Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  374  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108836334--108836380
11
4.4
11
78
10
53
51
2
2
44
1.25
108839162--108839234
32
2.3
32
83
9
87
42
9
6
41
1.64
108839886--108839933
16
2.9
16
75
3
51
39
0
0
60
0.97
108840009--108840047
10
3.5
11
89
6
53
28
2
5
64
1.28
108840125--108840163
19
2.0
20
90
5
62
20
0
7
71
1.10
108840144--108840189
25
1.9
23
86
8
65
28
0
8
63
1.24
108842935--108843212
148
1.9
149
92
3
472
44
7
6
41
1.59
108846005--108846032
2
14.0
2
100
0
56
50
0
0
50
1.00
108847549--108847656
35
3.1
35
82
0
117
34
23
19
23
1.97
108847727--108847809
37
2.3
36
93
2
139
31
30
13
25
1.93
108854967--108855008
22
1.9
22
95
0
75
26
11
2
59
1.45
108856630--108856670
21
2.0
21
85
9
57
58
24
0
17
1.38
108858847--108859007
41
3.9
41
85
1
155
40
24
16
18
1.90
108858855--108859009
82
1.9
82
84
0
211
41
25
16
17
1.89
108861603--108861665
31
2.1
31
87
3
92
25
1
12
60
1.42
108861951--108861987
2
19.0
2
84
15
51
48
2
0
48
1.15
108867814--108867848
18
1.9
18
94
0
61
20
8
8
62
1.49
108867910--108868003
9
10.3
9
67
17
52
71
2
4
22
1.14
108867951--108868002
17
2.9
18
75
13
54
71
1
5
21
1.17
108867913--108867971
29
2.1
27
82
14
68
72
1
3
22
1.08
108871051--108871088
18
2.2
18
85
4
51
34
21
5
39
1.76
108871174--108871335
10
17.4
9
71
21
70
58
1
3
36
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108871254--108871330
28
2.8
27
75
16
77
61
1
2
35
1.18
108871622--108871677
19
2.9
20
86
5
71
25
0
5
69
1.09
108871623--108871713
19
4.7
18
70
12
56
28
1
3
67
1.14
108872297--108872466
19
8.8
19
67
15
73
58
1
4
35
1.29
108872340--108872472
39
3.5
37
78
12
130
57
1
5
35
1.30
108872297--108872465
20
8.8
20
65
23
55
57
1
4
35
1.30
108873008--108873040
17
1.9
17
88
11
50
27
0
3
69
1.03
108873017--108873079
30
2.1
30
93
0
108
28
3
12
55
1.52
108873550--108873587
15
2.4
17
82
13
53
31
0
2
65
1.06
108873552--108873616
8
7.5
8
74
17
51
30
0
4
64
1.14
108873565--108873614
19
2.7
19
85
11
61
30
0
4
66
1.10
108873464--108873733
9
29.1
9
67
18
69
32
3
2
61
1.26
108873568--108873642
29
2.6
28
79
10
80
30
0
6
62
1.21
108873627--108873678
17
2.9
18
82
5
61
36
1
0
61
1.07
108873630--108873724
28
3.4
27
75
16
88
29
5
1
64
1.22
108874897--108875039
44
3.3
42
76
8
135
35
13
20
30
1.92
108875122--108875195
38
1.9
38
94
0
130
39
13
9
37
1.77
108875172--108875216
21
2.1
21
92
8
74
40
15
6
37
1.74
108876824--108876889
30
2.2
30
86
0
96
37
34
6
21
1.78
108876768--108876927
16
10.3
16
72
6
114
33
29
11
25
1.91
108877487--108877529
22
1.9
23
95
4
79
16
9
0
74
1.06
108877573--108877602
10
3.0
10
95
0
51
80
3
0
16
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108878188--108878214
3
9.0
3
100
0
54
33
0
0
66
0.92
108878202--108878261
31
1.9
31
83
12
79
31
0
8
60
1.27
108878208--108878263
27
2.2
25
83
6
67
32
0
8
58
1.29
108878344--108878526
3
61.0
3
73
20
118
31
2
3
62
1.25
108878344--108878554
18
12.0
18
71
22
93
31
2
4
61
1.30
108878542--108878572
12
2.6
12
94
0
53
38
0
6
54
1.26
108878177--108878630
156
3.0
149
83
9
549
31
4
5
59
1.40
108884291--108884376
15
5.8
15
77
11
61
27
23
19
29
1.98
108884335--108884364
14
2.2
14
94
5
53
30
20
13
36
1.90
108884459--108884484
13
2.0
13
100
0
52
38
23
15
23
1.92
108885303--108885371
9
7.6
9
71
14
52
68
0
4
27
1.09
108885303--108885371
17
3.9
17
70
9
57
68
0
4
27
1.09
108885387--108885460
37
2.0
37
100
0
148
29
18
27
24
1.98
108885495--108885564
10
7.1
10
73
14
56
52
0
4
42
1.20
108885496--108885565
29
2.4
29
83
9
81
54
0
4
41
1.20
108885729--108885754
11
2.4
11
100
0
52
50
0
0
50
1.00
