genome.fa.s11.2.7.7.80.10.50.1000.362.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  362  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105099222--105099539	101	3.0	109	88	7	517	36	7	16	40	1.76
105099903--105099972	28	2.5	28	90	4	106	27	12	27	32	1.93
105103696--105104014	101	3.0	109	88	7	501	35	7	16	40	1.76
105104378--105104446	28	2.5	28	90	4	104	27	13	26	33	1.93
105116419--105116456	5	7.8	5	97	2	69	42	0	0	57	0.98
105117356--105117467	37	2.8	40	81	9	149	26	15	25	32	1.95
105117602--105117641	19	2.1	19	86	9	55	37	0	30	32	1.58
105117832--105117866	17	2.1	17	94	0	61	31	14	11	42	1.81
105118595--105118640	22	2.2	21	82	17	60	28	0	26	45	1.54
105119863--105119906	22	1.9	24	86	9	65	38	13	2	45	1.56
105130539--105130586	25	1.9	25	86	0	69	33	25	16	25	1.96
105130630--105130688	20	3.0	20	92	0	100	37	11	20	30	1.89
105130739--105130857	47	2.5	48	89	8	172	27	21	24	26	1.99
105130739--105130857	24	5.0	24	84	9	154	27	21	24	26	1.99
105131049--105131150	31	3.1	31	78	17	123	39	15	21	23	1.92
105131066--105131173	38	2.8	38	94	1	189	39	14	22	23	1.91
105138756--105138803	25	1.9	25	86	0	69	33	25	16	25	1.96
105138847--105138905	20	3.0	20	92	0	100	37	11	20	30	1.89
105138956--105139074	24	5.0	23	84	8	143	28	21	24	26	1.99
105138956--105139073	47	2.5	47	89	6	168	27	21	24	26	1.99
105138956--105139073	23	5.0	24	84	7	152	27	21	24	26	1.99
105139264--105139362	31	3.1	31	83	14	137	39	15	21	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105139281--105139385	36	2.8	37	90	8	169	40	14	21	23	1.90
105146987--105147034	25	1.9	25	86	0	69	33	25	16	25	1.96
105147078--105147135	20	2.9	19	89	2	80	37	12	18	31	1.88
105147186--105147304	47	2.5	48	89	8	172	27	21	24	26	1.99
105147186--105147304	24	5.0	24	84	9	154	27	21	24	26	1.99
105147496--105147559	31	2.1	31	90	0	101	40	14	21	23	1.90
105147513--105147620	38	2.8	38	92	1	180	39	13	23	23	1.90
105156180--105156205	13	2.0	13	100	0	52	23	30	23	23	1.99
105156514--105156540	14	1.9	14	100	0	54	22	7	11	59	1.56
105164527--105164795	94	2.9	94	81	4	294	25	19	30	24	1.98
105164485--105164795	48	6.6	48	76	8	221	26	19	29	24	1.98
105164579--105164795	94	2.3	93	87	2	299	24	20	31	23	1.98
105171209--105171244	9	3.9	10	82	17	51	77	0	0	22	0.76
105171209--105171244	18	1.9	19	94	5	65	77	0	0	22	0.76
105172963--105173046	19	4.4	19	77	15	75	58	0	41	0	0.98
105172968--105173039	10	7.5	10	71	18	55	58	0	41	0	0.98
105176453--105176496	23	1.9	23	86	9	63	65	4	9	20	1.38
105180408--105180464	21	2.6	22	81	10	64	14	35	17	33	1.90
105180849--105181018	92	1.8	92	83	5	227	28	21	17	32	1.96
105183110--105183138	6	5.0	6	91	8	51	17	0	0	82	0.66
105183923--105183972	21	2.3	22	79	3	57	14	42	22	22	1.88
105201026--105201162	45	3.0	45	82	4	186	22	16	14	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105203467--105203744	109	2.6	109	79	4	274	31	26	16	25	1.97
105203548--105203760	108	2.0	109	83	4	270	30	27	15	25	1.96
105223370--105223402	5	6.6	5	100	0	66	21	0	0	78	0.75
105224721--105224745	12	2.1	12	100	0	50	44	8	0	48	1.32
105226775--105226818	2	22.0	2	100	0	88	50	0	0	50	1.00
105227480--105227539	2	30.0	2	100	0	120	50	0	0	50	1.00
105228411--105228437	6	4.5	6	100	0	54	44	0	0	55	0.99
105230035--105230069	3	11.7	3	93	0	61	65	0	31	2	1.07
105231134--105231167	3	11.3	3	100	0	68	32	0	0	67	0.91
105231958--105232047	29	3.0	31	70	20	93	42	7	12	37	1.71
105231958--105232075	60	2.0	58	83	8	148	40	9	11	38	1.74
105233732--105233785	21	2.5	22	78	3	65	53	11	3	31	1.53
105234616--105234657	11	3.9	11	78	6	50	19	0	4	76	0.96
105235086--105235110	11	2.3	11	100	0	50	20	0	24	56	1.43
105235621--105235662	2	21.0	2	100	0	84	50	0	0	50	1.00
105238321--105238351	2	15.5	2	100	0	62	51	0	0	48	1.00
