	1.86
56839766--56839997	40	5.8	40	91	0	347	26	21	27	25	1.99
56845283--56845397	55	2.1	56	82	11	139	34	21	25	18	1.96
56845308--56845397	28	3.2	27	85	7	119	32	23	25	18	1.97
56845503--56845567	28	2.3	28	92	5	105	29	7	29	33	1.85
56848662--56848769	40	2.7	38	85	8	128	21	29	25	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427