Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  372  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108039818--108039847
15
1.9
16
93
6
53
70
3
0
26
1.03
108039812--108039861
25
2.0
26
92
4
84
64
4
0
32
1.12
108039726--108039994
9
28.8
9
66
21
101
60
4
1
33
1.25
108049766--108049830
31
2.0
33
85
8
89
35
16
15
32
1.91
108064925--108064949
9
2.8
9
100
0
50
44
24
0
32
1.54
108067393--108067440
13
3.4
13
74
20
51
45
6
4
43
1.48
108067382--108067440
30
2.0
30
100
0
118
44
5
6
44
1.52
108067382--108067430
17
3.1
17
72
22
61
42
6
8
42
1.59
108067458--108067504
16
2.7
18
87
9
62
63
0
0
36
0.94
108070934--108071065
71
1.9
71
91
0
219
38
17
14
29
1.89
108072011--108072049
21
1.9
20
89
5
60
17
0
12
69
1.19
108077807--108077849
22
2.0
22
90
0
68
37
13
16
32
1.88
108079489--108079555
32
2.1
32
94
0
116
34
19
10
35
1.86
108079614--108079652
20
2.0
19
85
5
51
38
5
0
56
1.22
108085559--108085623
30
2.2
30
81
10
73
41
3
6
49
1.43
108087575--108087620
21
2.1
21
84
4
56
36
15
15
32
1.88
108092015--108092039
3
8.3
3
100
0
50
32
36
0
32
1.58
108107969--108108009
18
2.2
19
83
12
50
26
2
46
24
1.65
108122102--108122165
31
2.0
32
82
8
78
48
3
0
48
1.17
108122272--108122305
17
2.0
17
88
11
52
55
0
0
44
0.99
108127895--108127919
11
2.3
11
100
0
50
72
0
0
28
0.86
108127895--108127933
19
2.0
20
90
5
62
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108128182--108128225
24
1.9
22
86
9
61
29
22
2
45
1.65
108128190--108128248
31
1.9
30
83
10
75
28
22
1
47
1.61
108145041--108145081
21
2.0
21
90
0
64
19
29
21
29
1.98
108149737--108149769
2
16.5
2
100
0
66
48
0
0
51
1.00
108176006--108176038
11
2.8
12
81
9
50
0
21
0
78
0.75
108177131--108177166
15
2.3
17
81
18
51
0
30
0
69
0.89
108183727--108183759
11
2.9
11
95
4
57
45
0
0
54
0.99
108185216--108185249
2
17.5
2
87
6
52
47
0
0
52
1.00
108192284--108192336
23
2.2
26
83
10
67
47
3
3
45
1.39
108195427--108195455
3
9.7
3
100
0
58
0
0
31
68
0.89
108196886--108196930
23
2.0
23
82
8
56
28
4
11
55
1.54
108199592--108199631
21
2.0
20
85
5
53
65
0
0
35
0.93
108204189--108204259
29
2.4
29
83
4
88
32
7
14
46
1.71
108204189--108204280
30
3.1
29
82
4
94
29
7
14
48
1.71
108205248--108205281
18
1.9
17
88
5
50
58
20
0
20
1.39
108210693--108210718
6
4.3
6
100
0
52
46
15
38
0
1.46
108218479--108218536
3
20.0
3
74
13
50
34
0
5
60
1.19
108218483--108218561
33
2.4
33
89
2
113
34
1
7
56
1.35
108218773--108218830
23
2.6
21
79
15
62
46
6
10
36
1.65
108219015--108219058
22
2.1
20
84
16
54
72
2
15
9
1.19
108219968--108220055
21
4.0
23
78
10
94
14
20
23
40
1.90
108237594--108237635
20
2.0
21
86
4
59
57
2
0
40
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108238337--108238371
12
3.0
12
87
8
54
28
2
0
68
1.04
108238915--108238989
38
2.0
38
100
0
150
60
24
5
10
1.51
108246864--108246892
2
14.5
2
100
0
58
48
0
0
51
1.00
108260985--108261022
2
19.0
2
100
0
76
50
0
0
50
1.00
108265362--108265477
51
2.3
51
80
0
133
41
12
6
39
1.68
108268166--108268281
51
2.3
51
80
0
133
41
12
6
39
1.68
108278473--108278517
22
2.0
22
100
0
90
31
13
4
51
1.61
108278633--108278675
21
2.0
21
86
0
59
51
2
2
44
1.27
108278854--108278879
4
6.5
4
100
0
52
76
0
23
0
0.78
108285550--108285867
158
2.0
158
90
0
501
30
18
18
32
1.95
108287134--108287173
21
1.9
21
84
0
53
45
0
0
55
0.99
108287130--108287197
33
2.1
33
83
5
84
39
0
1
58
1.07
108287706--108287829
60
2.3
52
73
23
130
28
9
17
44
1.80
108287721--108287841
60
2.0
59
96
1
224
28
8
18
44
1.78
108288506--108288610
44
2.5
42
78
9
115
34
9
0
56
1.32
108290832--108290859
2
14.0
2
100
0
56
50
0
0
50
1.00
