Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  142  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38380968--38381019
27
1.9
27
84
7
70
57
1
15
25
1.48
38380998--38381074
16
4.6
16
71
17
57
62
3
11
22
1.45
38382278--38382319
16
2.7
16
92
3
68
16
0
14
69
1.20
38382524--38382640
44
2.6
45
84
7
134
29
23
17
28
1.97
38384083--38384250
39
4.3
39
84
3
203
23
31
21
23
1.98
38384113--38384250
39
3.5
39
89
3
206
24
31
20
23
1.98
38385686--38385834
80
1.9
80
81
2
183
22
30
24
22
1.99
38385727--38385834
40
2.7
38
85
8
128
21
29
25
23
1.99
38395412--38395592
78
2.3
78
89
1
265
22
31
22
24
1.98
38395441--38395593
39
3.9
39
93
0
252
23
32
20
23
1.98
38403435--38403586
39
3.9
39
91
0
232
23
31
21
24
1.98
38405302--38405489
95
2.0
95
85
2
252
29
21
17
31
1.96
38418675--38418847
93
1.9
93
86
0
247
19
19
31
29
1.96
38426263--38426450
49
3.8
49
80
2
232
29
26
19
25
1.98
38426257--38426455
100
2.0
100
91
0
326
29
26
20
24
1.99
38429735--38429795
29
2.1
29
96
0
113
24
14
31
29
1.95
38436482--38436528
3
15.7
3
86
8
69
65
0
4
29
1.11
38436663--38436707
16
2.9
16
84
12
58
64
2
8
24
1.34
38436705--38436879
86
2.0
88
95
3
318
64
4
12
18
1.44
38438087--38438120
16
2.1
16
89
10
52
23
0
8
67
1.18
38442464--38442505
10
4.4
10
82
8
52
73
0
0
26
0.83
38442459--38442506
18
2.7
18
90
0
69
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38444163--38444219
24
2.4
24
79
5
62
42
17
14
26
1.87
38444189--38444223
12
2.9
12
86
0
52
45
14
20
20
1.85
38448884--38448987
39
2.7
39
90
1
156
22
21
25
30
1.98
38457098--38457128
2
15.5
2
100
0
62
48
0
0
51
1.00
38465174--38465221
25
1.9
25
86
0
69
33
25
16
25
1.96
38465334--38465477
24
6.0
24
87
8
204
29
20
21
27
1.98
38465670--38465729
31
1.9
31
93
0
102
33
16
21
28
1.95
38466944--38467172
48
4.9
48
75
7
164
27
20
24
28
1.99
38470326--38470378
13
3.9
13
83
11
63
35
1
0
62
1.06
38470326--38470378
25
2.2
25
83
12
67
35
1
0
62
1.06
38478319--38478355
19
1.9
19
88
0
56
70
0
27
2
1.01
38481468--38481527
30
2.0
30
90
0
93
26
21
15
36
1.93
38482508--38482554
3
15.7
3
86
8
69
65
0
4
29
1.11
38482689--38482733
16
2.9
16
84
12
58
64
2
8
24
1.34
38482731--38482903
85
2.0
87
93
4
298
65
3
12
19
1.39
38482907--38482978
30
2.6
27
68
12
72
61
2
15
20
1.46
38497974--38498103
47
2.8
47
83
0
152
22
13
27
36
1.92
38499706--38499758
23
2.4
22
84
9
63
22
9
13
54
1.67
38502214--38502251
15
2.8
13
88
11
51
34
7
13
44
1.72
38502402--38502597
48
4.2
48
72
9
170
27
18
25
29
1.98
38505850--38505881
15
2.1
15
100
0
64
34
6
0
59
1.23
38505853--38505905
21
2.3
23
81
12
65
35
3
0
60
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38520031--38520133
29
3.6
29
82
5
120
27
25
16
31
1.97
38528100--38528202
29
3.6
28
85
5
127
27
26
16
30
1.97
38528936--38528998
31
2.1
31
88
5
94
20
9
19
50
1.74
38530151--38530332
40
4.6
40
75
8
158
24
24
26
24
2.00
38530151--38530302
78
1.9
79
82
5
191
25
23
26
24
2.00
38532369--38532499
30
4.5
30
86
8
171
32
13
25
28
1.94
38532369--38532499
58
2.2
58
86
4
174
32
13
25
28
1.94
38540333--38540463
30
4.5
30
86
8
171
32
13
25
28
1.94
38540333--38540463
58
2.2
58
86
4
174
32
13
25
28
1.94
38547303--38547335
18
1.9
17
88
11
50
27
15
12
45
1.81
38552640--38552696
9
5.9
9
73
15
51
35
8
21
35
1.84
38552638--38552708
20
3.5
20
94
0
124
35
11
21
32
1.89
38552649--38552703
11
5.4
11
70
16
55
36
12
20
30
1.90
38552753--38552942
24
8.0
24
94
1
321
27
23
21
27
1.99
38553160--38553222
30
2.1
31
84
3
83
36
14
22
26
1.92
38559564--38559597
18
1.9
17
94
5
59
8
17
8
64
1.47
