Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  373  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108486065--108486231
84
2.0
84
93
0
289
25
22
32
20
1.98
108488117--108488175
26
2.3
27
77
11
70
67
3
0
28
1.06
108488149--108488207
21
2.8
22
85
7
70
69
6
0
23
1.12
108488254--108488286
15
2.1
16
88
11
50
69
0
0
30
0.88
108489480--108489508
14
2.0
15
93
6
51
51
6
0
41
1.28
108490341--108490374
12
2.6
13
86
13
52
88
0
8
2
0.62
108490348--108490374
12
2.2
12
100
0
54
92
0
7
0
0.38
108490341--108490370
14
2.1
14
93
0
51
90
0
6
3
0.56
108501354--108501384
3
10.3
3
100
0
62
0
0
32
67
0.91
108507340--108507373
16
2.2
15
89
5
50
8
2
8
79
1.03
108513429--108513491
30
2.2
28
80
8
72
23
25
4
46
1.72
108513436--108513494
30
2.0
29
90
3
91
22
25
3
49
1.65
108516847--108516885
16
2.4
18
76
24
50
46
0
0
53
1.00
108531328--108531510
92
2.0
92
95
0
330
37
21
14
26
1.92
108536729--108536787
22
2.7
22
78
5
57
20
11
11
55
1.67
108538050--108538091
21
2.0
21
86
9
59
35
14
9
40
1.78
108538850--108538917
18
3.8
18
77
11
61
55
0
2
41
1.15
108543600--108543681
6
13.8
6
90
2
103
68
6
0
25
1.13
108543948--108543976
9
3.3
9
95
4
51
93
6
0
0
0.36
108554604--108554654
15
3.4
15
71
10
50
7
35
13
43
1.73
108554598--108554654
30
1.9
30
88
0
87
7
36
15
40
1.75
108560979--108561025
23
2.0
23
100
0
94
40
25
12
21
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108569260--108569410
53
2.8
53
89
4
214
29
27
16
25
1.97
108572099--108572154
21
2.7
21
88
0
85
30
32
8
28
1.88
108572489--108572558
21
3.3
21
75
15
72
52
1
2
42
1.24
108574237--108574295
31
1.9
30
89
3
91
42
10
3
44
1.55
108590592--108590618
10
2.7
10
100
0
54
0
37
0
62
0.95
108592732--108592839
29
3.8
28
71
19
71
51
11
16
20
1.74
108597057--108597118
30
2.1
30
100
0
124
35
16
29
19
1.93
108603134--108603275
69
2.1
69
93
0
239
27
26
14
30
1.95
108612871--108612910
3
13.3
3
89
0
62
32
30
2
35
1.71
108613947--108613991
23
2.0
23
81
0
54
26
4
24
44
1.72
108616871--108616901
16
1.9
16
93
0
53
48
0
3
48
1.17
108616877--108616941
34
1.9
34
84
9
89
52
3
6
38
1.42
108616972--108617030
22
2.6
22
78
10
57
50
1
1
45
1.21
108618927--108618962
18
2.0
18
94
0
63
55
13
13
16
1.69
108629169--108629230
16
3.8
15
83
12
70
64
1
1
32
1.13
108629165--108629225
24
2.5
24
81
7
70
65
1
1
31
1.12
108629165--108629230
8
8.0
8
78
10
62
65
1
1
31
1.11
108629411--108629570
54
3.0
55
79
12
174
56
3
5
35
1.37
108629366--108629584
25
8.7
25
66
20
91
56
3
5
34
1.40
108629425--108629526
29
3.6
28
73
12
84
56
2
5
34
1.38
108629546--108629590
24
1.9
23
90
4
72
62
0
2
35
1.08
108630080--108630224
30
4.8
30
93
0
245
22
3
48
24
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108630080--108630224
60
2.4
60
97
0
272
22
3
48
24
1.66
108631108--108631378
77
3.6
77
91
2
406
33
21
18
26
1.96
108631429--108631990
73
7.5
73
70
12
366
31
20
16
30
1.95
108631670--108631989
146
2.2
145
85
4
421
30
22
16
30
1.96
108640255--108640289
12
2.9
12
82
0
52
45
2
20
31
1.65
108641859--108641906
16
3.1
15
90
6
69
64
2
2
31
1.16
108641855--108641910
24
2.3
24
81
6
69
66
1
1
30
1.12
108641855--108641906
8
6.5
8
82
8
61
65
1
1
30
1.14
108642058--108642195
25
5.5
24
72
14
102
55
3
6
34
1.43
108642124--108642177
15
3.7
15
77
5
56
61
1
3
33
1.25
108642106--108642259
53
2.9
52
76
16
147
55
3
5
35
1.38
108642231--108642276
25
1.9
25
86
8
69
60
0
4
34
1.16
108642761--108642874
30
3.8
30
90
2
185
21
3
49
25
1.66
108642761--108642874
59
1.9
60
94
1
203
21
3
49
25
1.66
108643612--108643643
2
16.5
2
93
6
57
53
0
0
46
1.00
108644305--108644348
16
2.9
15
83
13
54
56
2
2
38
