genome.fa.s11.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  170  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47343535--47343763	114	2.0	114	98	0	440	34	15	27	23	1.94
47343738--47343910	46	3.7	46	77	10	199	23	21	26	28	1.99
47343735--47343905	93	1.8	93	93	0	297	22	21	27	28	1.99
47349162--47349206	20	2.2	20	88	0	63	35	15	20	28	1.93
47353926--47353973	26	1.9	24	100	0	78	43	10	16	29	1.81
47356835--47356879	20	2.2	20	88	0	63	35	15	20	28	1.93
47364629--47364687	30	2.0	30	100	0	118	38	30	13	16	1.88
47369193--47369260	29	2.3	30	80	11	79	25	11	7	55	1.61
47369474--47369530	29	1.9	29	85	3	78	31	5	10	52	1.58
47372297--47372365	32	2.2	32	81	5	77	27	21	13	37	1.90
47372313--47372376	32	2.0	32	100	0	128	21	25	12	40	1.88
47373029--47373072	19	2.4	19	85	7	56	50	0	9	40	1.34
47373166--47373194	15	1.9	15	100	0	58	41	0	0	58	0.98
47374140--47374180	5	8.2	5	86	0	55	2	17	0	80	0.82
47374140--47374213	20	3.7	20	70	3	60	4	25	0	70	1.05
47375259--47375319	26	2.3	27	80	11	72	32	27	13	26	1.93
47375641--47375779	60	2.3	59	82	8	156	29	20	24	25	1.99
47377835--47377878	19	2.4	19	85	7	56	50	0	9	40	1.34
47377970--47377998	15	1.9	15	100	0	58	41	0	0	58	0.98
47380438--47380573	60	2.3	59	86	8	177	27	20	25	26	1.99
47380471--47380583	28	3.9	27	71	21	95	28	20	24	26	1.99
47383761--47383796	5	7.2	5	90	0	54	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47385354--47385406	28	1.9	27	88	3	79	28	16	28	26	1.97
47386152--47386184	18	1.9	17	88	11	50	42	12	15	30	1.83
47395343--47395519	46	3.8	46	90	1	266	22	20	25	31	1.98
47397544--47397586	20	2.2	20	95	0	77	18	27	32	20	1.96
47402708--47402847	47	2.9	48	80	2	165	30	25	18	25	1.98
47405568--47405628	30	2.0	30	87	0	86	29	24	8	37	1.84
47407091--47407134	19	2.3	19	84	4	52	31	9	11	47	1.71
47407520--47407641	46	2.7	46	93	2	210	44	23	7	24	1.79
47408590--47408650	32	1.9	32	90	6	97	47	18	6	27	1.73
47419306--47419336	14	2.2	14	100	0	62	41	0	6	51	1.27
47421463--47421556	43	2.2	43	88	0	134	25	13	25	35	1.93
47426095--47426223	24	5.3	23	86	10	152	20	25	20	33	1.97
47428244--47428303	30	2.0	30	96	0	111	35	23	6	35	1.81
47428584--47428747	43	3.8	42	73	7	134	29	25	18	27	1.98
47432948--47433034	39	2.2	39	89	0	138	27	25	22	24	2.00
47439953--47439990	18	2.1	18	95	0	67	18	28	5	47	1.70
47440431--47440455	10	2.5	10	100	0	50	0	16	0	84	0.63
47441659--47441770	58	1.9	58	83	5	145	52	14	8	24	1.69
47443538--47443567	2	15.0	2	100	0	60	50	0	0	50	1.00
47449975--47450054	33	2.4	34	79	6	92	28	18	23	28	1.98
47453379--47453439	30	2.0	30	83	0	77	31	22	8	37	1.84
47459340--47459381	19	2.2	19	100	0	84	50	16	0	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47460439--47460470	15	2.1	15	94	0	55	53	15	0	31	1.43
47463202--47463265	31	2.1	31	90	0	101	23	25	15	35	1.94
47463457--47463599	24	6.0	24	86	4	182	27	21	22	28	1.99
47463482--47463598	47	2.5	48	90	1	173	28	21	23	27	1.99
47463456--47463595	71	2.0	72	85	4	194	27	22	22	27	1.99
47463649--47463729	20	4.1	20	95	0	135	32	20	12	34	1.90
47463649--47463704	11	5.5	11	71	16	57	32	19	12	35	1.89
47465057--47465390	27	12.5	27	87	3	419	39	8	22	28	1.84
47465058--47465390	133	2.5	132	86	3	470	39	9	22	28	1.84
47465057--47465394	160	2.1	160	88	3	493	39	8	23	28	1.85
47465057--47465390	80	4.2	81	85	4	401	39	8	22	28	1.84
47470427--47470931	27	18.7	27	73	8	213	38	20	8	31	1.84
47470497--47470680	55	3.4	53	77	9	174	38	19	9	32	1.84
47470951--47471024	27	2.7	27	76	12	71	37	20	20	21	1.94
47471735--47471821	20	4.3	20	92	2	140	40	10	18	31	1.84
47471871--47472006	26	5.3	26	85	3	172	27	20	23	27	1.99