108888138--108888168
7
4.4
7
91
0
53
70
0
0
29
0.87
108892515--108892604
41
2.2
42
87
4
137
52
11
3
33
1.53
108897408--108897485
26
3.0
26
86
0
111
29
34
12
23
1.92
108898554--108898578
13
1.9
13
100
0
50
56
0
4
40
1.18
108902906--108902930
12
2.1
12
100
0
50
76
0
8
16
1.02
108904679--108904927
51
5.1
51
69
16
165
32
16
12
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108904584--108905373
44
17.2
45
71
13
350
30
18
15
35
1.92
108904582--108905419
96
9.1
96
76
9
533
31
18
15
35
1.92
108904609--108905273
138
4.8
138
72
11
371
31
18
15
34
1.92
108904584--108905140
182
3.0
183
77
8
408
31
18
14
34
1.92
108905073--108905368
45
6.5
44
74
11
186
28
17
17
36
1.93
108905378--108905704
94
3.5
93
86
2
397
28
21
18
32
1.96
108905545--108905693
44
3.3
43
69
18
138
24
22
20
32
1.97
108905378--108905754
94
4.0
93
85
2
364
29
21
17
31
1.96
108910709--108910733
12
2.1
12
100
0
50
16
0
0
84
0.63
108911337--108911404
22
3.0
22
83
10
93
42
19
22
16
1.89
108912554--108912642
7
13.3
7
73
17
64
49
1
1
48
1.16
108912563--108912605
20
2.2
20
86
0
59
51
0
2
46
1.13
108918733--108918800
22
3.0
22
83
10
93
42
19
22
16
1.89
108919975--108920100
39
3.2
39
88
0
180
23
19
28
28
1.98
108919975--108920138
78
2.1
78
79
5
172
22
20
28
28
1.98
108922009--108922105
7
14.4
7
73
16
71
48
1
1
49
1.14
108922018--108922060
20
2.2
20
86
0
59
51
0
2
46
1.13
108930308--108930333
12
2.2
12
100
0
52
76
7
0
15
0.99
108937751--108937815
27
2.4
27
82
2
78
40
21
21
16
1.92
108937951--108938071
27
4.5
26
87
3
143
25
19
18
37
1.94
108939425--108939492
32
2.2
32
94
5
122
66
8
19
5
1.40
108947927--108948093
56
3.0
55
79
5
183
25
14
6
53
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108947884--108948087
28
7.2
28
77
7
164
22
14
7
55
1.63
108950214--108950240
5
5.4
5
100
0
54
0
18
0
81
0.69
108953870--108953903
10
3.3
10
95
4
59
64
0
0
35
0.94
108953891--108953967
29
2.6
28
76
8
82
45
0
3
50
1.20
108955618--108955872
62
4.3
57
77
13
191
37
27
5
29
1.79
108955728--108955834
31
3.5
31
76
14
130
35
28
4
30
1.78
108955699--108955871
62
2.8
59
87
8
192
36
29
5
28
1.79
108968447--108968508
25
2.4
25
84
10
72
53
3
6
37
1.43
108968455--108968508
25
2.1
27
86
6
76
53
3
5
37
1.42
108982900--108982982
31
2.6
31
80
3
85
59
19
6
15
1.57
108983214--108983286
21
3.5
21
79
7
94
1
46
21
30
1.60
108983734--108983762
14
2.1
14
93
6
51
58
6
0
34
1.25
108988880--108988935
9
6.2
9
73
8
51
32
0
21
46
1.52
108988880--108988951
36
2.0
36
94
0
126
34
0
18
47
1.49
108988940--108988964
13
1.9
13
100
0
50
44
0
8
48
1.32
108988953--108989072
52
2.3
52
98
0
231
35
0
15
49
1.50
108988953--108989095
27
5.4
27
76
10
145
35
0
13
49
1.48
108991785--108991825
21
2.0
21
85
0
55
58
7
4
29
1.46
108993416--108993452
13
2.7
14
91
8
67
51
5
0
43
1.24
108993559--108993777
7
31.0
7
68
11
81
42
36
0
20
1.58
108993610--108993725
42
2.8
41
78
12
103
39
37
1
20
1.63
108993886--108993926
21
2.0
21
90
0
64
48
24
0
26
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108994025--108994061
7
5.1
7
90
6
56
32
43
0
24
1.55
108994091--108994157
36
1.9
35
81
6
82
38
34
1
25
1.65
108994980--108995019
18
2.2
18
90
0
62
25
2
2
70
1.13
108995291--108995336
24
1.9
24
82
8
58
23
6
2
67
1.25
108995368--108995457
27
3.3
27
70
14
78
33
8
5
52
1.56
108995561--108995636
3
25.3
3
97
0
143
32
1
0
65
1.01
108995704--108995755
23
2.3
23
82
0
59
28
7
5
57
1.50
108996034--108996517
260
1.9
261
89
3
760
29
13
18
38
1.89
108997964--108998051
21
4.2
21
68
16
65
18
23
14
43
1.87
108997942--108998042
42
2.4
42
81
4
107
20
23
14
40
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427