genome.fa.s11.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  193  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53632566--53632729	43	3.8	43	86	0	229	14	20	31	34	1.92
53632712--53632748	19	1.9	19	100	0	74	10	10	43	35	1.75
53632740--53632898	45	3.6	44	83	5	198	21	22	28	27	1.99
53635546--53635580	9	3.7	9	85	14	52	22	2	31	42	1.68
53636158--53636266	37	2.9	37	93	0	173	27	30	18	23	1.98
53636426--53636551	47	2.7	47	88	0	180	23	30	13	32	1.93
53638312--53638561	40	6.2	40	90	1	385	25	24	28	22	1.99
53646483--53646719	40	6.2	40	77	14	268	24	24	29	21	1.99
53646506--53646701	107	1.8	107	87	2	295	24	23	29	22	1.99
53652076--53652235	29	5.5	29	82	4	180	26	16	31	25	1.97
53655198--53655255	25	2.3	25	76	5	64	32	17	27	22	1.96
53657656--53657702	19	2.5	19	77	16	53	59	0	8	31	1.27
53663871--53663994	29	4.3	30	78	8	125	29	28	12	30	1.92
53663878--53663990	58	2.0	58	82	5	140	27	30	12	30	1.93
53664063--53664108	18	2.5	19	86	6	60	19	36	15	28	1.92
53664204--53664256	16	3.4	15	77	10	61	7	20	20	50	1.72
53665468--53665500	16	2.1	16	94	0	57	12	3	33	51	1.54
53678893--53679036	39	3.7	39	89	0	198	23	20	26	29	1.99
53684803--53684832	14	2.1	14	93	0	51	33	23	20	23	1.97
53686913--53687056	39	3.7	39	89	0	207	22	20	27	29	1.98
53688766--53688932	40	4.2	40	79	6	169	26	22	26	24	2.00
53695962--53696128	40	4.2	40	79	6	169	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53699644--53699833	79	2.4	80	86	8	280	28	20	25	26	1.99
53699637--53699833	40	4.9	40	89	4	267	27	20	25	25	1.99
53699637--53699861	40	5.7	40	87	6	230	26	20	26	26	1.99
53703674--53703832	29	5.5	29	82	5	171	25	16	31	25	1.97
53703670--53703834	57	2.9	58	79	6	176	26	16	31	25	1.96
53711730--53711889	29	5.5	29	82	4	180	26	16	31	25	1.97
53726524--53726615	40	2.3	40	94	0	157	25	30	21	22	1.99
53741196--53741508	47	6.7	47	87	6	429	32	7	30	28	1.86
53741227--53741504	139	2.0	138	88	3	416	31	8	31	28	1.88
53741381--53741458	25	3.2	24	68	17	72	32	3	30	33	1.76
53749683--53749735	26	2.0	26	100	0	106	54	3	3	37	1.36
53750906--53751061	43	3.7	41	73	10	116	26	17	26	28	1.98
53751692--53751731	2	19.5	2	89	5	62	47	0	5	47	1.24
53754714--53754767	24	2.4	22	81	9	63	61	9	1	27	1.37
53754778--53754849	22	3.3	22	90	3	110	37	0	38	23	1.55
53754777--53754861	33	2.6	33	81	3	91	37	0	37	24	1.56
53754778--53754861	11	7.6	11	73	0	78	36	0	38	25	1.56
53754778--53754861	22	3.8	22	87	0	105	36	0	38	25	1.56
53755225--53755263	18	2.1	19	90	4	62	30	7	17	43	1.77
53757247--53757282	12	3.3	11	88	11	56	0	8	0	91	0.41
53757246--53757293	22	2.2	22	81	7	53	4	12	4	79	1.02
53767226--53767292	34	2.0	33	86	13	93	32	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53769116--53769265	43	3.5	43	76	9	155	26	18	25	30	1.98
53770976--53771084	54	2.0	54	87	0	155	33	9	20	37	1.84
53783348--53783394	19	2.4	20	82	10	53	25	6	10	57	1.56
53783882--53783911	13	2.4	13	94	5	53	40	0	30	30	1.57
53789318--53789362	17	2.6	17	100	0	90	26	26	37	8	1.86
53794175--53794215	3	13.7	3	100	0	82	65	0	0	34	0.93
53799043--53799112	19	3.7	19	77	5	79	34	10	18	37	1.84
53799043--53799097	20	2.8	20	78	8	60	30	9	21	38	1.85
53800944--53801085	40	3.5	40	83	1	124	27	23	26	22	1.99
53800983--53801111	40	3.2	39	84	6	152	24	22	27	25	2.00
53811621--53811762	40	3.5	40	83	1	124	27	23	26	22	1.99
53811660--53811788	40	3.2	39	84	6	152	24	22	27	25	2.00
53815892--53815981	29	3.1	28	89	7	137	27	13	28	30	1.94
53818006--53818049	17	2.6	17	96	3	81	25	25	11	38	1.89
53822823--53822885	32	2.0	32	87	0	90	28	1	14	55	1.48
53822824--53822892	32	2.2	32	83	0	84	26	2	15	55	1.55
