genome.fa.s11.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  163  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45295701--45295748	25	1.9	25	91	0	78	35	25	14	25	1.94
45295862--45295956	23	4.1	23	91	5	156	28	18	21	31	1.97
45301358--45301426	27	2.6	27	85	0	102	39	20	13	27	1.89
45301411--45301785	27	13.9	27	77	7	235	39	18	10	32	1.84
45301912--45301956	20	2.2	20	84	7	56	22	6	31	40	1.80
45302047--45302288	41	5.9	40	84	3	322	21	21	27	29	1.98
45302047--45302288	82	3.0	82	93	0	412	21	21	27	29	1.98
45302428--45302491	22	3.0	21	84	6	83	23	23	18	34	1.96
45304264--45304314	23	2.4	22	81	12	61	17	5	25	50	1.68
45305386--45305421	17	2.1	17	89	5	54	22	27	36	13	1.92
45305483--45305560	27	2.9	27	82	0	102	35	16	19	28	1.93
45305545--45305612	26	2.6	27	85	4	93	41	19	8	30	1.82
45305553--45305918	27	13.6	26	77	7	234	40	19	9	30	1.83
45308311--45308469	35	4.5	35	74	6	133	30	8	16	44	1.78
45308308--45308469	70	2.3	70	74	4	164	30	9	16	43	1.79
45310910--45310959	24	2.1	24	96	0	91	50	14	10	26	1.73
45312162--45312324	6	26.8	6	73	16	131	48	14	16	20	1.81
45312162--45312321	79	2.0	80	88	7	241	48	14	16	20	1.81
45312442--45312499	27	2.2	27	87	3	82	36	24	24	15	1.94
45312680--45312736	22	2.6	22	80	0	60	31	22	26	19	1.98
45312826--45312908	27	3.1	26	87	5	112	37	21	21	19	1.94
45313107--45313302	27	7.3	27	82	1	214	25	18	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45313106--45313302	54	3.6	54	84	4	245	24	18	20	36	1.95
45313307--45314066	27	28.2	27	84	5	955	40	9	22	27	1.85
45327540--45327665	27	4.7	27	85	1	148	25	14	18	42	1.88
45339565--45339601	18	2.1	18	100	0	74	43	40	16	0	1.48
45341006--45341153	79	1.9	79	81	2	181	25	29	25	20	1.99
45341043--45341195	40	3.8	40	80	0	137	24	29	22	23	1.99
45344134--45344184	3	17.0	3	100	0	102	33	0	0	66	0.92
45345381--45345445	11	6.1	11	68	13	55	3	16	1	78	0.96
45345382--45345432	22	2.3	21	83	6	66	3	17	0	78	0.90
45345381--45345429	16	3.1	17	80	13	52	4	16	0	79	0.88
45345381--45345445	17	3.8	16	74	23	60	3	16	1	78	0.96
45346901--45347037	60	2.3	60	83	8	163	28	19	26	25	1.99
45353648--45353767	40	3.0	40	92	2	199	20	22	28	29	1.98
45353652--45353782	40	3.3	40	86	8	178	21	22	26	29	1.99
45358268--45358484	24	9.0	24	93	2	355	28	21	21	29	1.99
45358268--45358484	73	3.0	73	93	2	357	28	21	21	29	1.99
45358535--45358573	20	2.0	20	100	0	78	30	20	12	35	1.90
45358536--45358580	20	2.2	20	92	0	72	31	22	13	33	1.92
45359085--45359120	8	4.5	8	92	0	63	11	22	22	44	1.84
45360890--45360914	12	2.1	12	100	0	50	56	0	0	44	0.99
45360945--45360988	19	2.4	18	85	7	54	40	9	0	50	1.34
45363199--45363289	39	2.4	39	78	10	89	45	10	2	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45369723--45369911	27	7.1	27	86	2	238	38	21	8	31	1.84
45369722--45370007	53	5.2	52	76	15	254	38	19	10	32	1.85
45369914--45370010	27	3.6	27	86	8	128	37	16	12	34	1.86
45369823--45370004	91	2.0	92	88	5	271	37	17	10	34	1.84
45371607--45371758	27	5.6	27	86	0	205	39	23	7	30	1.81
45371607--45371756	81	1.9	81	92	0	255	40	22	7	30	1.81
45371607--45371784	27	6.6	27	84	1	187	38	23	8	29	1.85
45371611--45371784	81	2.1	81	86	2	242	38	23	9	28	1.86
45371737--45371801	27	2.4	27	89	0	94	36	20	18	24	1.94
45375509--45375548	2	20.0	2	94	0	71	52	0	0	47	1.00
45379499--45379578	29	2.8	28	86	3	115	26	33	16	23	1.95
45379499--45379585	28	3.1	28	85	3	120	26	31	14	27	1.95
45379802--45379840	16	2.4	16	95	0	69	15	17	15	51	1.77
45381769--45381990	40	5.6	40	93	3	353	24	22	26	25	2.00
45389118--45389323	40	5.2	40	95	1	319	22	22	27	28	1.99
45393261--45393477	40	5.4	40	94	3	341	23	22	27	26	1.99
