genome.fa.s11.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  184  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50683084--50683173	27	3.4	27	86	6	130	45	7	20	26	1.78
50683065--50683198	52	2.5	51	72	11	126	38	8	21	30	1.84
50685784--50685901	41	3.1	41	60	28	98	32	17	28	21	1.96
50685752--50685915	71	2.3	71	100	0	328	35	17	28	18	1.94
50693357--50693474	41	3.1	41	60	28	98	32	17	28	21	1.96
50693325--50693488	71	2.3	71	100	0	328	35	17	28	18	1.94
50700977--50701318	47	7.3	47	93	0	567	33	9	28	28	1.88
50704662--50704975	46	6.7	48	68	17	164	22	28	19	28	1.98
50710805--50710918	45	2.5	44	83	8	133	23	30	16	28	1.96
50710843--50711018	45	3.8	44	75	10	149	21	29	20	28	1.98
50718529--50718624	42	2.3	43	81	7	115	34	23	13	28	1.93
50722688--50722800	29	4.0	29	86	2	149	25	14	29	30	1.95
50722686--50722801	28	4.1	29	84	5	148	26	13	28	31	1.94
50722686--50722801	57	2.0	57	86	3	162	26	13	28	31	1.94
50731456--50731502	23	2.0	23	83	8	58	21	25	6	46	1.74
50732191--50732229	19	2.1	19	85	0	51	33	38	7	20	1.81
50741988--50742206	24	9.0	24	93	2	341	28	20	20	30	1.98
50742259--50742322	20	3.2	20	90	0	101	31	20	14	34	1.92
50742259--50742312	11	5.3	11	70	17	53	31	18	14	35	1.91
50748487--50748525	21	1.9	20	89	5	60	33	0	20	46	1.51
50751915--50751992	39	2.0	39	92	5	131	39	15	7	37	1.76
50751924--50751993	19	3.6	19	67	17	54	38	12	8	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50752714--50752779	32	2.1	32	100	0	132	46	22	6	24	1.74
50759020--50759073	16	3.3	16	74	20	58	64	0	29	5	1.16
50759016--50759070	18	3.2	17	72	17	51	61	0	32	5	1.19
50759418--50759753	168	2.0	168	94	0	582	25	29	15	29	1.96
50760248--50760281	16	2.1	16	94	0	59	70	2	0	26	1.01
50761915--50761956	22	2.0	22	85	4	59	21	26	42	9	1.83
50762605--50762642	16	2.4	16	95	0	67	57	21	2	18	1.52
50764143--50764253	28	4.0	29	85	4	140	27	14	30	27	1.95
50764141--50764250	55	2.0	56	85	7	152	27	14	30	27	1.95
50772991--50773088	28	3.5	28	84	4	108	29	16	24	29	1.96
50780671--50780768	28	3.5	28	84	4	108	29	16	24	29	1.96
50791168--50791205	14	2.7	14	100	0	76	57	0	7	34	1.28
50800064--50800301	49	4.8	49	86	2	287	29	26	17	26	1.97
50800075--50800308	99	2.3	100	83	2	301	29	27	17	25	1.97
50804474--50804644	93	1.8	93	96	0	315	28	28	21	21	1.99
50804469--50804641	46	3.7	46	78	13	210	28	27	21	21	1.99
50805047--50805106	30	2.0	30	90	0	93	30	25	8	36	1.85
50811993--50812162	92	1.8	92	96	0	313	28	28	21	21	1.99
50811988--50812159	46	3.7	46	80	11	217	29	27	21	21	1.99
50811990--50812178	46	4.1	46	73	17	151	28	28	21	21	1.99
50812571--50812630	30	2.0	30	90	0	93	30	25	8	36	1.85
50814875--50815130	67	3.9	64	75	10	193	30	16	28	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50824504--50824550	23	2.0	23	100	0	94	21	12	17	48	1.79
50825134--50825275	71	2.0	71	98	0	275	23	23	19	33	1.97
50825245--50825340	47	2.0	47	93	0	165	19	26	17	36	1.94
50828229--50828269	9	4.6	9	82	11	57	75	2	0	21	0.92
50828920--50828963	19	2.3	20	80	11	56	29	2	4	63	1.26
50835548--50835585	18	2.1	19	85	5	51	34	0	7	57	1.28
50838357--50838430	29	2.6	29	95	0	139	27	14	31	27	1.95
50838414--50838489	29	2.6	29	78	0	89	22	19	35	22	1.96
50838357--50838489	58	2.3	58	80	2	133	24	17	33	24	1.96
50840584--50840631	25	1.9	25	83	8	62	54	2	2	41	1.24
50842421--50842461	18	2.3	18	83	4	57	24	29	34	12	1.91
50842432--50842470	18	2.2	18	85	0	51	23	35	33	7	1.83
50854195--50854269	37	2.0	37	92	0	123	32	6	16	45	1.73
50859791--50859967	40	4.4	40	90	2	277	25	29	22	22	1.99
50864037--50864384	187	1.9	186	87	1	509	31	22	27	18	1.97