38560717--38560764
25
2.0
24
87
4
69
33
25
14
27
1.94
38560803--38560859
9
5.9
9
73
15
51
36
7
21
35
1.80
38560801--38560871
20
3.5
20
86
7
108
36
9
21
32
1.86
38560918--38560978
32
1.9
32
90
6
97
32
16
26
24
1.96
38560950--38561138
24
7.9
24
92
3
285
28
22
21
27
1.99
38570000--38570059
30
2.0
30
90
6
95
16
23
35
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38570725--38570784
30
2.0
30
90
0
93
25
23
16
35
1.95
38571041--38571071
16
1.9
16
93
0
53
48
16
3
32
1.62
38572143--38572253
55
2.0
55
96
0
204
36
2
8
52
1.45
38572333--38572383
25
2.0
26
88
3
77
41
3
11
43
1.60
38575680--38575779
39
2.6
39
86
0
137
34
9
18
39
1.82
38586002--38586075
31
2.5
31
87
10
93
29
25
13
31
1.94
38586001--38586104
28
3.5
29
82
6
111
29
26
13
29
1.94
38586578--38586602
2
12.5
2
100
0
50
52
0
0
48
1.00
38602505--38602606
29
3.5
29
90
0
150
27
15
33
23
1.95
38604673--38604711
18
2.2
18
86
4
53
64
5
30
0
1.15
38609970--38610681
92
7.8
90
68
17
288
33
20
19
26
1.97
38609679--38610951
137
9.3
137
92
0
1981
34
20
19
26
1.96
38612854--38613095
132
1.8
132
81
1
306
26
18
18
36
1.94
38625567--38625597
11
2.8
11
95
0
53
67
6
9
16
1.39
38630691--38630756
6
10.8
6
80
13
73
84
0
15
0
0.61
38630691--38630757
18
3.6
18
84
15
84
85
0
14
0
0.61
38630694--38630758
19
3.4
19
85
14
89
84
0
15
0
0.62
38630691--38630756
24
2.7
24
86
9
89
84
0
15
0
0.61
38630691--38630759
20
3.5
19
79
16
79
85
0
14
0
0.60
38631673--38633038
207
6.7
207
90
2
2077
31
18
21
28
1.96
38633421--38633475
17
3.1
17
90
10
92
36
10
16
36
1.84
38633418--38633484
19
3.6
19
90
8
111
35
11
17
34
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38639043--38639083
7
5.9
7
83
11
57
82
0
17
0
0.66
38639051--38639083
16
2.1
15
94
5
57
84
0
15
0
0.61
38640032--38640505
84
5.6
83
86
5
615
31
21
22
24
1.98
38640032--38640505
171
2.8
171
92
0
761
31
21
22
24
1.98
38640495--38640766
92
3.0
92
85
1
350
31
16
23
28
1.96
38640721--38641039
44
7.3
44
80
9
305
30
15
26
27
1.96
38640947--38641039
45
2.1
45
91
4
152
31
15
29
24
1.95
38640818--38641069
130
1.9
129
81
8
298
28
17
26
27
1.97
38641383--38641455
19
3.9
19
89
7
123
36
10
16
35
1.84
38641404--38641441
17
2.5
15
80
19
51
39
10
15
34
1.82
38641383--38641478
19
4.8
22
84
10
79
36
9
16
37
1.81
38641761--38641793
16
2.0
17
88
5
50
27
3
0
69
1.03
38643581--38643611
16
1.9
16
93
0
53
41
3
0
54
1.16
38645725--38645792
34
2.0
34
100
0
136
41
17
11
29
1.85
38650174--38650216
19
2.1
21
87
8
63
13
2
23
60
1.45
38663725--38663894
46
3.7
45
77
12
175
28
27
20
23
1.99
38663730--38663900
93
1.8
93
91
0
279
28
28
21
22
1.99
38670247--38670433
71
2.7
68
93
5
281
18
28
18
34
1.95
38670270--38670433
71
2.3
71
100
0
328
18
28
17
35
1.94
38670270--38670467
71
2.8
70
92
3
276
20
28
17
33
1.95
38677815--38678001
71
2.7
68
93
5
281
18
28
18
34
1.95
38677838--38678001
71
2.3
71
100
0
328
18
28
17
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38677838--38678035
71
2.8
70
92
3
276
20
28
17
33
1.95
38680244--38680347
51
2.0
51
98
0
199
27
15
20
36
1.93
38682669--38682771
28
3.5
30
84
6
120
30
13
26
30
1.94
38682698--38682771
31
2.5
28
87
10
96
31
13
25
29
1.94
38693463--38693962
88
5.7
88
85
1
500
30
19
22
28
1.98
38693463--38693924
44
10.5
44
76
3
417
30
19
22
27
1.98
38693555--38694013
88
5.2
88
85
2
429
30
19
23
26
1.98
38695968--38696009
5
8.6
5
84
5
59
19
2
0
78
0.86
38697934--38697959
7
3.7
7
100
0
52
30
0
26
42
1.56
38699912--38699969
22
2.8
21
75
17
59
6
20
0
72
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427