genome.fa.s11.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  149  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40788633--40788898	140	1.9	140	92	1	453	29	27	19	23	1.98
40793670--40793781	40	2.8	40	78	8	120	24	25	27	23	2.00
40804990--40805017	3	9.3	3	100	0	56	67	0	32	0	0.91
40806879--40807024	39	3.8	39	88	2	197	19	17	28	34	1.94
40808648--40808821	45	3.9	45	89	0	267	21	20	30	27	1.98
40817928--40818033	42	2.5	41	87	3	140	31	24	13	31	1.93
40822135--40822163	12	2.3	13	94	5	51	20	6	13	58	1.58
40825964--40825992	15	1.9	15	100	0	58	31	41	0	27	1.56
40826475--40826638	42	3.9	42	85	6	224	32	25	12	29	1.93
40830124--40830162	19	2.1	19	85	9	53	12	10	7	69	1.37
40831528--40831579	23	2.2	23	80	13	61	26	1	5	65	1.26
40831528--40831581	22	2.4	23	77	17	60	25	1	5	66	1.23
40833508--40833557	26	1.9	26	87	0	73	44	8	14	34	1.74
40835418--40835582	83	2.0	84	84	1	215	29	21	14	35	1.93
40836233--40836274	2	21.5	2	95	4	77	47	0	0	52	1.00
40836502--40836647	40	3.7	40	86	3	188	22	26	24	26	2.00
40838264--40838361	29	3.4	28	77	5	88	29	30	16	23	1.96
40844972--40845020	17	2.8	18	74	22	50	24	18	22	34	1.96
40845843--40846009	40	4.2	40	79	6	169	25	21	27	25	1.99
40859805--40859905	28	3.5	28	86	6	114	29	13	26	29	1.94
40866200--40866250	25	2.1	23	80	16	59	37	1	1	58	1.20
40867133--40867172	21	1.9	21	85	10	55	50	17	27	5	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40869272--40869320	22	2.2	22	85	0	62	8	14	46	30	1.73
40871577--40871760	40	4.6	40	81	2	172	28	22	26	22	1.99
40871617--40871798	80	2.3	80	78	5	179	25	23	28	23	1.99
40874264--40874429	83	2.0	83	93	0	287	48	9	18	24	1.77
40874540--40874743	55	3.8	53	74	5	176	21	23	17	38	1.93
40884038--40884126	43	2.0	44	95	2	162	35	25	19	19	1.95
40885559--40885731	46	3.7	47	80	7	169	28	19	28	23	1.98
40896275--40896303	13	2.2	13	100	0	58	13	13	6	65	1.45
40897263--40897288	13	2.0	13	100	0	52	76	0	23	0	0.78
40897931--40898129	65	3.0	67	93	3	330	41	6	5	46	1.53
40898024--40898136	38	3.2	38	60	25	91	41	5	4	48	1.46
40897940--40898143	69	3.0	69	94	2	344	41	6	5	46	1.52
40902023--40902091	28	2.5	28	93	6	115	44	27	8	18	1.79
40903897--40903960	28	2.3	28	88	0	92	21	43	21	12	1.86
40905766--40905807	22	2.0	21	85	4	57	30	7	21	40	1.80
40906258--40906305	17	2.8	17	77	0	51	31	4	16	47	1.65
40913713--40913771	20	3.0	20	89	0	91	38	10	16	33	1.83
40913821--40913941	24	5.0	24	91	4	181	29	20	21	28	1.98
40921971--40922009	20	2.0	20	94	0	69	35	15	17	30	1.91
40922060--40922214	24	6.4	24	90	1	238	30	20	20	28	1.97
40923259--40923308	26	1.9	26	91	0	82	34	20	8	38	1.82
40927037--40927067	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40927034--40927073	20	2.0	20	85	0	53	37	22	0	40	1.54
40927260--40927514	55	4.8	54	78	10	242	22	26	16	34	1.95
40927306--40927507	107	1.9	110	85	7	288	23	26	17	32	1.97
40927850--40927908	30	2.0	30	83	6	75	30	27	3	38	1.73
40930854--40931079	46	4.8	47	77	8	226	29	17	27	25	1.97
40930854--40931079	94	2.4	94	85	1	292	29	17	27	25	1.97
40931100--40931228	49	2.6	50	86	4	172	30	18	27	24	1.98
40937815--40937906	43	2.1	42	84	11	116	27	31	18	22	1.97
