genome.fa.s11.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  200  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55748660--55748705	24	1.9	24	86	8	67	23	8	23	43	1.82
55748657--55748709	24	2.3	22	79	17	63	22	7	26	43	1.80
55754358--55754408	27	1.9	26	84	4	66	17	27	19	35	1.94
55754425--55754488	33	2.0	32	87	3	92	21	23	18	35	1.95
55760809--55760868	27	2.3	26	82	2	66	23	21	20	35	1.96
55762806--55762889	43	2.0	43	90	0	132	33	26	17	22	1.96
55764061--55764105	23	2.0	22	82	4	54	26	15	2	55	1.52
55769618--55769747	43	3.0	43	76	7	129	34	24	15	25	1.95
55773891--55774150	40	6.6	40	91	2	409	26	30	20	22	1.98
55781946--55782165	40	5.6	40	92	2	347	25	30	20	22	1.99
55784860--55785103	40	6.1	40	89	2	332	23	22	27	26	1.99
55788719--55788823	29	3.6	29	80	2	95	25	32	17	24	1.97
55788778--55788848	29	2.4	29	100	0	142	26	28	15	29	1.96
55795398--55795640	40	6.1	39	91	2	344	23	22	28	25	1.99
55797534--55797606	23	3.1	23	74	16	62	63	0	13	23	1.30
55803731--55803838	48	2.2	48	88	3	153	25	25	13	36	1.93
55806309--55806395	43	2.0	43	88	0	129	39	21	13	25	1.90
55810928--55810957	11	2.7	11	94	0	51	26	23	10	40	1.86
55812712--55812767	27	2.1	27	100	0	112	44	14	10	30	1.79
55818546--55818605	29	2.1	29	90	0	93	30	31	13	25	1.93
55820863--55820907	21	2.1	22	84	12	58	60	0	2	37	1.09
55820866--55820908	16	2.6	16	82	14	52	55	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55821081--55821757	337	2.0	336	99	0	1327	35	19	10	34	1.86
55825462--55825520	31	1.9	31	92	0	100	44	6	10	38	1.65
55826349--55826401	24	2.2	25	86	6	74	41	0	3	54	1.18
55826371--55826444	29	2.5	29	78	10	78	40	1	6	51	1.37
55831503--55831636	24	5.5	25	70	16	77	28	21	19	30	1.98
55831537--55831618	24	3.4	24	77	13	80	26	24	17	31	1.97
55847924--55848025	48	2.1	48	88	0	159	25	14	26	33	1.95
55856458--55856641	40	4.6	39	75	6	138	26	23	27	22	2.00
55856498--55856686	80	2.4	81	77	4	186	23	24	29	22	1.99
55865588--55865710	31	4.0	31	86	6	169	31	24	15	28	1.95
55865726--55865859	42	3.2	42	98	0	259	33	20	14	31	1.93
55866007--55866076	25	2.8	26	86	4	90	27	22	24	25	2.00
55866870--55866934	27	2.4	27	80	10	71	23	24	16	35	1.95
55866988--55867073	27	3.1	27	76	20	88	33	9	13	43	1.77
55867052--55867200	27	5.6	27	84	5	169	27	8	21	42	1.81
55867079--55867233	54	2.9	54	83	4	190	28	11	20	40	1.87
55867232--55867320	27	3.3	27	85	1	108	40	10	23	25	1.86
55873202--55873297	24	4.0	24	76	9	88	25	21	16	36	1.94
55878786--55879001	46	4.6	45	81	6	211	28	18	30	23	1.98
55878786--55879056	94	2.9	93	77	10	243	28	18	30	23	1.98
55878783--55879055	140	2.0	140	82	5	338	27	18	30	23	1.98
55884963--55885031	28	2.5	28	87	0	93	23	14	37	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55885369--55885827	27	17.2	27	78	5	414	39	20	10	30	1.85
55885369--55885803	53	8.1	54	82	2	400	39	19	10	30	1.85
55885369--55885868	80	6.2	81	77	5	424	39	20	10	30	1.85
55885833--55885911	27	2.9	27	86	0	95	39	17	15	27	1.90
55886841--55886897	13	3.3	19	64	31	54	49	17	10	22	1.77
55886831--55886896	33	2.0	33	100	0	132	42	18	12	27	1.85
55888778--55888867	28	3.2	28	88	0	135	21	14	37	26	1.92
55889186--55889644	53	8.6	54	81	3	457	38	19	10	31	1.85
55889185--55889644	80	5.7	81	83	3	504	38	19	10	31	1.86
55889186--55889711	27	19.6	27	80	5	442	38	19	11	30	1.87
55889665--55889728	27	2.4	27	86	0	83	39	21	17	21	1.93
55892877--55892951	29	2.6	29	78	4	80	21	36	21	21	1.96
55892935--55893008	29	2.6	29	95	0	139	27	31	14	27	1.95
55900606--55900773	40	4.2	40	81	4	178	23	27	23	24	2.00
55908549--55908678	40	3.2	40	84	4	174	23	29	24	22	1.99
55911394--55911497	42	2.5	42	90	3	165	20	27	32	19	1.96
