genome.fa.s11.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  117  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30913801--30913831	16	2.0	16	93	6	55	29	6	6	58	1.48
30916005--30916056	21	2.4	22	90	3	79	32	1	7	57	1.38
30916340--30916389	22	2.3	22	93	6	84	26	8	0	66	1.19
30916558--30916616	24	2.4	25	78	13	61	18	16	0	64	1.29
30928316--30928489	88	2.0	86	87	4	251	36	21	21	20	1.95
30928373--30928527	44	3.6	42	73	12	134	36	22	19	21	1.95
30928618--30929019	44	9.2	43	75	11	318	36	19	21	21	1.95
30928628--30928969	87	3.9	87	91	1	535	36	20	21	21	1.95
30928628--30928963	173	1.9	174	92	1	568	36	20	21	22	1.95
30930720--30930771	21	2.4	22	90	3	79	32	1	7	57	1.38
30931055--30931104	22	2.3	22	93	6	84	26	8	0	66	1.19
30931273--30931331	24	2.4	25	78	13	61	18	16	0	64	1.29
30932247--30932276	16	1.9	15	93	6	51	53	3	6	36	1.44
30933333--30933376	23	2.0	22	81	4	52	27	18	2	52	1.57
30935618--30935642	13	1.9	13	100	0	50	24	24	32	20	1.98
30938700--30938761	16	4.1	15	75	17	58	19	9	0	70	1.14
30941124--30941389	93	2.9	93	93	0	451	28	29	20	21	1.98
30941117--30941379	46	5.7	46	74	12	250	29	29	20	20	1.98
30944996--30945092	48	2.0	47	98	2	185	37	28	12	21	1.90
30948805--30948852	25	1.9	25	82	0	60	29	10	16	43	1.81
30953951--30953991	21	2.0	21	100	0	82	17	29	4	48	1.67
30955450--30955540	44	2.1	44	89	0	137	28	13	13	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30963337--30963388	24	2.1	24	85	3	68	15	0	13	71	1.15
30964279--30964337	2	29.5	2	96	0	109	49	0	0	50	1.00
30965058--30965112	11	5.6	10	77	16	53	61	1	1	34	1.17
30965045--30965115	28	2.4	30	81	9	83	61	2	1	33	1.19
30965267--30965302	7	5.1	7	100	0	72	27	30	41	0	1.56
30971383--30971461	35	2.3	35	93	0	131	36	2	8	51	1.47
30976940--30976996	26	2.2	26	87	6	80	31	14	12	42	1.82
30982866--30982896	16	1.9	16	93	0	53	12	12	25	48	1.77
30985460--30985645	40	4.7	40	85	5	216	24	19	27	29	1.98
30985461--30985645	80	2.3	81	83	5	243	24	19	27	28	1.98
30985460--30985678	80	2.8	80	79	8	234	25	19	26	28	1.99
30989671--30989831	43	3.7	43	91	2	243	32	19	15	31	1.93
30994559--30994726	40	4.2	40	80	2	178	25	26	21	26	1.99
31002657--31002819	40	4.1	39	83	1	173	25	29	21	23	1.99
31002657--31002819	80	2.0	80	83	2	202	25	29	21	23	1.99
31007059--31007208	43	3.5	42	89	5	223	32	18	16	32	1.93
31008099--31008133	13	2.7	13	95	0	61	42	37	11	8	1.72
31010432--31010598	40	4.2	40	79	2	158	23	27	22	26	2.00
31017510--31017561	5	10.6	5	88	12	81	40	0	0	59	0.97
31017510--31017558	26	2.0	26	92	8	84	40	0	0	59	0.98
31017517--31017568	10	5.0	11	88	11	67	40	0	0	59	0.97
31018731--31018765	18	1.9	18	88	0	52	22	25	11	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31019364--31019472	26	4.2	26	93	0	191	33	5	26	34	1.80
31021067--31021207	27	5.2	26	77	11	142	17	23	24	35	1.95
31021064--31021207	54	2.7	54	90	2	227	16	23	24	35	1.95
31026847--31026909	27	2.3	27	80	0	72	36	26	6	30	1.81
31026860--31027017	54	2.9	54	82	0	172	31	23	6	37	1.81
31026860--31026990	27	4.9	27	87	0	172	29	23	6	39	1.81
31026968--31027296	53	6.1	54	74	9	213	39	20	8	31	1.83
31026847--31027031	81	2.3	81	76	0	199	34	23	7	35	1.82
31026982--31027160	80	2.2	81	86	3	236	40	21	9	28	1.84
31026970--31027213	107	2.3	107	79	2	265	40	22	7	29	1.82
31026982--31027214	80	2.9	80	80	8	215	41	21	7	29	1.80
31027221--31027275	26	2.1	26	83	12	69	40	12	10	36	1.79
31026968--31027298	27	12.3	27	78	5	231	39	20	8	31	1.83
31027329--31027419	27	3.4	27	90	1	139	36	19	25	18	1.95
31028126--31028212	20	4.3	20	92	2	140	40	10	18	31	1.84
31028262--31028397	52	2.7	51	94	5	233	27	22	23	26	1.99
