genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  124  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32703424--32703462	20	2.0	19	85	5	51	58	17	7	15	1.59
32711300--32711343	19	2.4	18	85	7	54	40	9	0	50	1.34
32714854--32714905	24	2.2	24	96	0	95	32	3	42	21	1.71
32716305--32716399	28	3.4	27	79	7	93	18	24	22	34	1.96
32716334--32716416	27	3.1	26	85	10	105	15	22	21	39	1.91
32721699--32721870	93	1.8	93	94	0	308	27	29	20	21	1.98
32721691--32721866	46	3.8	46	81	10	214	28	28	20	21	1.98
32724252--32724301	15	3.4	15	86	2	66	60	12	18	10	1.59
32727227--32727398	93	1.8	93	94	0	308	27	30	21	20	1.98
32727219--32727394	46	3.8	46	81	10	214	28	29	21	21	1.98
32729721--32729747	2	13.5	2	100	0	54	48	0	0	51	1.00
32730397--32730556	24	6.7	23	73	6	106	22	14	30	32	1.94
32738301--32738350	24	2.1	24	84	0	64	26	10	32	32	1.89
32739747--32740045	27	11.3	27	85	1	347	35	20	20	24	1.96
32744197--32744310	50	2.3	50	92	0	183	26	11	17	44	1.82
32745382--32745424	20	2.2	20	100	0	86	46	0	9	44	1.35
32745389--32745433	20	2.2	20	84	7	56	48	2	6	42	1.41
32745739--32745774	2	18.0	2	94	0	63	50	0	2	47	1.15
32746543--32746648	20	5.3	18	77	13	77	33	21	33	12	1.91
32748387--32748416	11	2.7	11	100	0	60	33	10	20	36	1.86
32752682--32752725	23	1.9	23	90	0	70	22	22	15	38	1.92
32757355--32757973	49	12.3	49	84	9	666	31	7	29	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32757497--32757531	16	2.2	16	100	0	70	37	0	31	31	1.58
32757448--32757589	65	2.2	65	97	2	266	32	5	30	31	1.81
32757355--32757675	163	2.0	163	94	0	570	31	7	30	30	1.85
32757399--32757626	114	2.0	114	97	0	429	32	7	30	30	1.84
32757513--32757973	98	4.7	98	95	0	823	32	8	29	30	1.86
32757606--32757688	27	3.3	27	60	16	68	31	4	30	33	1.79
32757513--32757969	147	3.1	147	96	0	842	31	8	29	30	1.86
32765531--32765753	40	5.6	40	86	4	297	24	23	26	25	2.00
32773607--32773828	40	5.6	40	83	5	270	23	23	26	26	2.00
32778011--32778152	40	3.5	40	83	1	124	27	23	26	22	1.99
32778050--32778178	40	3.2	39	84	6	152	24	22	27	25	2.00
32782180--32782309	40	3.3	39	83	4	163	23	28	25	23	1.99
32786264--32786332	35	2.0	35	100	0	138	26	11	21	40	1.87
32789523--32789549	14	1.9	14	100	0	54	37	7	18	37	1.79
32790757--32790805	25	2.0	25	84	8	64	69	4	6	20	1.27
32792634--32792673	18	2.2	18	95	0	71	35	12	5	47	1.63
32796536--32796702	24	7.0	24	88	3	221	26	20	22	29	1.98
32796535--32796702	71	2.3	71	87	4	230	26	20	22	30	1.98
32796756--32796812	20	2.8	20	91	0	96	31	21	12	35	1.90
32796855--32796902	25	1.9	25	86	0	69	25	16	25	33	1.96
32798062--32798126	27	2.4	27	84	5	87	20	24	20	35	1.96
32798180--32798235	27	2.1	26	83	9	69	39	12	10	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32798188--32798830	27	23.8	27	83	5	198	34	7	21	35	1.83
32798279--32798571	81	3.6	80	79	7	331	39	7	22	29	1.82
32798567--32798825	81	3.2	81	86	3	310	29	7	21	41	1.80
32801239--32801287	23	2.1	23	96	0	89	26	34	20	18	1.95
32802153--32802213	30	2.0	30	83	0	77	31	22	8	37	1.84
32814894--32814925	15	2.1	16	88	11	50	37	0	12	50	1.41
32817616--32817737	29	4.2	28	90	0	145	23	27	15	32	1.95
32817607--32817738	58	2.3	58	85	0	183	23	30	15	30	1.96
32825593--32825714	29	4.2	28	90	0	145	23	27	15	32	1.95
32825584--32825715	58	2.3	58	85	0	183	23	30	15	30	1.96
32828722--32828788	27	2.5	26	88	7	98	41	17	17	22	1.90
32828925--32829010	27	3.2	26	79	7	75	22	19	19	38	1.94
32830733--32830891	33	4.7	33	68	9	104	27	25	15	32	1.95
32830717--32830968	103	2.5	102	82	1	326	28	24	15	31	1.95
32837235--32837647	48	8.6	48	86	0	583	27	25	19	26	1.99
32837635--32837719	37	2.3	37	83	0	98	29	23	17	29	1.97
