genome.fa.s11.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  179  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49549282--49549452	91	1.9	93	92	2	292	27	30	21	21	1.98
49551822--49551909	29	3.0	29	80	8	97	56	15	15	11	1.66
49551822--49551900	15	5.4	15	77	10	83	58	13	16	11	1.64
49551833--49551909	15	5.2	15	75	9	77	55	15	15	12	1.69
49554790--49554963	46	3.8	45	76	8	181	28	29	20	20	1.98
49554797--49554968	92	1.9	93	92	1	292	27	30	20	20	1.98
49567019--49567140	43	2.9	42	83	7	165	31	24	15	27	1.96
49569529--49569569	21	2.0	21	90	9	66	39	2	24	34	1.69
49570274--49570308	2	18.0	2	94	5	63	48	0	0	51	1.00
49570861--49571019	39	4.1	39	89	4	205	27	19	27	25	1.99
49573064--49573227	71	2.3	71	100	0	328	18	28	17	35	1.94
49573064--49573261	71	2.8	70	91	3	258	20	28	17	33	1.95
49590951--49591007	28	2.0	29	82	3	71	31	24	3	40	1.72
49593862--49594010	42	3.5	42	82	6	178	30	23	16	29	1.96
49595528--49595570	14	3.1	14	83	16	54	48	2	4	44	1.36
49598258--49598370	41	2.7	41	93	4	192	50	1	21	26	1.58
49599170--49599204	10	3.6	10	88	3	54	25	2	0	71	1.00
49599174--49599216	21	2.0	21	81	0	50	32	4	0	62	1.15
49599665--49599703	20	2.0	20	89	0	60	48	0	15	35	1.45
49601222--49601352	45	2.9	45	88	3	183	25	10	25	38	1.88
49601564--49601592	14	2.0	15	93	6	51	27	0	20	51	1.47
49601904--49601958	27	2.0	27	92	0	92	40	9	29	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49602637--49602808	43	4.0	43	76	13	167	23	18	27	30	1.97
49602650--49602808	85	1.9	86	83	9	209	24	18	28	28	1.98
49605702--49605765	14	4.6	14	76	7	67	26	29	3	40	1.71
49605702--49605765	28	2.3	28	86	5	85	26	29	3	40	1.71
49605711--49605766	14	4.0	14	83	4	69	23	28	5	42	1.76
49607330--49607378	17	2.8	18	74	22	50	24	18	22	34	1.96
49608201--49608367	40	4.2	38	77	9	149	25	20	27	25	1.99
49616303--49616364	31	2.0	31	93	0	106	33	20	11	33	1.89
49618403--49618498	24	3.9	24	79	8	88	37	17	19	25	1.94
49627526--49627597	31	2.2	33	85	7	94	52	23	2	20	1.59
49628522--49628582	30	2.0	30	93	0	104	24	8	14	52	1.69
49629064--49629503	125	3.5	125	89	1	659	37	17	17	27	1.93
49633035--49633077	18	2.4	18	88	0	59	44	9	25	20	1.81
49633861--49633902	20	2.2	19	83	12	50	52	4	2	40	1.35
49634765--49634812	21	2.3	20	80	16	53	52	2	18	27	1.57
49634771--49634834	21	2.9	21	84	11	67	46	1	25	26	1.61
49634780--49634840	11	5.7	10	83	9	68	44	0	26	29	1.55
49641216--49641249	9	3.8	9	92	0	59	50	8	20	20	1.75
49642284--49642330	24	2.0	24	87	8	69	44	6	23	25	1.77
49642898--49642981	19	4.6	19	66	16	61	27	2	3	66	1.20
49642915--49642990	19	4.2	19	69	19	63	31	1	3	63	1.21
49642881--49642990	53	2.1	53	96	0	202	30	1	4	62	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49644435--49644506	30	2.4	30	88	0	99	29	38	19	12	1.88
49644455--49644524	30	2.3	30	87	0	104	35	34	12	17	1.88
49644455--49644532	30	2.6	30	82	8	95	34	34	14	16	1.89
49649290--49649323	16	2.3	14	90	10	50	5	11	0	82	0.83
49653100--49653126	10	2.7	10	100	0	54	18	11	29	40	1.85
49656550--49656921	126	3.0	126	86	2	507	29	14	16	40	1.88
49656979--49657058	30	2.7	30	86	5	119	41	17	2	38	1.63
49656980--49657170	34	6.4	29	70	20	128	40	19	1	38	1.59
49657071--49657123	22	2.4	22	87	0	70	35	22	1	39	1.65
49657007--49657164	86	1.8	86	91	0	262	41	19	1	37	1.60
49658033--49658089	27	2.1	28	83	9	73	68	0	0	31	0.90
49658040--49658091	18	2.8	18	75	11	52	65	0	0	34	0.93
49661823--49661860	8	4.6	8	96	3	67	31	0	0	68	0.90
49669096--49669206	27	4.1	27	83	5	136	39	21	23	15	1.91
49669100--49669205	54	2.0	53	88	1	158	40	20	22	16	1.91
49672294--49672452	29	5.5	29	82	5	171	25	16	31	25	1.97
