genome.fa.s11.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  167  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46488119--46488248	66	1.9	68	84	7	174	31	16	31	20	1.95
46493608--46493641	17	2.0	17	100	0	68	29	11	11	47	1.76
46495954--46496012	28	2.1	28	96	0	109	44	25	11	18	1.84
46497160--46497370	48	4.3	48	86	7	296	25	28	21	25	1.99
46497192--46497354	54	3.1	54	87	9	241	24	30	22	23	1.99
46497164--46497354	102	1.9	102	93	0	328	25	28	21	24	1.99
46499464--46499600	43	3.2	42	74	10	118	27	24	21	27	1.99
46510330--46510393	33	1.9	33	87	0	92	20	31	21	26	1.98
46512706--46512745	20	2.0	20	95	0	71	25	22	20	32	1.98
46513095--46513266	86	2.0	86	96	0	317	25	28	13	31	1.94
46515453--46515509	30	1.9	30	100	0	114	28	17	22	31	1.97
46516509--46516552	3	14.7	3	100	0	88	68	0	0	31	0.90
46518866--46518927	3	20.7	3	89	0	97	30	33	0	35	1.58
46522579--46522627	17	2.8	17	76	17	55	26	24	0	48	1.51
46522583--46522614	17	1.9	17	93	6	57	28	18	0	53	1.45
46533786--46533845	27	2.2	27	88	5	86	25	15	25	35	1.94
46534855--46534914	29	2.1	29	93	0	102	28	0	28	43	1.55
46535774--46535852	12	6.6	12	72	15	56	72	5	6	16	1.24
46535767--46535818	25	2.0	25	92	3	86	69	5	5	19	1.30
46536877--46536905	12	2.5	12	94	5	51	65	6	24	3	1.33
46536903--46536965	30	2.1	29	85	8	83	52	3	30	14	1.57
46540464--46540490	7	3.9	7	100	0	54	44	0	55	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46542643--46542685	16	2.7	16	79	13	52	51	13	20	13	1.76
46542902--46542992	29	3.2	30	84	9	120	24	15	32	27	1.95
46546639--46546683	20	2.2	20	100	0	90	28	28	4	37	1.77
46555421--46555922	47	10.2	49	90	6	727	32	7	29	29	1.86
46555605--46555629	12	2.1	12	100	0	50	40	0	24	36	1.55
46555556--46555727	61	3.0	61	80	19	260	33	6	27	31	1.83
46562885--46562954	28	2.5	28	90	9	108	31	27	12	28	1.93
46576114--46576283	40	4.2	40	85	3	225	21	28	24	25	1.99
46580731--46580898	40	4.2	40	82	1	185	24	26	22	26	2.00
46587610--46587801	39	4.9	40	90	6	306	21	21	29	27	1.99
46587807--46588080	57	4.8	57	90	0	415	22	18	29	29	1.97
46587868--46588080	28	7.6	27	72	8	165	22	17	29	30	1.97
46587807--46588108	113	2.7	114	87	2	439	22	18	29	29	1.97
46598815--46598916	28	3.5	28	68	21	75	24	28	19	27	1.99
46598945--46598990	20	2.3	20	82	14	60	28	28	17	26	1.98
46598957--46599000	19	2.2	20	84	4	54	34	25	18	22	1.96
46601794--46601822	13	2.2	13	100	0	58	65	6	6	20	1.40
46603330--46603357	2	14.0	2	100	0	56	50	0	0	50	1.00
46605015--46605041	14	1.9	14	100	0	54	37	14	22	25	1.93
46605776--46606090	46	6.7	48	77	10	296	26	20	30	22	1.98
46605814--46606092	99	2.9	97	79	13	312	26	20	31	21	1.98
46613437--46613715	46	5.9	48	78	10	288	26	19	31	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46618057--46618099	19	2.3	19	95	0	77	20	27	13	37	1.91
46618892--46618957	33	2.0	33	96	0	123	50	18	7	24	1.72
46619873--46619965	42	2.2	42	84	0	123	29	22	13	34	1.93
46620077--46620181	49	2.1	49	85	5	140	49	6	20	22	1.72
46622472--46622501	15	2.0	15	93	0	51	13	10	0	76	1.01
46622871--46623282	137	3.0	135	85	5	566	46	5	7	39	1.56
46624456--46624625	82	2.1	81	94	1	295	18	32	21	28	1.96
46632982--46633071	27	3.3	27	82	3	110	41	17	8	32	1.81
46633066--46633126	27	2.3	27	79	0	68	32	27	8	31	1.86
46633077--46633287	27	7.8	27	89	2	271	27	23	9	39	1.85
46633266--46633350	27	3.2	27	79	1	91	38	23	7	30	1.81
46633384--46633439	27	2.1	26	87	9	78	39	12	10	37	1.78
46633480--46633557	27	2.9	27	75	11	88	37	21	19	21	1.95
46634711--46634758	25	1.9	25	86	0	69	37	25	12	25	1.91
46634795--46634856	20	3.2	20	95	2	108	37	12	19	30	1.89
46634911--46635053	23	6.1	23	90	3	223	28	23	20	27	1.99