32848596--32848634	21	1.9	20	89	5	60	33	0	20	46	1.51
32852799--32852867	36	1.9	35	97	2	129	20	27	20	31	1.97
32855506--32855669	40	4.1	40	82	4	179	25	28	21	25	1.99
32855492--32855669	80	2.2	80	82	3	207	24	27	21	25	2.00
32863599--32863775	79	2.2	80	82	4	207	24	27	22	25	2.00
32863613--32863775	40	4.1	40	82	6	188	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32875093--32875215	61	2.0	60	98	1	237	13	20	6	60	1.55
32876825--32877771	271	3.6	259	83	6	1035	29	18	27	24	1.98
32880034--32880070	2	18.5	2	100	0	74	51	0	0	48	1.00
32882452--32882499	24	2.0	24	100	0	96	41	12	12	33	1.80
32882452--32882490	14	3.1	14	72	27	50	41	12	15	30	1.85
32883448--32883504	30	1.9	30	92	0	96	19	28	29	22	1.98
32887785--32887823	9	4.4	9	87	6	53	58	0	7	33	1.26
32892312--32892448	46	3.0	46	80	4	168	30	17	24	27	1.97
32898600--32898704	29	3.5	29	86	3	138	24	22	14	38	1.92
32905612--32905754	29	4.9	29	93	2	241	24	23	13	38	1.91
32905612--32905754	59	2.4	58	92	2	241	24	23	13	38	1.91
32914455--32914618	71	2.3	71	97	0	310	34	18	28	18	1.95
32921992--32922147	70	2.2	71	97	1	296	34	17	28	19	1.95
32921992--32922175	71	2.7	68	89	9	236	33	19	28	19	1.95
32929247--32929408	71	2.3	69	97	2	306	34	17	28	19	1.95
32931546--32931647	30	3.5	30	80	9	111	30	14	26	28	1.95
32939393--32939494	28	3.5	30	80	6	111	28	15	27	28	1.96
32939422--32939497	29	2.7	28	76	13	75	28	15	26	28	1.96
32943538--32943577	22	1.9	20	85	10	53	52	5	0	42	1.23
32944253--32944312	28	2.1	29	81	9	70	30	20	3	46	1.66
32944435--32944539	52	2.0	52	85	7	142	40	2	6	50	1.43
32945921--32945960	19	2.1	19	86	9	55	62	10	2	25	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32951048--32951142	27	3.5	26	87	8	136	40	22	23	14	1.91
32951048--32951160	55	2.1	54	83	5	138	38	22	23	16	1.93
32951048--32951160	27	4.1	27	85	6	104	38	22	23	16	1.93
32952582--32952658	24	3.2	24	88	0	118	19	41	3	35	1.70
32954127--32954163	19	1.9	19	94	0	65	35	16	8	40	1.78
32959723--32959800	39	2.0	39	90	2	122	33	8	28	29	1.87
32960674--32960803	50	2.6	49	89	3	181	29	28	17	24	1.97
32960674--32960860	101	1.9	99	85	2	257	28	28	18	24	1.98
32963259--32963357	28	3.5	29	80	6	105	30	26	15	28	1.96
32966421--32966528	26	4.2	26	93	0	189	36	24	7	32	1.83
32973465--32973571	26	4.2	26	91	2	180	36	23	7	32	1.83
32973465--32973571	51	2.1	52	94	1	189	36	23	7	32	1.83
32975924--32975959	15	2.4	15	95	0	63	13	19	47	19	1.83
32976028--32976070	21	2.0	22	82	13	54	25	6	30	37	1.82
33000159--33000343	40	4.7	40	89	2	257	24	22	27	25	2.00
33024758--33024858	28	3.5	28	86	6	114	29	13	26	29	1.94
33027783--33027835	27	1.9	28	84	3	72	35	1	28	33	1.68
33030162--33030440	48	5.8	48	90	0	425	26	18	25	29	1.98
33030162--33030440	95	2.9	96	89	1	425	26	18	25	29	1.98
33035180--33035249	27	2.5	28	86	2	97	32	25	14	27	1.94
33035257--33035363	42	2.5	42	96	0	196	22	33	14	28	1.94
33045463--33045601	40	3.5	40	84	4	167	24	30	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33045470--33045654	40	4.6	39	75	11	124	25	29	21	23	1.99
33053486--33053610	40	3.2	40	87	5	168	24	29	20	24	1.99
33059270--33059324	27	2.0	27	100	0	110	41	21	10	25	1.86
33067525--33067578	28	1.9	28	88	0	81	31	29	12	25	1.93
33067585--33067701	40	2.9	40	92	0	189	31	26	17	23	1.97
33067832--33067864	17	2.1	16	88	11	50	30	0	0	69	0.88
33067895--33067953	21	2.8	22	80	7	61	22	0	8	69	1.15
33070294--33070489	53	3.6	55	78	6	188	20	25	17	37	1.94
33075054--33075229	91	1.9	90	80	3	201	36	15	20	27	1.93
33075323--33075479	68	2.3	68	73	12	151	42	9	14	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427