49672290--49672454	57	2.9	58	79	6	176	26	16	31	25	1.96
49680357--49680515	29	5.5	29	82	5	171	25	16	31	25	1.97
49680353--49680517	57	2.9	58	79	6	176	26	16	31	25	1.96
49681969--49682045	24	3.2	24	94	0	127	20	42	3	32	1.70
49682052--49682106	25	2.2	25	100	0	110	14	36	7	41	1.74
49682607--49682666	27	2.3	26	85	2	75	35	20	23	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49683118--49683367	81	3.1	81	86	0	338	25	20	17	36	1.94
49683119--49683360	27	9.0	27	87	1	297	24	21	17	36	1.94
49683135--49683394	81	3.2	79	82	6	306	25	18	18	37	1.93
49683351--49683627	27	10.3	27	79	5	251	31	11	20	36	1.88
49683214--49683627	27	15.4	27	78	7	201	29	14	19	36	1.91
49683576--49683643	27	2.5	27	82	0	73	27	10	25	36	1.88
49683363--49683652	80	3.6	79	72	10	239	31	11	20	37	1.87
49691749--49691773	12	2.1	12	100	0	50	28	24	24	24	2.00
49694841--49694994	40	3.8	40	80	5	114	22	25	24	27	2.00
49694867--49695045	40	4.4	40	82	0	187	22	26	23	27	2.00
49702454--49702487	17	2.0	17	88	11	52	20	29	35	14	1.93
49702658--49702890	27	8.6	27	82	2	245	39	21	9	29	1.84
49702846--49702944	27	3.7	27	71	5	74	38	22	8	31	1.83
49702929--49703317	27	14.3	27	89	4	494	32	21	22	24	1.98
49702940--49703033	33	3.0	33	79	14	94	30	25	19	24	1.98
49703458--49703488	16	1.9	16	93	0	53	29	22	19	29	1.98
49703744--49703808	22	3.0	22	84	8	87	20	21	23	35	1.96
49703967--49704068	27	3.8	26	81	5	105	19	24	21	34	1.96
49704205--49704350	6	23.3	6	69	20	77	19	17	15	48	1.81
49704234--49704336	25	3.8	26	80	13	93	18	17	15	48	1.81
49704205--49704308	32	3.3	32	93	2	183	19	15	15	50	1.79
49706827--49706878	27	2.0	26	84	3	68	34	21	26	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49707521--49707590	27	2.6	27	90	0	104	24	18	21	35	1.95
49707546--49707618	27	2.7	27	80	6	76	27	10	21	39	1.87
49707602--49707680	27	2.9	27	96	0	140	22	7	25	44	1.79
49707808--49707845	17	2.2	18	90	4	60	15	31	28	23	1.96
49713601--49713848	40	6.2	40	90	1	356	27	28	20	22	1.99
49715603--49715751	80	1.9	80	81	2	183	22	30	24	22	1.99
49715644--49715751	40	2.7	38	85	8	128	21	29	25	23	1.99
49723725--49723873	80	1.9	80	81	2	183	22	30	24	22	1.99
49723766--49723873	40	2.7	38	85	8	128	21	29	25	23	1.99
49727029--49727101	29	2.5	29	86	4	94	27	15	31	26	1.95
49737840--49737902	31	2.0	31	93	0	108	19	34	12	33	1.89
49739221--49739258	19	2.0	20	85	15	53	39	23	0	36	1.55
49739488--49739657	93	1.8	93	89	0	268	30	27	19	22	1.98
49739482--49739651	46	3.7	46	75	13	159	30	27	18	23	1.98
49740077--49740136	30	2.0	30	86	0	84	33	25	5	36	1.78
49745643--49745738	44	2.2	43	85	7	115	25	18	26	30	1.98
49748624--49748702	31	2.5	31	93	0	131	27	22	18	30	1.98
49748726--49748817	42	2.2	42	90	0	139	34	20	15	29	1.93
49748962--49749109	25	5.8	26	87	0	194	28	24	22	24	2.00
49749912--49749994	27	3.1	26	87	5	112	21	25	21	31	1.98
49750055--49750106	27	1.9	27	88	7	79	34	11	11	42	1.77
49750104--49750335	27	8.6	27	75	8	132	30	9	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49750289--49750445	54	2.9	54	87	0	179	38	8	21	31	1.84
49750317--49750445	27	4.8	27	92	0	186	40	8	21	29	1.83
49752825--49752897	3	24.3	3	100	0	146	34	0	0	65	0.93
49754280--49754325	9	4.7	10	82	10	51	34	8	19	36	1.83
49754381--49754478	26	3.8	26	87	1	135	25	22	21	30	1.99
49756406--49756535	47	2.8	47	84	2	163	33	26	16	23	1.96
49761658--49761699	22	1.9	22	85	9	59	50	16	2	30	1.58
49763723--49763754	2	16.0	2	100	0	64	50	0	0	50	1.00
49767350--49767432	31	2.7	31	94	3	143	27	26	15	30	1.96
49767567--49767624	29	2.1	28	87	6	82	27	0	32	39	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427