genome.fa.s11.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  122  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32272088--32272130	10	4.4	10	79	5	52	32	2	0	65	1.06
32272673--32272717	12	3.3	15	78	15	53	60	2	35	2	1.22
32273276--32273387	56	2.0	56	91	3	181	39	10	19	30	1.86
32273816--32273864	21	2.3	21	89	0	71	8	22	32	36	1.84
32274527--32274704	83	2.1	84	87	4	252	43	20	8	27	1.80
32274527--32274704	43	4.2	43	87	2	247	43	20	8	27	1.80
32274531--32274704	85	2.1	83	86	4	242	44	20	8	27	1.80
32276347--32276395	15	3.2	15	94	2	80	36	40	6	16	1.73
32276681--32276942	62	4.2	62	93	2	418	47	13	12	26	1.78
32276874--32276986	48	2.4	48	90	0	172	48	15	11	23	1.78
32276924--32277050	64	2.0	64	93	0	218	48	14	14	22	1.81
32276812--32277052	112	2.2	110	87	1	329	47	15	13	24	1.81
32276868--32277087	112	2.0	112	85	5	302	49	15	11	23	1.78
32277189--32277228	12	3.3	12	86	6	55	52	17	5	25	1.64
32277863--32277935	31	2.4	30	86	8	103	21	9	20	47	1.78
32284219--32284249	16	1.9	16	93	0	53	35	22	0	41	1.54
32284216--32284255	20	2.0	20	85	0	53	37	22	0	40	1.54
32284441--32284695	55	4.8	54	81	7	274	21	25	17	36	1.95
32284488--32284688	108	1.8	110	90	4	327	22	25	17	34	1.96
32287401--32287440	20	2.1	19	85	4	53	42	5	7	45	1.54
32292640--32292665	13	2.0	13	100	0	52	30	0	15	53	1.42
32306532--32306593	3	20.7	3	100	0	124	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32308747--32308945	100	2.0	97	94	2	344	38	13	10	37	1.79
32313283--32313544	26	10.1	26	84	1	276	20	15	28	35	1.93
32315240--32315277	18	2.1	18	100	0	76	39	10	23	26	1.87
32327137--32327523	84	4.7	84	85	7	463	45	11	10	32	1.75
32327365--32327389	5	5.0	5	100	0	50	60	20	0	20	1.37
32327137--32327463	159	2.1	159	87	2	469	45	11	10	31	1.75
32327048--32327518	243	1.9	242	84	5	619	45	11	11	31	1.76
32327609--32327856	89	2.8	87	85	4	302	43	12	12	30	1.80
32327799--32327929	67	2.0	67	83	3	165	48	9	12	29	1.74
32328019--32328048	13	2.3	13	94	0	51	50	3	0	46	1.18
32337354--32337529	46	3.8	46	78	4	201	22	21	27	28	1.99
32337351--32337521	93	1.8	93	92	0	288	22	22	28	27	1.99
32343120--32343191	32	2.2	33	80	12	76	48	38	4	8	1.53
32343851--32343999	42	3.6	41	81	10	158	28	24	16	30	1.96
32351400--32351430	15	2.1	15	93	0	53	70	0	0	29	0.87
32364558--32364665	26	4.2	26	93	0	189	36	24	7	32	1.83
32372777--32372900	46	2.7	44	85	7	142	29	17	27	25	1.98
32373113--32373142	14	2.1	14	100	0	60	20	6	30	43	1.77
32376361--32376822	47	9.7	47	88	5	635	32	7	30	29	1.85
32376361--32376822	96	4.8	95	89	5	648	32	7	30	29	1.85
32376361--32376822	145	3.2	145	94	1	792	32	7	30	29	1.85
32378746--32378947	40	5.0	40	84	1	224	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32378940--32379375	43	10.1	43	96	0	800	13	22	31	32	1.92
32383115--32383576	47	9.7	47	88	5	635	32	7	30	29	1.85
32383115--32383576	96	4.8	95	89	5	648	32	7	30	29	1.85
32383115--32383576	145	3.2	145	94	1	792	32	7	30	29	1.85
32385799--32385823	12	2.1	12	100	0	50	36	16	24	24	1.94
32391278--32391391	43	2.7	40	76	8	111	26	26	19	28	1.99
32393182--32393256	34	2.2	34	100	0	150	33	8	29	29	1.86
32394357--32394940	48	12.0	48	94	1	952	35	6	27	30	1.81
32394357--32394940	146	4.0	144	93	2	952	35	6	27	30	1.81
32395085--32395183	37	2.7	37	90	0	153	27	19	29	24	1.98
32400923--32401059	45	3.1	45	82	7	156	27	27	21	24	1.99
32401366--32401574	43	4.9	43	92	2	332	29	32	24	13	1.93
32405047--32405270	40	5.6	40	87	3	306	24	23	26	25	2.00
32405051--32405270	83	2.7	80	88	5	302	23	24	27	25	2.00
32413154--32413377	40	5.6	40	81	3	261	23	24	26	25	2.00