45397451--45397694	40	6.1	40	91	1	357	23	21	28	26	1.99
45399584--45399648	29	2.2	29	97	0	121	29	16	27	26	1.97
45410067--45410234	40	4.2	40	81	4	178	23	27	23	24	2.00
45411870--45412113	40	6.1	40	92	1	366	22	21	28	26	1.99
45414219--45415052	48	17.6	48	95	1	1445	35	7	26	29	1.85
45414219--45415052	287	2.9	286	94	1	1441	35	7	26	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45416530--45416807	40	7.0	40	92	0	459	20	21	30	27	1.98
45416970--45417022	25	2.1	25	82	6	63	37	13	28	20	1.90
45418781--45419480	48	14.6	48	96	0	1220	35	7	27	29	1.84
45420582--45420608	4	6.8	4	100	0	54	77	0	0	22	0.76
45424159--45424330	93	1.8	93	96	0	317	27	29	21	20	1.98
45424152--45424327	46	3.8	46	79	12	216	28	29	21	20	1.98
45431717--45431888	93	1.8	93	96	0	317	27	29	21	20	1.98
45431710--45431885	46	3.8	46	79	12	216	28	29	21	20	1.98
45439249--45439423	44	3.9	44	79	12	210	29	29	20	21	1.98
45439256--45439425	93	1.8	91	94	2	304	28	29	21	21	1.98
45441093--45441238	40	3.7	39	81	9	147	25	25	27	21	2.00
45441129--45441253	40	3.2	39	88	1	178	24	24	27	24	2.00
45449064--45449269	80	2.6	80	82	4	220	25	23	25	25	2.00
45449062--45449269	40	5.2	39	80	5	193	25	23	25	25	2.00
45450631--45450756	55	2.3	55	81	8	141	24	23	18	33	1.97
45455263--45455394	29	4.6	29	82	9	137	26	26	15	31	1.96
45463219--45463350	29	4.6	29	82	9	137	26	26	15	31	1.96
45469599--45469641	22	2.0	22	86	9	61	39	2	9	48	1.48
45469649--45469739	26	3.5	26	82	10	107	45	0	0	54	0.99
45470221--45470341	41	3.5	33	73	24	97	43	0	14	42	1.44
45470246--45470325	41	2.0	41	87	5	117	38	0	18	42	1.51
45470401--45470795	127	3.1	125	83	4	474	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45476424--45476461	15	2.5	15	95	0	67	42	15	7	34	1.76
45478759--45478799	18	2.3	18	91	0	64	7	19	2	70	1.22
45481223--45481253	5	6.2	5	100	0	62	38	19	19	22	1.93
45481988--45482018	9	3.4	9	95	0	53	32	16	12	38	1.86
45486299--45486457	43	3.7	43	74	10	155	30	26	19	23	1.98
45489818--45489945	50	2.7	47	81	11	156	23	28	18	28	1.98
45494680--45494704	13	1.9	13	100	0	50	60	16	0	24	1.36
45498113--45498189	40	1.9	40	100	0	154	54	18	3	23	1.60
45499517--45499630	43	2.7	44	79	8	128	29	23	20	26	1.99
45501632--45501686	27	2.0	27	96	0	101	45	27	7	20	1.77
45502452--45502508	30	1.9	30	82	7	71	24	29	24	21	1.99
45503226--45503293	34	2.0	34	97	0	127	35	10	14	39	1.80
45509033--45509208	46	3.8	46	81	10	232	20	21	29	28	1.98
45509029--45509200	93	1.8	93	96	0	317	20	22	30	27	1.98
45519300--45519383	28	3.0	29	85	3	100	29	29	14	26	1.95
45521305--45521444	47	3.0	47	92	2	219	54	10	5	30	1.56
45521343--45521418	23	3.3	23	68	23	68	56	10	3	28	1.51
45521360--45521430	20	3.2	20	68	24	61	56	9	5	28	1.54
45524533--45524581	8	6.5	8	81	13	59	0	18	0	81	0.69
45524537--45524595	6	9.7	6	77	15	59	0	16	1	81	0.78
45524536--45524595	14	4.3	14	72	19	54	0	16	1	81	0.77
45524533--45524581	4	13.0	4	75	12	50	0	18	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45524533--45524595	18	3.8	16	80	15	65	0	17	1	80	0.78
45527200--45527341	42	3.3	43	78	7	130	23	17	25	33	1.96
45536270--45536368	28	3.5	29	94	5	168	32	27	12	28	1.92
45550229--45550281	20	2.7	20	69	0	52	18	13	33	33	1.90
45554483--45554617	43	3.1	43	77	5	139	21	15	26	36	1.93
45555344--45555387	23	1.9	23	90	0	70	18	4	20	56	1.58
45557942--45557984	20	2.3	19	85	14	63	48	11	11	27	1.74
45557992--45558039	25	1.9	25	91	0	78	33	10	20	35	1.87
45558039--45558205	47	3.6	47	83	1	210	49	11	8	29	1.70
45558728--45558776	24	2.0	24	96	0	89	44	32	4	18	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427