55914970--55915038	31	2.2	32	86	2	95	28	18	8	43	1.80
55915501--55915654	60	2.6	59	80	5	159	42	12	18	26	1.85
55922403--55922446	19	2.4	19	85	7	56	50	0	9	40	1.34
55926597--55926643	21	2.2	21	96	0	85	25	21	23	29	1.99
55927173--55927216	19	2.4	19	85	7	56	50	0	9	40	1.34
55934196--55934371	46	3.8	46	81	10	223	19	21	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55934192--55934364	93	1.9	93	96	0	319	20	21	30	27	1.98
55939998--55940094	26	3.7	26	75	17	92	31	17	16	34	1.92
55940061--55940202	54	2.6	54	78	5	133	42	16	14	26	1.86
55940089--55940207	27	4.4	27	81	4	96	44	16	13	25	1.84
55943104--55943171	34	2.0	34	88	0	100	36	0	39	23	1.55
55946307--55946364	29	2.0	30	82	3	73	29	13	10	46	1.77
55951843--55952359	257	2.0	257	100	0	1034	29	13	29	26	1.94
55960593--55960779	40	4.7	40	89	2	261	23	22	28	24	1.99
55960589--55960799	80	2.7	79	89	2	318	23	22	27	26	1.99
55968542--55968670	46	2.8	46	95	0	222	20	20	28	30	1.98
55971456--55971658	40	5.1	40	85	1	255	23	21	28	27	1.99
55971452--55971658	80	2.6	80	89	1	308	24	21	27	27	1.99
55974093--55974125	16	1.9	18	88	11	52	33	9	12	45	1.73
55991681--55991804	61	2.0	61	100	0	248	40	16	30	12	1.86
56006254--56006284	2	15.5	2	93	0	53	51	0	3	45	1.17
56011304--56011389	45	1.9	45	95	0	154	36	26	13	23	1.93
56035346--56035413	33	2.1	33	100	0	136	22	8	11	57	1.61
56037270--56037393	48	2.6	49	85	3	162	25	30	20	24	1.98
56037265--56037404	49	2.9	48	83	3	165	24	30	20	25	1.99
56040045--56040071	6	4.5	6	100	0	54	48	0	18	33	1.49
56044643--56044684	21	2.0	21	100	0	84	28	23	9	38	1.86
56046551--56046822	46	5.8	46	78	11	227	23	30	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56046554--56046870	94	3.4	92	75	10	286	23	29	17	29	1.98
56046554--56046864	47	6.6	47	72	14	180	23	28	17	29	1.97
56047204--56047281	30	2.6	30	97	0	147	30	26	10	32	1.90
56050431--56050466	18	2.0	18	88	0	54	41	16	11	30	1.83
56065860--56066114	40	6.4	40	76	6	230	35	15	27	21	1.93
56065862--56066114	80	3.2	79	77	7	269	35	15	27	21	1.93
56065864--56066114	120	2.1	118	85	4	349	35	15	27	21	1.94
56066132--56066169	2	19.0	2	100	0	76	50	0	0	50	1.00
56068697--56068778	43	1.9	43	82	5	103	25	14	25	34	1.94
56073659--56073821	24	6.7	24	75	3	155	23	12	30	33	1.92
56073661--56073821	48	3.3	49	80	4	182	24	12	30	32	1.92
56075485--56075548	31	2.1	31	90	0	101	25	23	15	35	1.94
56075741--56075884	24	6.0	24	88	8	204	26	22	21	29	1.99
56075933--56075999	20	3.3	20	85	0	89	29	22	11	35	1.90
56076036--56076083	25	1.9	25	86	0	69	25	16	25	33	1.96
56077244--56077321	27	2.9	27	79	11	88	21	20	21	35	1.96
56077449--56077577	27	4.8	27	85	2	179	31	6	20	41	1.78
56077423--56077576	81	1.9	81	86	2	220	31	7	20	41	1.79
56077339--56077645	27	11.3	27	78	6	140	33	8	19	37	1.82
56077541--56077834	81	3.6	80	75	7	218	37	8	22	31	1.85
56077568--56077780	27	7.9	27	86	5	243	39	8	23	28	1.84
56077570--56077773	54	3.8	54	86	3	286	40	8	22	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56077786--56077875	27	3.3	27	85	3	119	32	10	17	40	1.83
56077769--56077875	54	2.0	54	81	7	128	30	10	20	38	1.86
56077786--56077890	27	3.9	27	79	9	90	34	9	17	39	1.82
56084420--56084581	24	6.6	24	73	6	146	24	13	30	32	1.93
56084428--56084567	74	1.9	75	82	7	178	24	12	30	32	1.92
56087682--56087722	21	2.0	21	95	0	73	31	26	0	41	1.56
56092957--56093200	48	5.1	48	94	1	420	34	6	28	31	1.82
56093342--56093441	37	2.7	37	93	0	173	24	20	33	23	1.97
56106622--56106796	48	3.6	49	82	10	200	22	31	17	28	1.97
56106575--56106796	48	4.6	48	78	10	195	23	29	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427