genome.fa.s11.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  187  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51570708--51570881	46	3.8	46	79	8	201	21	20	29	28	1.98
51575563--51575693	46	2.8	45	73	11	140	21	19	29	29	1.98
51577884--51578147	47	5.6	48	77	10	174	23	29	18	28	1.98
51577925--51578146	46	4.8	45	76	11	173	22	29	19	28	1.98
51581745--51581799	28	2.0	28	88	0	83	30	14	30	23	1.94
51585101--51585130	2	15.0	2	100	0	60	50	0	0	50	1.00
51585162--51585300	39	3.5	40	92	2	203	19	24	28	28	1.99
51585162--51585317	39	4.0	39	90	2	190	17	23	29	29	1.97
51591349--51591387	19	2.0	20	90	5	62	38	0	2	58	1.12
51591537--51591596	18	3.4	17	82	11	68	30	1	0	68	0.99
51591537--51591607	17	3.9	18	77	13	67	30	2	0	66	1.06
51598136--51598168	10	3.3	10	88	12	50	39	0	6	54	1.25
51601291--51601374	41	2.0	42	97	2	161	34	19	14	32	1.91
51612293--51612461	47	3.6	46	77	11	159	24	28	17	30	1.97
51612293--51612418	47	2.6	47	85	5	164	23	28	17	30	1.97
51612449--51612519	37	1.9	37	85	5	99	25	30	15	28	1.96
51620095--51620221	46	2.7	46	84	7	150	23	29	18	29	1.97
51620140--51620264	47	2.7	46	82	11	141	24	28	18	29	1.98
51623404--51623728	38	8.4	38	84	2	416	19	30	17	32	1.95
51623404--51623731	77	4.3	76	93	2	514	18	30	17	32	1.95
51623404--51623728	115	2.8	115	85	2	427	19	30	17	32	1.95
51627903--51628105	53	3.8	54	78	1	210	20	23	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51630425--51630575	40	3.8	40	82	6	173	26	21	27	24	2.00
51630461--51630591	40	3.3	40	83	4	167	24	21	26	27	1.99
51635183--51635243	30	2.0	30	83	0	77	31	22	8	37	1.84
51638912--51639012	28	3.5	29	86	6	125	29	27	13	28	1.95
51646723--51646823	28	3.5	29	86	6	125	29	27	13	28	1.95
51654537--51654637	28	3.5	29	86	6	125	29	27	13	28	1.95
51658159--51658191	12	2.6	13	85	9	50	45	0	45	9	1.35
51659924--51660145	40	5.6	39	89	6	274	25	27	21	26	2.00
51668081--51668305	79	2.8	79	85	6	294	25	26	21	26	2.00
51668081--51668305	40	5.7	40	89	5	273	25	26	21	26	2.00
51674969--51675077	55	2.0	55	83	7	141	34	21	24	19	1.96
51674988--51675077	27	3.2	27	85	7	119	32	23	24	20	1.98
51675183--51675275	28	3.3	28	90	3	143	30	7	27	34	1.85
51676341--51676373	12	2.6	13	85	9	50	45	0	45	9	1.35
51681475--51681707	27	8.6	27	86	1	263	39	21	8	30	1.82
51681466--51681707	81	3.0	81	86	4	294	38	21	8	31	1.83
51681475--51681762	27	10.7	27	78	9	241	38	21	8	31	1.83
51681749--51681991	27	9.0	27	86	0	290	34	18	21	24	1.96
51682240--51682291	27	2.0	26	84	3	68	17	26	21	34	1.95
51682507--51682694	6	30.3	6	73	16	143	18	17	14	48	1.81
51682510--51682662	19	7.8	19	74	17	134	18	18	15	47	1.83
51682567--51682628	25	2.5	25	94	0	106	19	19	14	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51682586--51682673	37	2.4	37	86	0	131	18	18	14	48	1.81
51682507--51682668	62	2.7	62	88	4	235	18	17	15	48	1.82
51682529--51682673	31	4.6	31	75	9	134	18	18	15	47	1.83
51682501--51682685	19	9.9	18	73	13	81	18	18	14	48	1.81
51684039--51684120	41	2.0	41	95	0	146	32	35	13	18	1.90
51691528--51691645	40	3.0	40	94	0	209	22	19	28	28	1.98
51695644--51695864	38	5.8	38	88	3	313	30	25	21	21	1.98
51695644--51695851	75	2.8	76	90	4	314	31	25	20	21	1.98
51695644--51695864	113	1.9	114	88	0	336	30	25	21	21	1.98
51702286--51702388	44	2.3	45	84	1	127	30	23	15	31	1.95
51710784--51710845	14	4.2	15	76	17	67	51	1	4	41	1.33
51713711--51713822	28	4.0	28	80	2	109	27	29	14	28	1.95
51714043--51714088	16	2.9	16	84	12	67	17	21	13	47	1.81
51717740--51717799	30	2.0	30	90	0	93	31	25	6	36	1.82
51720295--51720341	23	2.0	23	100	0	94	21	8	25	44	1.80
51724648--51724796	80	1.9	80	81	2	183	22	30	24	22	1.99