47471871--47472006	52	2.7	51	89	5	197	27	20	23	27	1.99
47472138--47472229	42	2.2	42	88	3	132	30	13	20	35	1.91
47480833--47481020	40	4.7	40	92	2	247	25	28	22	24	1.99
47488893--47489105	40	5.7	38	80	13	205	25	28	20	25	1.99
47500630--47500797	40	4.2	40	79	1	158	22	27	23	26	2.00
47500646--47500795	80	1.9	80	84	5	205	21	27	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47515012--47515044	16	2.1	16	94	0	57	57	36	0	6	1.23
47516265--47516319	24	2.3	24	83	0	65	52	21	16	9	1.71
47516557--47516653	29	3.4	29	79	1	115	28	15	30	24	1.96
47520710--47520768	24	2.5	24	85	0	73	49	15	22	13	1.79
47520994--47521074	29	2.8	29	82	0	99	24	18	32	24	1.97
47527943--47528102	29	5.5	29	80	4	162	26	30	16	26	1.97
47533510--47533624	55	2.1	56	83	8	146	34	21	24	19	1.96
47533535--47533624	27	3.2	27	85	7	119	32	23	24	20	1.98
47533730--47533822	28	3.3	28	81	3	116	30	9	24	35	1.88
47541022--47541096	37	2.0	37	94	0	132	29	30	8	32	1.86
47552357--47552532	46	3.8	46	80	12	225	21	21	28	28	1.98
47552354--47552524	93	1.8	93	96	0	315	21	21	29	28	1.98
47555476--47555544	15	4.6	15	83	0	84	11	17	13	57	1.64
47555467--47555554	30	3.0	30	81	8	99	10	17	15	56	1.66
47557914--47558089	46	3.8	46	80	12	225	21	21	28	28	1.98
47557910--47558081	93	1.8	93	96	0	317	20	21	29	27	1.98
47559929--47560205	40	7.0	40	90	3	402	23	22	28	25	1.99
47559929--47560205	118	2.3	119	88	5	409	23	22	28	25	1.99
47568075--47568398	40	8.1	40	91	1	472	23	22	27	26	1.99
47579520--47579553	16	2.1	17	88	5	52	5	23	0	70	1.09
47583788--47583955	40	4.2	39	81	4	151	24	26	22	26	2.00
47583804--47583955	80	1.9	80	83	5	200	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47590657--47590806	30	5.2	29	80	4	151	30	27	13	29	1.94
47591024--47591060	16	2.3	16	90	0	56	8	21	18	51	1.72
47594793--47594829	15	2.4	16	86	13	51	29	18	2	48	1.62
47596741--47596801	30	2.0	30	90	0	95	29	24	6	39	1.80
47600055--47600202	79	1.9	80	87	4	219	32	23	20	22	1.98
47600055--47600202	40	3.7	40	82	5	167	32	23	20	22	1.98
47602135--47602197	30	2.1	31	90	3	101	23	23	15	36	1.94
47602389--47602505	23	5.0	24	91	7	179	28	22	21	28	1.99
47602559--47602601	20	2.2	20	100	0	86	32	18	11	37	1.87
47602638--47602685	25	1.9	25	86	0	69	25	16	25	33	1.96
47610149--47610211	30	2.1	31	90	3	101	23	23	15	36	1.94
47610404--47610544	23	6.0	24	88	10	211	28	21	20	29	1.98
47610598--47610640	20	2.2	20	100	0	86	32	18	11	37	1.87
47610675--47610722	25	1.9	25	86	0	69	25	16	25	33	1.96
47616038--47616209	67	2.6	66	81	7	170	31	16	29	22	1.96
47616062--47616245	67	2.8	64	78	8	203	28	16	30	23	1.96
47630822--47630979	40	4.0	40	92	1	246	29	25	20	24	1.99
47635515--47635662	47	3.1	48	86	4	212	29	25	18	26	1.98
47640622--47640826	27	7.6	27	90	2	268	29	23	7	39	1.83
47640516--47640972	27	16.9	27	81	6	147	34	21	8	34	1.84
47640622--47640826	81	2.5	81	88	1	295	29	23	7	39	1.83
47640805--47640944	54	2.6	54	85	4	192	39	22	7	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47640562--47640863	81	3.7	81	78	2	250	32	23	7	36	1.84
47640820--47640974	81	1.9	81	85	7	217	40	20	9	30	1.83
47641087--47641151	27	2.4	27	82	5	78	35	18	24	21	1.96
47642310--47642357	25	1.9	25	86	0	69	33	25	16	25	1.96
47642396--47642472	9	7.9	9	72	16	64	35	9	20	35	1.85
47642405--47642476	11	7.1	11	70	17	66	36	12	19	31	1.89
47642394--47642476	20	4.2	20	96	0	157	36	12	19	32	1.88
47642531--47642719	24	8.0	24	89	4	278	29	19	21	29	1.98
47642912--47642975	31	2.1	31	90	0	101	35	15	23	25	1.94
47642962--47642989	7	4.0	7	100	0	56	57	0	14	28	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427