32413154--32413380	123	1.9	122	84	3	298	24	24	25	25	2.00
32414822--32414858	17	2.2	17	100	0	74	43	16	5	35	1.71
32414997--32415026	15	1.9	16	93	6	53	56	0	0	43	0.99
32414987--32415029	22	2.0	21	86	13	61	53	2	0	44	1.13
32426456--32426500	24	1.9	23	86	4	63	75	2	8	13	1.13
32434850--32434903	26	2.1	26	100	0	108	46	11	11	31	1.74
32445794--32445821	2	14.0	2	100	0	56	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32453107--32453149	21	2.0	21	100	0	86	46	13	25	13	1.81
32453649--32453764	23	5.0	23	77	9	110	18	4	36	41	1.70
32453649--32453765	46	2.5	47	83	5	139	17	5	35	41	1.72
32458497--32458557	30	2.0	30	83	0	77	31	22	8	37	1.84
32462226--32462294	28	2.5	28	95	2	122	18	10	27	43	1.82
32464121--32464164	19	2.4	18	85	7	54	40	9	0	50	1.34
32464724--32464764	21	2.0	21	85	0	55	21	17	41	19	1.90
32472214--32472397	40	4.7	40	83	9	218	23	22	27	26	2.00
32472215--32472397	78	2.3	81	84	9	243	24	22	27	26	2.00
32480350--32480407	29	2.0	29	100	0	116	20	17	34	27	1.95
32480319--32480447	69	1.9	69	86	3	188	24	19	30	26	1.98
32482752--32482789	20	1.9	20	88	0	58	44	15	2	36	1.61
32482832--32482869	20	1.9	20	88	0	58	42	7	5	44	1.56
32483295--32483346	22	2.4	22	80	3	70	50	0	1	48	1.12
32483439--32483511	35	2.1	35	89	0	110	43	4	2	49	1.36
32485497--32485544	23	2.1	23	96	0	87	50	0	18	31	1.48
32487999--32488214	107	2.0	107	93	1	371	36	18	15	29	1.92
32490703--32490775	20	3.7	19	75	14	67	35	13	17	32	1.89
32494001--32494178	52	3.5	50	90	4	259	27	15	29	27	1.96
32494001--32494178	51	3.5	51	90	4	263	27	15	29	27	1.96
32498426--32498465	18	2.2	18	95	0	71	27	35	0	37	1.57
32506026--32506097	29	2.4	29	81	2	81	47	19	4	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32506340--32506383	18	2.5	17	85	10	61	9	11	2	77	1.08
32506481--32506524	20	2.0	23	83	16	58	43	0	0	56	0.99
32506501--32506534	14	2.5	14	95	4	61	38	0	0	61	0.96
32506487--32506773	36	8.1	36	70	17	158	44	1	1	53	1.16
32506512--32506556	21	2.1	22	88	12	67	37	0	2	60	1.09
32506567--32506651	14	6.1	14	75	13	59	50	1	1	47	1.16
32506616--32506646	14	2.2	14	100	0	62	54	0	0	45	0.99
32506662--32506701	21	2.0	20	90	5	62	45	0	0	55	0.99
32506714--32506748	14	2.6	13	90	4	52	45	0	0	54	0.99
32506679--32506773	13	7.8	12	72	18	65	42	1	0	56	1.06
32506516--32506786	145	1.9	143	85	5	375	45	1	1	52	1.17
32506729--32506797	21	3.3	22	82	17	85	44	0	0	55	0.99
32506849--32506888	11	3.2	12	86	13	55	62	2	0	35	1.09
32507042--32507096	14	4.0	14	80	17	62	16	9	1	72	1.18
32507124--32507192	23	3.0	22	72	17	68	40	0	4	55	1.20
32507213--32507269	19	2.8	19	80	17	62	43	0	1	54	1.10
32507157--32507252	33	2.9	32	84	7	122	39	1	3	56	1.22
32507218--32507278	20	3.0	21	80	9	72	47	0	1	50	1.10
32507218--32507279	21	3.0	22	81	11	60	48	0	1	50	1.10
32507322--32507396	32	2.3	32	84	8	91	33	0	4	62	1.14
32507282--32507433	24	6.2	24	71	20	93	37	1	3	57	1.27
32507323--32507427	55	1.9	55	81	11	126	35	0	3	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32507461--32507502	22	1.9	22	90	9	68	40	0	0	59	0.97
32507461--32507503	10	4.1	10	85	8	59	39	0	0	60	0.97
32507470--32507553	29	2.8	30	77	15	86	45	0	1	53	1.08
32507653--32507722	17	4.0	17	71	10	61	41	4	2	51	1.36
32507842--32507882	20	2.0	20	85	0	55	53	0	0	46	1.00
32507781--32507931	71	2.1	71	91	2	241	41	3	3	50	1.37
32508003--32508078	40	1.9	40	94	0	134	55	1	6	36	1.34
32508005--32508069	20	3.2	20	68	8	51	52	1	7	38	1.40
32508014--32508076	20	3.2	20	68	8	56	57	1	6	34	1.34
32508509--32508562	20	2.7	19	75	16	56	35	3	0	61	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427