Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  366  of  427  ( 51162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106184174--106184419
117
2.1
118
86
2
352
41
8
8
41
1.66
106184435--106184465
2
15.5
2
100
0
62
48
0
0
51
1.00
106193796--106193842
19
2.3
20
82
10
60
34
0
10
55
1.35
106200942--106200993
25
2.1
25
85
0
68
38
15
9
36
1.80
106205201--106205403
101
2.0
101
100
0
406
34
14
10
39
1.81
106207345--106207370
10
2.6
10
100
0
52
0
11
0
88
0.52
106208409--106208592
46
4.0
46
91
0
287
22
23
13
41
1.88
106210668--106210706
16
2.4
16
82
0
51
0
33
0
66
0.92
106210735--106210775
17
2.4
18
88
8
59
7
17
0
75
1.02
106212350--106212525
42
4.0
42
79
12
178
30
27
14
28
1.95
106212431--106212552
49
2.6
48
86
3
167
30
28
15
25
1.96
106212625--106212773
31
4.8
31
90
1
228
26
26
19
26
1.99
106212749--106212877
50
2.5
51
91
2
206
25
23
16
34
1.95
106215919--106215995
29
2.6
29
83
8
84
46
12
14
25
1.80
106223571--106223635
32
2.0
33
90
3
105
41
4
10
43
1.60
106224661--106224915
108
2.3
111
88
6
408
43
10
6
40
1.64
106225838--106225900
27
2.3
27
83
0
72
22
25
23
28
1.99
106229959--106230508
113
4.8
113
95
1
929
50
16
1
32
1.53
106231306--106231334
12
2.5
12
94
5
51
27
6
6
58
1.50
106231432--106231482
25
2.3
23
81
18
63
29
1
5
62
1.29
106231439--106231488
25
2.2
22
82
13
57
32
2
6
60
1.32
106233948--106234008
3
20.3
3
76
6
52
59
3
4
32
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106233951--106234008
21
2.8
21
81
0
62
58
3
5
32
1.37
106234128--106234203
3
25.7
3
75
2
73
61
1
5
31
1.26
106235879--106235986
57
1.9
57
81
9
134
38
7
12
41
1.70
106240437--106240461
2
12.5
2
100
0
50
52
0
0
48
1.00
106243665--106243720
23
2.4
24
79
8
62
8
7
7
76
1.15
106243684--106243729
21
2.2
22
85
14
62
10
6
8
73
1.23
106247617--106247645
6
4.8
6
100
0
58
82
0
0
17
0.66
106251802--106252321
281
1.9
279
86
2
756
39
9
11
39
1.75
106251802--106252345
279
1.9
280
85
3
754
39
9
11
39
1.75
106278397--106278430
17
2.0
17
100
0
68
29
5
5
58
1.45
106279233--106279259
4
6.8
4
100
0
54
22
0
0
77
0.76
106279569--106279694
39
3.2
39
75
13
125
30
26
19
23
1.98
106279807--106279842
18
2.0
18
94
0
63
25
25
0
50
1.50
106279807--106279842
12
3.0
12
83
0
54
25
25
0
50
1.50
106279854--106279920
34
2.0
33
82
8
82
47
19
0
32
1.50
106280685--106280728
21
2.1
21
95
0
79
59
0
0
40
0.98
106280693--106280756
21
3.2
20
80
12
62
48
3
0
48
1.17
106286494--106286526
9
3.8
9
84
8
50
66
0
3
30
1.06
106286487--106286520
17
1.9
17
88
5
50
61
0
5
32
1.20
106286502--106286551
25
2.0
25
84
3
66
62
2
6
30
1.31
106286601--106286682
37
2.2
38
80
6
87
64
1
6
28
1.24
106286937--106287008
37
1.9
37
83
5
92
26
5
1
66
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106291907--106291945
18
2.1
19
85
4
53
61
0
5
33
1.18
106302623--106302649
6
4.5
6
100
0
54
18
18
14
48
1.82
106302709--106302797
46
1.9
47
90
2
144
17
20
22
39
1.92
106302919--106302970
18
2.8
19
79
5
70
30
5
9
53
1.57
106302921--106302986
18
3.6
18
79
2
69
31
7
13
46
1.71
106305391--106305451
30
2.0
31
84
9
81
49
0
1
49
1.10
106308629--106308670
20
2.0
21
81
9
50
54
0
0
45
0.99
106314764--106314789
3
8.7
3
100
0
52
69
0
30
0
0.89
106314955--106314996
21
2.0
21
100
0
84
19
14
19
47
1.82
106318392--106318432
20
2.0
20
100
0
82
53
24
4
17
1.63
106336525--106336770
132
1.9
132
89
4
388
30
19
19
30
1.97
106339305--106339363
23
2.4
26
78
13
72
40
5
3
50
1.41
106339975--106340018
20
2.3
19
80
4
52
50
0
4
45
1.22
106348726--106348771
22
2.1
21
88
4
65
36
0
0
63
0.95
106348724--106348807
35
2.5
35
85
12
122
38
0
0
61
0.96
106348769--106348821
22
