genome.fa.s11.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  154  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42449204--42449305	37	2.8	37	89	1	152	24	19	29	26	1.98
42454655--42454922	40	6.7	39	84	5	315	26	28	19	25	1.99
42454635--42454922	80	3.6	80	90	1	427	27	28	19	24	1.99
42454639--42454926	120	2.4	120	84	6	370	27	28	19	24	1.99
42458466--42458622	6	25.8	6	76	14	153	47	14	18	19	1.82
42458466--42458622	85	1.8	85	94	0	278	47	14	18	19	1.82
42458758--42458812	27	2.0	27	86	6	76	36	20	25	18	1.94
42458976--42459034	22	2.7	22	81	0	64	32	22	25	20	1.98
42459121--42459203	27	3.1	26	86	5	103	37	22	21	18	1.94
42459402--42459597	27	7.3	26	82	5	212	25	19	19	35	1.95
42459402--42459597	54	3.6	54	85	2	250	25	19	19	35	1.95
42459404--42459597	81	2.4	82	84	3	241	25	19	18	36	1.95
42459602--42459983	27	14.2	27	84	7	490	39	9	23	28	1.85
42461999--42462155	6	25.8	6	76	14	153	48	14	17	19	1.81
42461992--42462155	85	1.9	85	94	0	292	48	14	17	18	1.81
42462273--42462338	27	2.5	26	85	7	87	37	22	22	16	1.93
42462273--42462346	27	2.8	27	78	13	82	36	21	24	17	1.95
42462511--42462569	22	2.7	22	81	0	64	32	22	25	20	1.98
42462657--42462739	27	3.1	26	84	5	94	37	24	20	18	1.94
42462933--42463278	27	12.8	27	84	4	439	39	9	22	28	1.85
42463008--42463311	81	3.8	81	84	6	305	38	9	24	27	1.86
42469101--42469387	40	7.2	39	82	5	335	27	27	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42469101--42469387	80	3.6	80	89	4	411	27	27	19	25	1.99
42472598--42472704	41	2.5	43	77	8	121	28	16	25	29	1.97
42489235--42489376	40	3.5	41	77	12	134	22	28	24	24	2.00
42497554--42497655	40	2.5	40	80	12	120	21	27	24	26	1.99
42506559--42506619	27	2.3	27	88	0	86	39	16	11	32	1.84
42510766--42510812	21	2.2	21	81	7	60	19	4	4	72	1.18
42510775--42510819	21	2.1	21	83	0	54	17	4	4	73	1.17
42513578--42513610	16	1.9	18	88	11	52	27	6	12	54	1.60
42515638--42515691	27	2.0	27	96	0	99	42	3	24	29	1.72
42516448--42516617	67	2.5	66	80	0	205	33	16	21	28	1.95
42518252--42518315	26	2.5	26	92	0	101	39	1	23	35	1.64
42519634--42519702	34	2.0	34	100	0	138	42	5	26	26	1.78
42526136--42526227	28	3.3	28	82	0	112	19	16	39	25	1.92
42526544--42527040	27	18.7	27	79	4	447	39	19	9	31	1.83
42526992--42527079	27	3.3	27	84	4	99	37	18	14	29	1.91
42527227--42527329	50	2.1	50	92	0	170	31	18	18	32	1.95
42538014--42538051	20	1.9	20	88	0	58	52	10	2	34	1.50
42547149--42547212	31	2.1	31	96	0	119	23	21	15	39	1.92
42547400--42547494	24	4.0	24	85	10	124	26	24	21	28	1.99
42547400--42547493	47	2.0	49	85	12	133	26	24	21	27	1.99
42547545--42547604	20	3.0	20	95	0	111	33	20	10	36	1.86
42547545--42547599	11	5.4	11	70	16	55	30	20	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42547719--42547844	63	2.0	63	100	0	252	31	15	14	38	1.88
42549529--42549656	39	3.3	38	83	5	114	26	29	20	23	1.99
42549547--42549672	39	3.2	39	89	2	164	27	29	19	23	1.98
42553651--42553728	38	2.0	39	97	2	149	28	16	10	44	1.80
42560073--42560117	17	2.6	17	96	0	81	22	35	17	24	1.95
42561684--42561723	20	2.0	20	100	0	80	30	10	0	60	1.30
42581653--42581707	26	2.1	26	96	0	101	32	9	14	43	1.77
42586698--42586728	13	2.4	13	100	0	62	32	32	25	9	1.88
42592443--42592574	43	3.1	43	84	2	167	24	29	19	26	1.98
42593209--42593343	70	1.9	70	90	0	216	37	18	12	31	1.88
42596469--42596648	40	4.6	40	88	3	249	25	30	21	23	1.99
42596469--42596648	79	2.3	80	87	3	249	25	30	21	23	1.99
42603048--42603232	40	4.6	40	79	8	198	24	24	28	22	2.00
42603050--42603232	80	2.3	81	83	6	221	24	24	28	22	1.99
42606420--42606485	30	2.2	30	83	8	80	56	19	6	18	1.62
42606720--42606781	21	3.0	21	97	0	115	0	53	20	25	1.46