50865038--50865097	3	20.0	3	100	0	120	33	0	0	66	0.92
50866628--50866680	6	8.7	6	89	4	70	16	3	3	75	1.10
50866628--50866689	18	3.4	18	82	4	79	16	4	4	74	1.17
50875949--50876170	46	4.8	46	85	7	315	20	21	29	28	1.98
50875945--50876116	93	1.8	93	100	0	344	20	21	30	27	1.98
50880715--50880746	16	2.0	16	93	0	55	25	15	12	46	1.81
50882150--50882319	46	3.7	45	80	9	209	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50882155--50882323	92	1.8	91	94	1	302	28	28	21	21	1.99
50887690--50887860	93	1.8	93	96	0	315	28	28	21	21	1.99
50887685--50887857	46	3.7	46	78	13	210	28	27	21	21	1.99
50899431--50899462	13	2.5	13	94	0	55	34	15	6	43	1.72
50899743--50899846	42	2.4	43	79	7	113	36	22	15	25	1.93
50901420--50901572	39	3.9	39	90	0	225	24	30	20	24	1.99
50901389--50901571	78	2.3	79	90	1	278	23	29	22	24	1.99
50911230--50911312	43	1.9	43	87	0	121	36	21	15	26	1.94
50918905--50919034	40	3.2	40	84	4	174	22	24	29	23	1.99
50926897--50927026	40	3.2	40	84	4	174	22	24	29	23	1.99
50928411--50928503	48	1.9	48	80	8	109	26	24	19	29	1.98
50933030--50933098	28	2.5	28	92	2	113	43	26	10	20	1.83
50937899--50937992	48	2.0	48	83	8	120	29	27	14	27	1.96
50940964--50941103	27	5.2	27	81	6	167	35	16	20	27	1.94
50940964--50941106	54	2.6	54	87	4	216	34	17	20	27	1.95
50941619--50941680	22	2.9	22	81	11	83	17	25	22	33	1.96
50941671--50941723	20	2.7	19	77	8	61	9	16	33	39	1.81
50941935--50942053	6	19.3	6	70	17	66	20	21	12	46	1.83
50941957--50942032	31	2.5	31	88	0	116	19	23	13	43	1.86
50941935--50942032	25	3.7	25	74	15	97	20	22	12	44	1.84
50947959--50948076	41	3.1	41	60	28	98	32	17	28	21	1.96
50947927--50948090	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50955534--50955651	41	3.1	41	60	28	98	32	17	28	21	1.96
50955502--50955665	71	2.3	71	100	0	328	35	17	28	18	1.94
50957406--50957453	20	2.5	19	77	9	53	70	0	10	18	1.15
50957432--50957463	6	4.9	7	92	7	50	75	0	0	25	0.81
50957406--50957463	19	3.0	20	82	5	66	70	0	8	20	1.13
50959420--50959514	42	2.2	42	85	5	120	31	25	17	25	1.97
50959401--50959557	43	3.7	43	80	7	158	31	27	18	22	1.97
50963570--50963640	37	1.9	37	94	0	124	32	26	5	35	1.80
50966315--50966486	93	1.8	93	96	0	317	27	30	22	20	1.98
50966307--50966482	46	3.8	46	81	10	232	28	29	21	20	1.98
50968865--50968952	29	3.0	29	80	8	97	56	15	17	10	1.66
50968865--50968943	15	5.4	15	77	10	83	58	13	17	10	1.63
50968876--50968952	15	5.2	15	75	9	77	55	15	16	11	1.68
50971893--50972064	93	1.8	93	96	0	317	27	30	22	20	1.98
50971885--50972060	46	3.8	46	81	10	232	28	29	21	20	1.98
50973589--50973755	40	4.2	40	81	2	176	23	26	22	26	2.00
50974574--50974619	17	2.5	19	74	22	53	34	23	17	23	1.96
50979686--50979852	40	4.2	40	82	2	185	24	26	22	26	2.00
50980672--50980717	17	2.5	19	74	22	53	34	23	17	23	1.96
50985516--50985680	43	3.9	43	77	11	169	32	25	15	26	1.95
50990415--50990486	36	2.0	36	100	0	144	41	11	13	33	1.80
50993610--50993669	27	2.3	26	85	2	75	21	25	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51002896--51003237	47	7.3	47	95	0	585	32	9	29	28	1.88
51006797--51006963	40	4.2	40	81	2	167	23	26	22	26	2.00
51006813--51006963	80	1.9	79	83	6	198	23	27	23	26	2.00
51008146--51008254	56	2.0	56	81	5	132	28	13	17	40	1.88
51014793--51014921	40	3.3	38	82	5	159	24	27	23	24	2.00
51014793--51014958	79	2.1	79	83	6	203	23	27	22	26	2.00
51014809--51014958	40	3.8	38	82	11	144	22	27	23	26	2.00
51017468--51018067	48	12.6	48	96	2	1104	33	7	27	31	1.85
51018115--51018245	37	3.2	37	78	20	154	25	19	32	22	1.98
51018121--51018216	48	2.0	48	100	0	192	25	22	31	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427