31028262--31028397	26	5.3	26	89	3	199	27	22	23	26	1.99
31028530--31028624	42	2.3	42	83	0	127	31	15	18	33	1.93
31028645--31028754	31	3.5	31	94	0	193	30	17	25	27	1.97
31032269--31032379	45	2.5	45	85	2	134	43	19	17	19	1.88
31032774--31032843	22	3.2	22	73	15	81	51	12	1	34	1.49
31032758--31032846	44	2.0	44	97	0	169	47	16	2	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033496--31033766	5	54.2	5	98	0	524	59	0	0	40	1.04
31038258--31038406	40	3.7	40	88	3	219	25	23	27	23	2.00
31038258--31038439	80	2.3	80	83	4	217	26	23	26	23	2.00
31043249--31043339	37	2.5	37	94	0	155	25	32	18	23	1.97
31043480--31044299	48	17.0	48	95	3	1407	30	29	6	33	1.83
31043480--31044299	238	3.4	239	95	3	1423	30	29	6	33	1.83
31047156--31047266	45	2.5	45	88	2	161	41	17	18	22	1.90
31047244--31047268	12	2.1	12	100	0	50	40	20	24	16	1.91
31048336--31048385	5	10.4	5	91	8	86	60	0	0	40	0.97
31048342--31048390	18	2.7	18	93	6	82	61	0	0	38	0.96
31048337--31048390	23	2.3	23	100	0	108	61	0	0	38	0.96
31052884--31053071	40	4.7	40	86	3	254	27	21	26	24	1.99
31052884--31053104	40	5.6	39	82	5	239	28	21	26	23	1.99
31055760--31055948	40	4.7	40	82	5	238	28	22	25	24	1.99
31055760--31055981	40	5.6	39	80	7	223	28	22	25	23	1.99
31055760--31055981	80	2.8	78	82	7	259	28	22	25	23	1.99
31060697--31060787	37	2.5	37	94	0	155	25	32	18	23	1.97
31060928--31061791	48	18.0	48	97	0	1494	30	29	6	33	1.83
31064628--31064675	6	7.8	6	83	2	60	45	16	18	18	1.85
31064655--31064765	45	2.5	45	90	0	177	41	18	18	21	1.90
31064743--31064767	12	2.1	12	100	0	50	40	20	24	16	1.91
31064976--31065056	40	2.0	40	82	0	99	39	16	8	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31070815--31070846	15	2.1	16	88	11	50	21	3	21	53	1.60
31080276--31080452	46	3.6	47	74	19	162	29	29	19	20	1.97
31084656--31084765	19	5.9	19	91	6	181	37	10	15	36	1.83
31084656--31084788	19	6.8	22	87	8	95	36	9	15	37	1.81
31087153--31087201	19	2.6	19	90	0	71	32	8	38	20	1.82
31093145--31093311	40	4.2	40	82	2	185	24	26	22	26	2.00
31101592--31101717	40	3.2	39	80	6	139	21	25	24	28	1.99
31101531--31101717	80	2.3	80	78	12	204	22	27	24	25	2.00
31105795--31105852	22	2.7	21	76	10	53	43	17	3	36	1.66
31105831--31105919	19	4.8	19	90	8	148	37	15	10	37	1.82
31105843--31105913	35	2.0	36	97	2	135	36	14	11	38	1.81
31106273--31106450	45	4.0	45	86	1	241	26	30	13	29	1.94
31106464--31106758	78	3.8	78	85	5	409	24	22	20	33	1.97
31106464--31106758	156	1.9	156	88	4	452	24	22	20	33	1.97
31106839--31107201	78	4.7	77	89	2	548	24	25	19	31	1.98
31106348--31107488	365	3.1	364	84	5	1317	25	24	18	31	1.97
31106380--31107644	443	2.8	442	90	3	1948	25	24	18	32	1.97
31107283--31107720	78	5.6	78	92	0	700	25	24	18	32	1.97
31110033--31110107	37	2.0	37	97	0	141	26	40	12	21	1.88
31119598--31119863	93	2.9	93	90	0	415	28	29	19	22	1.98
31119645--31119807	47	3.5	46	71	14	154	30	30	18	21	1.97
31119591--31119853	46	5.7	46	72	15	218	28	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31121523--31121561	20	2.0	19	85	5	51	25	33	12	28	1.93
31125895--31125934	14	2.9	14	88	0	53	32	27	10	30	1.89
31130046--31130265	44	5.0	45	78	7	213	24	16	25	32	1.96
31138481--31138591	40	2.8	41	83	6	131	22	24	29	23	1.99
31144509--31144619	44	2.6	43	80	7	116	24	15	26	34	1.95
31146350--31146479	40	3.3	39	76	8	136	23	27	23	24	2.00
31146366--31146517	40	3.8	40	78	6	148	22	26	23	27	1.99
31146366--31146515	80	1.9	80	83	8	198	22	26	24	27	1.99
31150096--31150271	46	3.8	46	81	10	232	20	21	29	28	1.98
31150092--31150263	93	1.8	93	96	0	317	20	22	30	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427