1.24
108644365--108644398
15
2.3
15
90
10
52
67
11
0
20
1.21
108650525--108650564
9
4.4
9
87
0
53
45
2
5
47
1.38
108650832--108650862
14
2.2
14
100
0
62
45
6
6
41
1.55
108652045--108652098
21
2.5
21
84
6
63
66
3
1
27
1.19
108655120--108655168
24
2.0
24
100
0
98
28
20
24
26
1.99
108663614--108663682
23
3.3
23
69
26
80
47
7
13
31
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108663611--108663689
39
2.0
39
100
0
158
48
7
12
31
1.69
108667837--108667919
27
2.9
27
73
14
69
37
1
6
55
1.32
108673259--108673305
23
2.0
24
87
4
69
36
2
4
57
1.30
108673928--108673965
2
19.0
2
100
0
76
50
0
0
50
1.00
108676310--108676349
15
2.6
15
92
4
62
55
0
0
45
0.99
108676470--108676517
24
2.0
24
91
0
78
47
10
2
39
1.49
108699468--108699496
8
3.6
8
100
0
58
0
10
0
89
0.48
108701103--108701175
38
1.9
37
91
2
119
47
5
12
34
1.64
108710919--108710949
13
2.4
13
88
0
53
51
6
9
32
1.60
108711184--108711356
89
1.9
90
82
1
213
32
20
8
37
1.84
108711384--108711428
18
2.4
19
85
10
58
55
0
4
40
1.20
108711384--108711434
18
2.8
17
82
14
57
58
0
3
37
1.16
108711411--108711456
18
2.4
20
82
10
60
58
0
0
41
0.98
108711382--108711511
19
6.8
19
69
11
86
59
0
3
36
1.16
108711739--108711806
9
7.6
9
71
15
52
29
4
1
64
1.21
108711739--108711806
20
3.8
18
73
16
52
29
4
1
64
1.21
108713158--108713593
3
144.3
3
68
16
127
60
3
7
28
1.41
108713166--108713246
29
2.7
29
84
7
99
59
0
8
32
1.28
108713175--108713255
32
2.5
32
76
11
94
60
0
7
32
1.24
108713306--108713476
14
11.6
14
63
14
58
61
4
6
27
1.38
108713414--108713473
23
2.7
23
84
2
68
63
1
5
30
1.25
108713398--108713467
20
3.8
18
77
19
58
64
2
2
30
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108715663--108715730
27
2.6
25
73
8
64
36
20
20
22
1.95
108715820--108715867
25
2.0
24
83
4
60
33
22
25
18
1.97
108717630--108717704
37
2.0
37
89
0
114
21
16
10
52
1.73
108719718--108719983
46
6.0
45
85
8
339
21
23
15
39
1.92
108719896--108719971
38
2.0
38
100
0
152
21
26
18
34
1.96
108722120--108722171
11
4.7
11
76
9
52
63
3
0
32
1.12
108744818--108744897
40
2.0
40
95
0
142
33
23
11
31
1.90
108754185--108754227
20
2.1
21
82
4
52
25
9
2
62
1.37
108756756--108756820
28
2.3
28
73
19
64
70
1
21
6
1.17
108761155--108761220
30
2.1
30
88
5
96
25
51
0
22
1.48
108762047--108762088
19
2.2
19
100
0
84
19
16
35
28
1.93
108766784--108766838
22
2.5
22
80
8
60
52
0
0
47
1.00
108780059--108780124
32
2.1
32
85
2
89
56
7
0
36
1.28
108786300--108786347
20
2.3
20
82
3
60
29
8
6
56
1.53
108788865--108788941
29
2.7
27
75
13
73
25
10
3
59
1.47
108789685--108789721
14
2.7
13
88
12
56
70
0
2
27
1.01
108789693--108789719
7
3.9
7
100
0
54
74
0
0
25
0.83
108795217--108795260
16
2.7
16
85
3
61
38
0
2
59
1.10
108795331--108795380
26
2.0
26
92
4
84
62
2
0
36
1.07
108801515--108801539
2
12.5
2
100
0
50
52
0
0
48
1.00
108804791--108804823
17
2.0
17
94
5
59
36
15
0
48
1.45
108805109--108805270
46
3.5
47
88
5
217
19
23
14
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108808041--108808131
46
2.0
46
100
0
182
23
24
13
39
1.90
108809947--108809994
11
4.2
11
79
10
51
62
2
0
35
1.07
108812799--108812831
12
2.8
12
100
0
66
42
15
24
18
1.88
108814888--108814931
23
1.9
23
85
0
61
61
2
2
34
1.21
108816991--108817043
20
2.7
20
87
0
70
15
32
33
18
1.92
108817277--108817319
21
2.2
21
84
15
58
44
20
4
30
1.72
108817858--108818017
52
3.1
51
79
4
176
32
25
16
26
1.96
108824633--108824675
21
2.2
21
84
15
58
44
20
4
30
1.72
108825177--108825304
53
2.6
49
78
9
127
28
28
17
25
1.97
108834009--108834054
25
2.0
24
87
12
69
30
2
0
67
1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427