46634910--46635060	47	3.2	46	89	3	221	29	22	21	26	1.99
46634911--46635049	70	2.0	70	95	0	251	27	23	21	27	1.99
46638098--46638187	27	3.3	27	85	3	119	40	17	10	32	1.83
46638098--46638204	54	2.0	54	81	7	128	38	20	10	30	1.86
46638182--46638242	27	2.3	27	79	0	68	32	27	8	31	1.86
46638193--46638403	27	7.8	27	85	6	223	28	24	8	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46638193--46638405	79	2.6	81	81	8	220	29	23	8	38	1.84
46643417--46643583	40	4.2	40	79	6	169	26	22	26	24	2.00
46651416--46651557	40	3.5	40	83	1	124	27	23	26	22	1.99
46651455--46651583	40	3.2	39	84	6	152	24	22	27	25	2.00
46654209--46654266	31	1.9	30	86	10	82	67	8	3	20	1.33
46655347--46655446	39	2.6	39	82	4	123	37	6	9	48	1.60
46656998--46657204	54	3.8	54	77	5	222	20	24	17	36	1.94
46664442--46664644	53	3.8	54	76	4	203	20	21	19	38	1.94
46666046--46666104	31	1.9	31	92	0	100	23	30	16	28	1.97
46668531--46668583	22	2.4	22	96	0	97	30	5	26	37	1.79
46668732--46669249	259	2.0	259	99	0	1027	27	8	27	35	1.87
46669991--46670040	21	2.4	21	80	9	59	28	12	24	36	1.91
46671272--46671302	2	15.5	2	100	0	62	51	0	0	48	1.00
46675410--46675522	27	4.2	27	87	0	136	28	24	7	38	1.83
46675410--46675522	54	2.1	54	86	0	154	28	24	7	38	1.83
46675525--46675681	27	5.8	26	79	5	152	39	20	10	29	1.86
46675558--46675682	27	4.6	27	84	7	157	40	21	8	29	1.82
46675558--46675794	27	8.7	27	75	9	153	40	19	8	31	1.82
46675558--46675795	54	4.4	53	77	9	185	39	19	8	31	1.82
46675783--46675889	27	3.9	27	75	12	94	38	20	20	20	1.94
46676698--46676791	25	3.8	25	95	1	163	25	26	23	24	2.00
46677010--46677217	31	6.7	31	90	2	303	29	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46680341--46680458	41	3.1	41	60	28	98	32	17	28	21	1.96
46680309--46680472	71	2.3	71	100	0	328	35	17	28	18	1.94
46687919--46688036	41	3.1	41	60	28	98	32	17	28	21	1.96
46687887--46688050	71	2.3	71	100	0	328	35	17	28	18	1.94
46689749--46689915	39	4.3	39	89	0	235	28	28	19	23	1.98
46692293--46692368	15	5.0	15	75	7	55	55	18	14	11	1.69
46699201--46699373	43	4.0	43	94	0	301	30	32	26	10	1.90
46699339--46699400	27	2.3	27	86	8	90	35	33	22	8	1.84
46699367--46699484	38	2.9	41	78	6	107	32	30	22	14	1.94
46699367--46699446	43	1.9	43	84	5	110	32	32	23	11	1.90
46699418--46699525	38	2.8	38	88	1	144	31	25	22	21	1.98
46703908--46704030	45	2.7	45	84	2	149	23	15	28	32	1.95
46703971--46704136	44	3.6	45	81	7	163	22	17	27	31	1.97
46715340--46715369	2	15.0	2	100	0	60	50	0	0	50	1.00
46715824--46715922	28	3.5	29	94	5	168	28	12	27	32	1.92
46718195--46718378	40	4.6	40	82	4	174	28	22	26	23	1.99
46726351--46726460	40	2.8	40	88	0	157	27	22	28	21	1.99
46726305--46726490	40	4.8	38	76	10	155	29	21	26	23	1.99
46741094--46741264	46	3.7	47	79	12	158	23	30	18	28	1.97
46741149--46741355	46	4.4	46	75	14	167	22	28	20	28	1.98
46745094--46745265	93	1.8	93	94	0	308	27	30	21	20	1.98
46745086--46745261	46	3.8	46	81	10	223	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46749299--46749483	40	4.7	40	78	7	173	24	22	27	25	2.00
46749352--46749506	79	2.0	79	81	7	181	26	21	26	25	1.99
46757292--46757475	40	4.7	40	84	8	218	23	21	28	26	1.99
46757292--46757473	78	2.3	80	83	9	221	24	21	28	25	1.99
46764247--46764500	68	3.9	65	77	9	205	25	29	16	29	1.96
46765164--46765224	30	2.0	30	83	0	77	32	22	6	37	1.80
46765382--46765416	18	1.9	18	100	0	70	28	17	28	25	1.97
46766364--46766400	19	2.0	19	89	5	58	27	18	37	16	1.92
46768741--46769016	27	10.2	27	90	0	417	30	23	6	39	1.80
46768752--46769194	27	16.4	27	82	5	169	34	21	7	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427