105238433--105238478	23	2.0	24	86	4	67	60	2	0	36	1.09
105238628--105238668	21	1.9	21	90	5	64	58	4	7	29	1.46
105240607--105240814	80	2.6	80	83	3	240	26	23	25	24	2.00
105240609--105240814	40	5.2	40	82	3	218	26	23	25	24	2.00
105242254--105242283	2	15.0	2	100	0	60	50	0	0	50	1.00
105243573--105243669	44	2.2	45	81	9	110	30	22	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105243610--105243727	41	2.7	45	74	18	122	27	21	18	32	1.97
105244110--105244227	44	2.7	46	78	13	122	27	25	15	31	1.95
105243471--105244256	429	1.8	429	91	1	1306	27	25	16	31	1.97
105243883--105244283	133	3.0	132	67	14	338	26	26	17	29	1.97
105249105--105249231	61	2.1	60	95	1	227	58	7	12	21	1.59
105252874--105252920	15	3.1	15	81	6	58	53	4	21	21	1.63
105252873--105252914	16	2.7	15	82	7	57	52	4	19	23	1.65
105259156--105259182	2	13.5	2	100	0	54	48	0	0	51	1.00
105264346--105264388	17	2.4	18	88	3	61	23	13	13	48	1.79
105265398--105265537	27	5.3	27	83	2	167	40	19	10	30	1.84
105265399--105265522	53	2.3	54	88	1	196	40	21	9	28	1.85
105265399--105265537	53	2.6	52	85	4	188	40	19	10	30	1.84
105265533--105265719	27	7.0	27	88	1	259	33	17	21	27	1.96
105273989--105274091	29	3.6	29	84	1	118	25	30	14	30	1.95
105273992--105274111	29	4.2	28	76	10	91	27	30	13	29	1.94
105274329--105274366	16	2.4	16	95	0	67	10	21	18	50	1.76
105283203--105283236	14	2.4	14	95	0	59	41	0	5	52	1.25
105284369--105284429	32	1.9	32	86	0	86	39	6	6	47	1.55
105285976--105286005	11	2.6	12	89	10	53	33	6	0	60	1.23
105286149--105286234	3	28.7	3	100	0	172	33	0	0	66	0.92
105288374--105288434	3	20.3	3	96	0	113	31	1	0	67	1.01
105288487--105288528	20	2.2	19	91	4	66	33	7	0	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105288522--105288583	21	3.0	20	81	6	61	35	4	0	59	1.19
105288684--105288755	23	3.1	23	80	13	76	26	5	4	63	1.34
105292613--105292642	14	2.1	14	93	0	51	43	6	3	46	1.46
105299369--105299398	14	2.2	14	94	5	53	23	6	26	43	1.78
105299509--105299538	14	2.1	14	93	0	51	43	6	3	46	1.46
105307621--105308610	210	4.7	210	94	0	1652	29	19	22	29	1.98
105310304--105310370	3	22.3	3	100	0	134	32	0	0	67	0.91
105310308--105310380	9	8.4	8	96	1	83	32	1	0	65	1.01
105310431--105310506	17	4.7	16	72	18	59	34	6	0	59	1.24
105310431--105310506	33	2.3	32	79	18	86	34	6	0	59	1.24
105310624--105310694	23	3.1	23	80	15	76	26	5	4	63	1.35
105317353--105317454	37	2.6	38	75	20	95	57	4	4	32	1.41
105318958--105319443	93	5.4	92	78	12	311	36	19	15	28	1.93
105318955--105319464	87	5.6	92	78	10	398	37	18	16	28	1.92
105319262--105319300	15	2.6	15	88	8	53	53	5	12	28	1.60
105318955--105319879	87	10.7	86	72	15	397	35	18	17	28	1.94
105319378--105319518	75	1.9	73	89	2	219	31	21	17	29	1.96
105319482--105319689	84	2.4	85	82	8	237	34	17	15	32	1.92
105318955--105319859	249	3.5	248	76	12	710	35	19	17	28	1.94
105319784--105319934	75	2.0	75	88	3	223	28	21	21	28	1.99
105319902--105320007	54	1.9	55	84	5	144	38	18	13	29	1.89
105319987--105320020	13	2.5	13	90	4	50	58	8	11	20	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105319860--105320120	140	1.9	141	92	2	445	36	20	17	26	1.94
105320092--105320267	71	2.5	70	87	3	239	35	22	13	28	1.92
105328098--105328521	116	3.7	114	78	9	350	59	13	2	24	1.46
105329848--105329896	26	2.0	24	84	11	64	22	14	6	57	1.59
105331888--105331926	18	2.2	18	86	9	53	53	0	10	35	1.35
105336842--105336876	14	2.5	14	90	0	52	57	5	20	17	1.60
105336932--105336966	14	2.5	14	95	0	61	54	5	22	17	1.64
105336543--105337371	89	9.4	89	87	5	1141	34	20	17	27	1.95
105336543--105337371	179	4.7	178	87	5	1141	34	20	17	27	1.95
105337022--105337056	14	2.5	14	95	0	61	54	5	22	17	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427