42607192--42607220	14	2.1	14	93	6	51	58	6	0	34	1.25
42607386--42607424	17	2.4	17	86	4	53	48	0	10	41	1.37
42613604--42613787	40	4.6	39	75	6	138	26	23	27	22	2.00
42613644--42613832	80	2.4	81	77	4	186	23	24	29	22	1.99
42615723--42615912	9	20.6	9	72	11	107	37	1	13	47	1.52
42615723--42615885	71	2.3	69	84	4	202	38	1	12	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615759--42615943	96	2.0	90	86	9	259	38	2	11	47	1.53
42615699--42615912	114	1.9	114	84	5	290	38	1	13	47	1.51
42615759--42615943	87	2.1	87	84	7	234	38	2	11	47	1.53
42616017--42616072	15	3.8	15	76	21	64	51	0	1	46	1.11
42616282--42617522	358	3.5	358	99	0	2428	38	11	14	35	1.83
42617746--42617774	15	1.9	15	100	0	58	48	20	6	24	1.74
42617976--42618344	183	2.0	183	96	0	684	42	14	15	27	1.86
42618415--42618444	14	2.2	13	94	5	51	36	13	0	50	1.42
42621308--42621365	28	2.1	28	83	6	73	36	29	1	32	1.68
42621342--42621385	21	2.1	21	86	0	61	36	34	2	27	1.70
42621352--42621397	21	2.2	22	77	14	53	43	30	2	23	1.66
42621366--42621433	28	2.5	27	83	11	77	48	32	1	17	1.56
42621594--42621647	28	1.9	28	85	7	74	37	40	1	20	1.63
42621615--42621658	21	2.0	22	91	4	72	43	38	0	18	1.50
42621732--42621910	41	4.4	41	92	0	279	21	21	18	37	1.94
42621732--42621941	41	5.2	40	88	3	260	21	21	19	38	1.94
42621965--42621990	12	2.2	12	100	0	52	46	30	15	7	1.74
42633426--42633456	3	10.3	3	92	0	53	0	29	0	70	0.87
42633426--42633468	9	4.8	9	83	8	52	0	23	0	76	0.78
42634542--42634620	40	2.0	40	100	0	158	39	20	2	37	1.66
42637721--42637759	13	3.1	13	85	3	53	51	0	7	41	1.31
42637738--42637781	15	2.9	14	86	13	52	54	2	9	34	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42637738--42637767	15	2.1	15	93	6	53	56	0	6	36	1.26
42637837--42637901	27	2.4	26	80	10	76	58	3	4	33	1.34
42640015--42640111	44	2.2	45	80	10	110	30	25	15	27	1.96
42639674--42640200	177	3.0	176	85	2	682	28	25	17	28	1.98
42640274--42640395	64	1.9	63	89	1	190	39	15	15	29	1.88
42652958--42652983	13	2.0	13	100	0	52	53	0	7	38	1.30
42653118--42653148	2	15.5	2	100	0	62	51	0	0	48	1.00
42656170--42656347	52	3.5	50	90	4	268	27	14	30	27	1.95
42656170--42656347	51	3.5	51	91	4	272	27	14	30	27	1.95
42658481--42658608	27	4.7	27	93	0	202	30	14	17	37	1.90
42658480--42658672	27	7.1	27	84	6	94	33	17	17	31	1.93
42658481--42658635	81	1.9	81	85	2	213	32	16	17	34	1.92
42658602--42658716	27	4.3	27	84	2	124	39	18	20	21	1.93
42658602--42658716	54	2.1	54	82	3	142	39	18	20	21	1.93
42659058--42659109	18	2.8	19	77	8	63	21	21	19	38	1.94
42659060--42659115	18	3.1	18	75	10	60	19	21	19	39	1.93
42660669--42660693	10	2.5	10	100	0	50	16	20	8	56	1.65
42663665--42663765	43	2.3	43	87	0	139	22	17	32	26	1.97
42667740--42667826	27	3.2	27	82	9	106	34	25	11	28	1.91
42668082--42668197	43	2.7	43	89	0	169	20	18	33	26	1.96
42678741--42678765	13	1.9	13	100	0	50	24	4	32	40	1.73
42681002--42681121	55	2.2	54	78	11	129	23	25	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42680241--42682047	909	2.0	911	92	0	3010	26	12	23	36	1.91
42686714--42686873	29	5.5	29	86	6	207	27	25	13	33	1.93
42686714--42686873	59	2.8	57	88	4	214	27	25	13	33	1.93
42694159--42694316	29	5.5	30	88	8	229	26	25	13	33	1.94
42694159--42694316	59	2.8	55	90	4	226	26	25	13	33	1.94
42699535--42699640	40	2.6	41	85	5	137	27	27	22	22	1.99
42707484--42707587	40	2.7	39	83	8	124	26	27	23	22	1.99
42709527--42709557	15	2.1	15	100	0	62	32	19	19	29	1.96
42711618--42711735	41	3.1	41	60	28	98	32	17	28	21	1.96
42711586--42711749	71	2.3	71	100	0	328	35	17	28	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427