2.4
22
90
6
81
39
0
0
60
0.97
106348769--106348836
22
3.0
23
83
10
70
45
0
0
54
0.99
106349235--106349291
20
3.4
17
77
20
57
61
0
1
36
1.07
106349249--106349306
20
2.8
20
78
5
71
60
0
1
37
1.07
106349744--106349815
20
3.5
20
71
16
67
38
6
4
50
1.49
106349735--106349820
40
2.1
42
93
4
149
37
5
3
53
1.42
106349743--106349830
40
2.2
40
86
8
117
38
5
3
52
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106349937--106350070
9
15.3
9
65
18
52
47
1
0
50
1.15
106349893--106350030
71
1.9
71
92
2
233
49
2
2
45
1.29
106349949--106350060
42
2.6
42
78
7
109
49
1
0
48
1.18
106350003--106350091
42
2.1
42
80
0
97
48
1
4
46
1.30
106352376--106352477
30
3.4
30
88
0
141
22
26
21
29
1.99
106356576--106356735
39
4.1
39
93
0
266
26
31
21
20
1.98
106357656--106357680
13
1.9
13
100
0
50
48
0
0
52
1.00
106359479--106359602
50
2.5
51
87
1
178
35
15
24
25
1.94
106359576--106359759
31
5.9
31
88
0
269
29
19
26
24
1.98
106360566--106360600
2
17.5
2
100
0
70
51
0
0
48
1.00
106363076--106363341
46
6.0
45
85
8
339
21
23
15
39
1.92
106363254--106363329
38
2.0
38
100
0
152
21
26
18
34
1.96
106365425--106365476
11
4.7
11
76
9
52
63
3
0
32
1.12
106366425--106366484
18
3.3
18
75
9
59
30
15
11
43
1.82
106366974--106367045
3
24.0
3
97
0
135
65
0
0
34
0.93
106368272--106368308
11
3.5
11
82
14
51
56
0
0
43
0.99
106368262--106368308
9
5.0
9
78
17
51
57
0
0
42
0.98
106368336--106368391
24
2.3
24
84
9
69
57
1
0
41
1.09
106368269--106368500
121
1.9
123
83
11
307
54
3
2
40
1.28
106368470--106368533
21
3.0
22
79
11
69
56
0
0
43
0.99
106368533--106368604
22
3.2
22
78
14
76
52
5
0
41
1.24
106368483--106368569
20
4.7
19
70
25
71
58
1
0
40
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106368528--106368611
23
3.6
22
76
13
80
54
4
0
40
1.21
106368486--106368604
53
2.4
47
83
12
125
56
3
0
40
1.16
106370451--106370553
42
2.4
43
81
1
136
31
28
17
23
1.97
106370692--106370734
21
2.0
21
82
8
52
58
2
2
37
1.24
106372836--106372861
13
2.0
13
100
0
52
92
7
0
0
0.39
106375952--106376023
7
10.0
7
86
5
54
36
0
1
62
1.04
106375957--106376023
14
4.6
15
77
5
66
32
0
1
65
1.02
106375977--106376040
16
4.2
16
80
6
62
26
0
0
73
0.84
106375967--106376040
7
10.0
7
83
11
76
28
0
1
70
0.96
106375967--106376040
15
4.9
15
78
6
87
28
0
1
70
0.96
106375952--106376054
51
2.0
51
83
7
129
32
0
2
65
1.08
106376639--106376702
7
9.0
7
75
3
56
46
26
3
23
1.67
106376636--106376686
15
3.5
15
78
5
59
47
29
1
21
1.62
106376899--106377162
41
6.5
41
90
0
386
21
24
20
33
1.97
106378856--106379023
35
4.6
35
85
7
185
33
23
10
32
1.89
106378851--106379023
75
2.4
73
83
9
210
33
23
10
32
1.89
106393326--106393355
2
15.0
2
92
0
51
50
3
0
46
1.18
106393355--106393387
2
16.5
2
93
0
57
48
3
48
0
1.17
106394438--106394507
21
3.1
23
76
17
67
44
5
1
48
1.35
106394445--106394507
20
2.8
23
81
15
71
46
6
1
46
1.38
106394449--106394516
24
3.0
21
80
16
66
48
5
1
44
1.36
106394726--106394754
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106396136--106396201
31
2.2
31
86
2
89
39
7
4
48
1.52
106396181--106396238
21
2.7
21
89
2
89
34
12
6
46
1.68
106400905--106400936
12
2.5
13
90
10
57
31
25
6
37
1.81
106401401--106401483
41
2.0
41
97
0
157
28
20
9
40
1.84
106403822--106404315
76
6.6
76
77
3
453
42
15
17
23
1.88
106403843--106404287
146
3.0
146
81
3
496
42
16
17
23
1.89
106403832--106404294
152
3.1
152
82
3
560
42
16
17
23
1.88
106405556--106405595
19
2.1
19
100
0
80
55
0
10
35
1.34
106410110--106410161
25
2.1
25
85
0
68
38
15
9
36
1.80
106411013--106411057
19
2.4
19
100
0
90
31
17
8
42
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427