53822857--53822922	25	3.0	21	75	16	78	28	1	15	54	1.50
53824182--53824236	28	2.0	27	92	3	92	56	0	3	40	1.17
53824223--53824264	18	2.3	18	91	0	66	47	0	2	50	1.14
53824341--53824378	19	2.0	19	94	0	67	50	5	10	34	1.59
53824788--53825112	179	1.8	179	88	1	499	39	8	19	32	1.81
53827765--53827796	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53827938--53827981	15	2.9	15	90	6	63	13	20	13	52	1.74
53827938--53827996	30	2.0	30	83	6	75	13	20	13	52	1.74
53830174--53830323	40	3.8	40	78	8	139	26	22	28	23	1.99
53838154--53838319	40	4.2	40	78	9	146	25	22	27	24	2.00
53840674--53840833	29	5.5	29	82	4	180	25	31	16	26	1.97
53848606--53848765	29	5.5	29	82	4	180	25	31	16	26	1.97
53859501--53859786	40	7.2	40	92	0	466	23	21	27	27	1.99
53865406--53865496	28	3.2	28	88	0	137	25	36	17	20	1.94
53873198--53873293	28	3.5	28	82	5	124	26	35	15	22	1.94
53878124--53878265	40	3.5	40	80	5	135	25	28	19	26	1.99
53882599--53882748	67	2.2	67	81	8	171	32	17	28	21	1.96
53882623--53882806	67	2.8	64	77	8	194	29	17	29	22	1.97
53883702--53883772	37	1.9	37	94	0	124	25	30	19	23	1.98
53883919--53884053	48	2.8	48	89	0	207	31	28	6	34	1.83
53884023--53884310	47	6.1	47	92	0	468	26	28	11	33	1.92
53884185--53884262	23	3.2	25	64	29	69	29	32	10	28	1.90
53884210--53884285	22	3.3	22	65	28	59	25	31	13	30	1.93
53893404--53893574	39	4.4	39	87	0	234	24	21	30	23	1.99
53895800--53895866	33	2.0	33	94	0	116	40	13	13	32	1.83
53898844--53898874	2	16.0	2	93	6	55	51	0	0	48	1.00
53903565--53903682	31	3.5	35	89	9	135	22	23	16	37	1.94
53903588--53903682	31	3.1	31	98	0	181	23	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53903874--53904016	24	6.0	24	91	4	209	26	22	22	28	1.99
53903874--53904015	47	3.0	48	90	5	207	26	22	22	28	1.99
53903873--53904016	71	2.0	72	89	4	220	26	22	22	29	1.99
53904067--53904126	20	3.0	20	95	0	111	33	20	10	36	1.86
53904067--53904121	11	5.4	11	70	16	55	30	20	10	38	1.87
53904169--53904216	25	1.9	25	86	0	69	25	16	25	33	1.96
53905374--53905430	27	2.1	27	87	6	80	21	24	24	29	1.99
53905492--53905748	27	9.4	27	77	5	131	33	9	19	37	1.84
53905582--53905721	54	2.6	54	82	4	183	31	7	21	39	1.82
53905688--53905868	54	3.4	54	82	2	186	36	7	24	31	1.84
53905700--53905855	27	5.8	26	83	8	181	38	8	25	28	1.84
53905689--53905868	81	2.2	80	76	10	195	36	7	24	31	1.84
53905861--53905950	27	3.3	26	80	6	99	32	8	17	41	1.81
53905845--53905950	54	2.0	53	83	5	133	31	9	19	39	1.84
53909151--53909214	27	2.4	27	81	0	74	32	14	25	28	1.94
53909311--53909473	27	6.0	27	81	0	182	26	23	19	31	1.98
53909311--53909473	54	3.0	53	82	5	202	26	23	19	31	1.98
53913981--53914050	27	2.6	27	83	0	95	37	21	22	18	1.94
53914003--53914072	27	2.6	27	80	8	72	35	21	21	21	1.96
53914208--53914426	27	8.1	27	81	0	224	25	22	18	34	1.96
53914635--53914669	17	2.0	18	88	5	54	20	42	22	14	1.88
53923233--53923390	83	1.9	82	82	7	194	30	16	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53925618--53925660	22	2.0	22	90	4	70	32	39	6	20	1.80
53927023--53927172	40	3.8	39	76	10	117	22	27	24	26	1.99
53930381--53930488	43	2.5	43	77	7	103	35	23	15	25	1.94
53935475--53935586	27	4.2	26	83	7	134	16	24	22	36	1.94
53935475--53935595	54	2.2	54	85	2	163	18	23	22	35	1.95
53940941--53941072	40	3.3	40	85	4	115	25	27	24	22	2.00
53940974--53941125	40	3.8	40	89	5	202	23	28	24	23	2.00
53940943--53941125	80	2.3	80	78	9	203	25	27	24	22	2.00
53946651--53946727	27	2.8	26	84	7	91	20	22	20	36	1.95
53948545--53948570	13	2.0	13	100	0	52	23	38	23	15	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427