108296293--108296470
45
4.0
45
81
2
207
42
12
21
22
1.87
108296293--108296462
90
1.9
89
87
3
252
42
12
22
22
1.86
108312541--108313076
44
12.2
44
90
0
820
26
30
14
28
1.95
108313894--108313919
11
2.4
11
100
0
52
7
0
0
92
0.39
108322121--108322180
30
2.0
30
93
0
102
56
5
5
33
1.42
108328298--108328434
55
2.5
55
80
2
150
27
27
24
20
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108330921--108330982
28
2.2
28
97
2
117
16
6
12
64
1.47
108330921--108330989
28
2.5
28
92
2
104
15
7
11
65
1.46
108361392--108361559
82
2.0
82
96
0
309
32
19
18
29
1.96
108366419--108366458
20
2.0
20
100
0
80
35
20
30
15
1.93
108369266--108369325
29
2.1
29
87
6
86
40
6
8
45
1.61
108381859--108381883
13
1.9
13
100
0
50
48
4
0
48
1.20
108386709--108386739
3
10.3
3
100
0
62
67
0
0
32
0.91
108395213--108395280
31
2.2
32
97
2
129
38
14
23
23
1.92
108395575--108395605
15
2.1
15
100
0
62
38
22
12
25
1.90
108398677--108398735
28
2.1
28
81
9
66
30
3
1
64
1.20
108400885--108400909
5
5.0
5
100
0
50
20
0
0
80
0.72
108403249--108403983
380
1.9
380
98
0
1434
28
12
23
34
1.92
108415049--108415150
50
2.0
50
96
0
186
28
10
10
50
1.71
108416416--108416705
143
2.0
143
95
0
526
26
33
5
35
1.79
108425159--108425257
40
2.5
40
79
14
105
38
17
9
35
1.81
108425169--108425258
20
4.5
19
75
8
65
37
17
8
35
1.81
108425196--108425259
20
3.2
20
80
8
69
37
20
9
32
1.85
108425228--108425266
20
2.0
20
84
0
51
35
17
7
38
1.79
108425439--108425504
22
3.0
22
81
2
69
36
19
18
25
1.94
108427640--108427691
6
9.0
6
79
8
63
82
1
15
0
0.75
108427640--108427691
23
2.3
23
82
0
68
82
1
15
0
0.75
108427644--108427691
17
2.8
17
81
9
62
83
2
14
0
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108429142--108429202
25
2.4
25
86
2
77
14
19
22
42
1.88
108431602--108431649
24
2.1
23
88
7
71
50
2
0
47
1.12
108431691--108431748
19
3.1
19
82
9
73
53
1
3
41
1.28
108431694--108431731
20
1.9
19
94
5
67
52
0
2
44
1.14
108431699--108431792
38
2.5
36
80
14
102
53
2
2
42
1.25
108435477--108435626
42
3.5
42
81
3
185
32
14
24
29
1.95
108439632--108439676
23
2.0
23
82
8
56
37
8
13
40
1.76
108447392--108447436
23
2.0
23
82
8
56
37
8
13
40
1.76
108449941--108449976
12
2.9
13
88
12
58
55
0
0
44
0.99
108450210--108450277
30
2.3
30
84
5
84
29
19
5
45
1.73
108452508--108452534
9
3.0
9
100
0
54
66
0
0
33
0.92
108452792--108452820
14
2.0
15
93
6
51
41
0
0
58
0.98
108453168--108453197
15
2.0
15
100
0
60
40
6
6
46
1.56
108454003--108454042
18
2.2
19
86
8
57
37
5
0
57
1.21
108455030--108455082
18
2.9
17
73
13
52
56
1
0
41
1.10
108455694--108455737
22
2.0
22
86
8
63
40
0
2
56
1.11
108456919--108456960
20
2.1
20
100
0
84
59
4
0
35
1.19
108470057--108470124
33
2.0
34
83
8
86
54
1
2
41
1.24
108471718--108471750
13
2.4
14
90
5
50
30
9
9
51
1.64
108472983--108473038
20
2.7
20
86
10
69
30
1
3
64
1.21
108474077--108474121
18
2.5
18
81
0
54
26
8
2
62
1.37
108474252--108474281
13
2.3
13
94
0
51
40
10
6
43
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108477618--108477654
13
2.8
14
84
12
51
27
0
0
72
0.84
108479281--108479343
29
2.1
30
91
2
101
30
19
9
41
1.83
108480897--108480930
12
2.9
12
86
4
52
32
0
0
67
0.91
108481051--108481115
30
2.2
30
91
5
105
60
9
3
27
1.43
108481145--108481187
22
2.0
22
85
0
59
58
9
11
20
1.61
108481152--108481191
11
3.6
11
79
0
53
57
7
12
22
1.60
108482185--108482226
16
2.6
16
75
14
50
33
0
2
64
1.07
108482779--108482804
11
2.4
11
100
0
52
69
15
7
7
1.35
108483605--108483674
30
2.3
30
82
4
88
31
22
10
35
1.87
108486081--108486223
42
3.4
41
68
18
105
26
23
30
20
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427