51724689--51724796	40	2.7	38	85	8	128	21	29	25	23	1.99
51732520--51732668	80	1.9	80	81	2	183	22	30	24	22	1.99
51732561--51732668	40	2.7	38	85	8	128	21	29	25	23	1.99
51736423--51736482	30	2.0	30	90	0	93	28	23	10	38	1.87
51738841--51738884	21	2.1	21	100	0	88	50	18	11	20	1.77
51739671--51739778	28	3.9	28	82	8	130	25	32	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51739674--51739783	56	2.0	56	85	3	150	24	31	16	27	1.96
51741303--51741335	7	4.7	7	92	0	57	42	42	12	3	1.57
51747121--51747213	40	2.3	40	83	3	125	24	26	23	24	2.00
51747123--51747232	40	2.8	38	78	12	114	24	24	23	27	2.00
51748594--51748801	40	5.2	39	84	1	218	25	25	22	25	2.00
51748594--51748799	80	2.6	81	84	3	247	25	26	22	25	2.00
51772331--51772405	32	2.3	32	84	4	89	32	16	25	26	1.96
51777995--51778259	122	2.2	122	85	2	347	23	23	19	34	1.97
51780174--51780254	28	2.9	28	78	7	92	28	27	13	30	1.94
51780471--51780524	24	2.3	24	87	3	74	11	16	16	55	1.68
51780473--51780531	16	3.7	16	79	4	66	8	15	18	57	1.63
51782511--51782628	41	2.9	41	83	2	139	28	28	20	22	1.98
51782861--51782924	27	2.4	27	86	0	83	26	18	17	37	1.93
51782903--51783455	80	6.9	80	84	4	584	30	9	19	39	1.84
51782877--51783455	27	21.6	27	81	3	609	30	10	19	39	1.85
51782877--51783455	53	10.8	54	83	2	645	30	10	19	39	1.85
51783642--51783705	28	2.3	28	91	0	101	26	37	17	18	1.93
51787901--51788017	41	2.9	41	85	0	153	30	30	17	20	1.96
51787947--51788016	19	3.5	19	64	11	50	31	32	17	18	1.94
51788251--51788339	27	3.3	27	87	3	108	31	14	15	38	1.88
51788291--51788681	27	14.7	27	80	5	316	31	8	19	39	1.83
51788291--51788682	80	4.9	80	84	3	470	31	9	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51788291--51788681	53	7.3	54	81	3	416	31	8	19	39	1.83
51788266--51788681	160	2.6	160	85	1	539	31	9	19	39	1.84
51791333--51791373	18	2.3	18	83	12	57	26	7	2	63	1.33
51797993--51798160	40	4.2	40	79	1	158	22	27	23	26	2.00
51798009--51798158	80	1.9	80	84	5	205	21	27	24	26	1.99
51802780--51802815	18	2.0	18	94	0	63	30	33	25	11	1.90
51804104--51804216	43	2.6	44	83	2	140	28	25	19	26	1.99
51819020--51819110	43	2.1	43	87	4	130	31	21	16	29	1.95
51820879--51821063	40	4.7	39	81	9	205	24	23	27	24	2.00
51820932--51821096	79	2.1	79	83	6	201	26	22	26	24	2.00
51826018--51826249	40	5.8	40	87	5	294	27	28	21	22	1.99
51825992--51826247	80	3.2	80	85	7	308	26	27	21	23	1.99
51826027--51826247	120	1.8	120	87	5	331	27	27	21	23	1.99
51828119--51828240	47	2.6	47	90	2	192	36	12	23	27	1.91
51828219--51828415	55	3.6	54	81	6	229	35	18	24	21	1.95
51832462--51832640	40	4.4	40	82	0	187	23	25	24	26	2.00
51832422--51832640	80	2.7	80	79	2	199	23	25	23	27	2.00
51840432--51840595	40	4.1	40	82	6	188	25	20	28	26	1.99
51840432--51840609	80	2.2	80	83	4	209	25	20	27	25	1.99
51848555--51848718	40	4.1	40	82	6	188	25	20	28	26	1.99
51848555--51848732	80	2.2	80	83	4	209	25	20	27	25	1.99
51853974--51854074	41	2.4	42	91	1	168	24	37	22	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51855727--51855827	28	3.5	29	86	6	125	29	27	13	28	1.95
51863527--51863627	28	3.5	29	86	6	125	29	27	13	28	1.95
51871329--51871428	28	3.4	29	86	6	123	30	27	14	29	1.95
51876105--51876276	46	3.7	46	76	13	172	29	29	18	22	1.98
51877303--51877394	41	2.3	41	94	1	159	22	23	5	47	1.72
51880288--51880341	27	2.0	27	88	0	81	24	12	20	42	1.87
51880294--51880349	27	2.1	27	83	6	69	23	10	17	48	1.79
51880359--51880464	26	4.2	26	75	13	105	25	9	25	39	1.86
51887220--51887329	27	4.1	27	86	0	139	21	11	26	40	1.88
51887794--51887827	18	1.9	18	88	5	52	29	14	14	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427