Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  330  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96191386--96191513
47
2.7
46
82
8
161
24
14
27
33
1.94
96203279--96203315
16
2.3
16
95
0
65
40
10
37
10
1.75
96207935--96208009
36
2.1
36
100
0
150
34
14
21
29
1.93
96219500--96219622
43
2.9
42
77
10
108
25
19
24
30
1.98
96227388--96227438
23
2.2
24
85
3
68
33
21
29
15
1.94
96233398--96233643
27
9.1
26
83
6
208
39
19
9
32
1.83
96233398--96233643
54
4.6
54
79
7
257
39
19
9
32
1.83
96233398--96233643
80
3.0
81
80
6
257
39
19
9
32
1.83
96233661--96233738
27
2.9
27
74
11
79
37
20
20
21
1.95
96234418--96234484
10
6.6
10
83
6
82
37
10
19
32
1.86
96234418--96234484
21
3.3
21
89
4
93
37
10
19
32
1.86
96234424--96234496
32
2.3
31
83
2
83
36
12
17
32
1.87
96238751--96238804
14
3.7
15
87
7
85
12
16
9
61
1.56
96241196--96241320
46
2.8
44
81
11
157
22
20
28
28
1.99
96245029--96245212
40
4.6
40
78
4
147
22
24
29
23
1.99
96253120--96253222
40
2.6
40
85
0
125
26
24
29
20
1.99
96255330--96255366
11
3.8
10
86
13
51
16
0
5
78
0.93
96255486--96255526
12
3.5
12
80
6
57
26
7
2
63
1.33
96256241--96256284
11
3.6
12
80
14
54
81
0
18
0
0.68
96258471--96258510
3
13.3
3
89
0
62
65
2
0
32
1.06
96259281--96259339
21
2.8
21
97
0
109
33
38
6
20
1.79
96261931--96261986
28
2.0
28
92
0
94
26
8
12
51
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96265353--96265399
11
4.1
11
81
10
58
36
0
2
61
1.08
96268004--96268184
46
3.9
46
81
9
233
20
21
29
27
1.98
96268006--96268176
93
1.8
93
96
0
315
20
22
29
27
1.98
96271136--96271204
15
4.6
15
83
0
84
11
17
13
57
1.64
96271127--96271214
30
3.0
30
81
8
99
10
17
15
56
1.66
96273586--96273766
46
3.9
46
81
9
233
20
21
29
27
1.98
96273588--96273758
93
1.8
93
96
0
315
20
22
29
27
1.98
96277789--96277829
20
2.0
22
85
9
59
39
34
4
21
1.75
96281213--96281355
33
4.3
33
72
7
117
28
25
15
30
1.96
96281118--96281357
101
2.4
101
92
0
381
29
25
15
30
1.95
96282878--96282964
48
1.9
46
81
11
108
33
20
14
31
1.93
96286790--96286965
46
3.8
46
78
12
207
20
20
29
29
1.98
96286787--96286958
93
1.8
93
94
0
308
20
20
29
28
1.98
96287281--96287333
19
3.2
19
61
38
50
33
15
13
37
1.86
96287278--96287337
30
2.0
30
100
0
120
33
16
13
36
1.88
96294364--96294539
46
3.8
46
79
12
216
20
21
29
28
1.98
96294361--96294532
93
1.8
93
96
0
317
20
21
29
27
1.98
96299712--96299741
15
2.0
15
93
0
51
40
10
20
30
1.85
96300138--96300339
58
3.5
58
85
4
187
28
24
17
28
1.98
96300197--96300339
58
2.5
58
96
1
270
27
25
18
28
1.98
96308001--96308171
27
6.3
27
86
2
218
29
25
7
38
1.82
96308001--96308171
54
3.2
53
88
1
243
29
25
7
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96308203--96308382
27
6.7
27
83
7
222
40
20
7
31
1.80
96308184--96308420
54
4.4
54
80
5
176
41
18
10
29
1.84
96308401--96308474
27
2.7
27
76
12
71
37
20
20
21
1.94
96309169--96309235
20
3.4
19
89
4
89
37
10
20
31
1.87
96309285--96309420
26
5.3
26
88
3
190
29
20
21
28
1.98
96310738--96310917
46
3.9
46
77
11
192
21
20
28
28
1.98
96312330--96312418
42
2.1
42
89
0
133
33
13
16
35
1.88
96312445--96312559
31
3.7
31
93
3
189
30
17
25
26
1.97
96321073--96321156
6
15.6
5
76
16
64
73
3
4
17
1.15
96321083--96321156
17
4.4
17
77
13
64
72
4
5
17
1.19
96326735--96326793
29
2.0
29
100
0
118
27
18
10
44
1.82
96334146--96334278
25
5.3
25
72
16
64
32
17
26
24
1.97
96334226--96334320
25
3.8
24
77
5
91
36
17
24
21
1.94
96339140--96339330
56
3.4
57
79
5
185
30
22
16
30
1.96
96342095--96342127
7
4.7
7
100
0
66
12
0
12
75
1.04
96343741--96343832
37
2.5
37
82
8
116
32
22
1
43
1.61
96344132--96344169
8
4.8
8
84
9
51
10
10
2
76
1.12
96345866--96345912
24
2.0
24
82
0
58
31
21
4
42
1.72
96346496--96346581
21
4.0
21
75
7
84
34
20
23
20
1.96
96346530--96346604
23
3.3
23
74
7
91
36
20
22
21
1.96
96346507--96346605
44
2.2
44
100
0
198
35
20
23
21
1.96
96346666--96347040
186
2.0
186
98
0
732
35
23
4
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96347514--96347555
21
2.0
21
100
0
84
38
19
9
33
1.84
96347691--96347724
17
1.9
18
88
5
52
35
23
0
41
1.55
96348799--96348845
19
2.4
19
76
20
51
36
19
4
40
1.71
96351788--96351924
69
2.0
69
88
0
202
47
12
13
26
1.79
96359532--96359560
14
2.0
15
93
6
51
48
0
0
51
1.00
96359946--96359976
2
15.5
2
93
0
53
51
0
0
48
1.00
96362016--96362060
11
4.2
11
85
2
56
77
0
22
0
0.76
96362012--96362060
10
5.1
10
76
16
50
79
0
20
0
0.73
96362721--96362781
32
1.9
32
96
0
113
39
1
6
52
1.37
96362726--96362777
16
3.2
16
68
10
52
36
1
7
53
1.41
96364350--96364379
15
2.0
15
93
0
51
6
10
13
70
1.34
96365825--96365898
27
2.7
27
81
4
87
43
21
16
18
1.88
96366299--96366414
27
4.3
27
77
8
85
30
10
15
43
1.80
96366313--96366423
27
4.1
28
76
12
101
31
9
17
42
1.80
96369531--96369572
2
21.0
2
100
0
84
50
0
0
50
1.00
96370858--96371133
50
5.7
47
82
7
213
25
30
18
25
1.98
96370858--96371141
95
2.9
95
82
6
275
25
30
18
25
1.98
96370908--96371147
50
4.9
50
84
6
305
24
30
17
27
1.97
96389138--96389169
5
6.6
5
92
7
57
81
0
0
18
0.70
96389139--96389169
9
3.3
9
95
4
53
80
0
0
19
0.71
96404318--96404408
42
2.1
42
84
6
112
34
35
12
18
1.88
96405085--96405296
118
1.8
117
95
1
388
22
17
31
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96405440--96405480
1
41.0
1
90
0
64
95
0
4
0
0.28
96408360--96408426
35
1.9
35
87
3
100
38
10
8
41
1.71
96413988--96414020
9
3.7
9
91
0
57
24
12
24
39
1.89
96413986--96414020
18
1.9
18
100
0
70
28
11
22
37
1.89
96414384--96414422
16
2.3
18
86
8
55
35
2
0
61
1.10
96416927--96417001
35
2.1
36
87
4
109
42
13
6
37
1.70
96422150--96422190
12
3.4
12
82
0
55
43
0
43
12
1.41
96422141--96422175
18
1.9
18
88
0
52
42
0
48
8
1.33
96422519--96422564
18
2.6
18
89
0
65
36
0
52
10
1.37
96424205--96424264
3
20.0
3
100
0
120
33
0
33
33
1.58
96427713--96427742
12
2.6
12
94
5
53
53
10
0
36
1.35
96430449--96430540
44
2.1
44
91
0
148
36
28
10
23
1.89
96432104--96432136
13
2.6
13
90
4
50
39
0
12
48
1.40
96437510--96437601
6
16.0
6
78
13
86
18
4
0
77
0.94
96437515--96437601
17
5.2
16
75
15
79
18
4
0
77
0.94
96437510--96437601
23
4.0
23
83
6
100
18
4
0
77
0.94
96440125--96440171
20
2.3
20
92
7
78
36
10
19
34
1.86
96440219--96440313
25
3.9
24
86
6
113
24
24
23
28
2.00
96440244--96440326
25
3.4
24
84
15
116
26
20
22
30
1.98
96440219--96440338
49
2.4
50
83
9
156
25
23
23
27
2.00
96440535--96440596
31
2.0
31
90
0
97
37
16
22
24
1.94
96448434--96448473
21
1.9
21
89
0
62
35
0
20
45
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96457849--96458013
46
3.6
46
75
14
185
19
18
30
31
1.95
96457842--96458015
93
1.9
93
92
0
294
18
18
31
31
1.95
96468524--96468692
40
4.2
40
80
4
173
23
26
21
28
1.99
96476624--96476732
37
2.9
36
85
9
137
23
28
23
23
2.00
96476593--96476734
40
3.7
38
81
9
137
24
28
23
23
2.00
96476626--96476773
40
3.8
37
79
11
136
23
27
22
26
2.00
96482009--96482138
40
3.2
40
84
0
152
23
27
23
26
2.00
96487422--96487604
40
4.6
40
83
3
181
23
26
22
27
1.99
96495504--96495649
40
3.7
40
84
0
175
24
27
21
26
2.00
96495536--96495687
40
3.8
40
84
5
164
23
25
22
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427