40939451--40939534	41	2.0	41	97	0	159	32	20	17	29	1.96
40940908--40941357	27	16.7	27	84	4	532	28	21	8	41	1.83
40940874--40941394	81	6.4	81	80	3	262	29	22	9	39	1.85
40942673--40942749	9	7.9	9	72	16	64	35	9	20	35	1.85
40942682--40942753	11	7.1	11	70	17	66	36	12	19	31	1.89
40942671--40942753	20	4.2	20	96	0	157	36	12	19	32	1.88
40942808--40942975	24	7.0	23	85	7	212	30	22	20	26	1.98
40942808--40942975	47	3.5	47	86	6	214	30	22	20	26	1.98
40943167--40943230	31	2.1	31	87	0	92	35	14	23	26	1.93
40949373--40949443	35	2.0	35	100	0	142	25	8	28	38	1.85
40957328--40957360	14	2.2	16	89	10	52	24	30	3	42	1.70
40966925--40967096	93	1.8	93	96	0	317	27	30	22	20	1.98
40966918--40967098	46	3.9	46	80	9	224	27	30	21	20	1.98
40968879--40968941	31	2.1	30	87	3	90	41	15	20	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40971569--40971920	38	9.3	38	88	2	510	29	26	23	21	1.99
40977605--40977722	41	3.1	41	60	28	98	32	17	28	21	1.96
40977573--40977736	71	2.3	71	100	0	328	35	17	28	18	1.94
40985185--40985302	41	3.1	41	60	28	98	32	17	28	21	1.96
40985153--40985316	71	2.3	71	100	0	328	35	17	28	18	1.94
40987802--40988039	51	4.8	49	84	5	282	24	20	24	30	1.99
40987853--40988050	100	2.0	102	86	4	285	26	20	22	29	1.99
40987856--40988077	100	2.2	102	82	6	238	27	19	24	28	1.98
40996250--40996354	53	2.0	53	83	3	131	23	26	12	37	1.91
41000103--41000189	43	2.0	43	97	0	165	24	26	12	36	1.91
41014202--41014235	18	1.9	18	88	5	52	38	5	14	41	1.70
41016369--41016415	24	2.0	24	95	0	85	42	17	10	29	1.82
41017910--41017995	43	2.0	43	81	0	100	22	19	27	30	1.98
41020374--41020414	2	20.5	2	100	0	82	48	0	0	51	1.00
41021128--41021313	40	4.7	40	86	5	209	25	20	26	26	1.99
41029199--41029344	40	3.7	40	82	9	156	23	21	27	26	1.99
41029199--41029367	80	2.1	80	80	9	186	25	21	26	26	1.99
41029200--41029363	40	4.1	40	80	10	122	25	21	27	25	2.00
41039935--41040020	43	2.0	43	86	0	118	23	20	30	25	1.99
41042282--41042474	39	4.9	39	89	0	242	24	31	20	23	1.98
41042312--41042474	39	4.2	39	92	0	254	25	31	19	23	1.98
41048025--41048217	39	4.9	39	90	0	251	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41048055--41048217	39	4.2	39	93	0	263	24	31	20	23	1.98
41057484--41057584	28	3.5	28	86	6	114	29	26	13	29	1.94
41065400--41065520	63	1.9	63	94	0	215	22	21	17	38	1.93
41071220--41071630	49	8.4	49	93	3	720	33	8	27	30	1.86
41071699--41071790	37	2.4	36	89	8	139	21	18	32	27	1.97
41077773--41077806	3	11.3	3	87	0	50	32	0	5	61	1.20
41081285--41081321	20	1.9	18	89	10	56	54	5	2	37	1.38
41082873--41082929	18	3.1	18	70	5	51	42	7	14	36	1.72
41086900--41087017	41	3.1	41	60	28	98	32	17	28	21	1.96
41086868--41087031	71	2.3	71	100	0	328	35	17	28	18	1.94
41094470--41094587	41	3.1	41	60	28	98	32	17	28	21	1.96
41094438--41094601	71	2.3	71	100	0	328	35	17	28	18	1.94
41097009--41097249	40	6.0	40	95	0	410	19	22	29	27	1.98
41100871--41101209	48	7.0	48	95	1	579	36	6	26	30	1.82
41105164--41105356	27	7.2	26	79	12	187	37	18	11	32	1.87
41105176--41105362	80	2.3	80	82	7	220	36	19	10	33	1.86
41105176--41105356	53	3.4	54	81	6	210	36	19	11	33	1.87
41107479--41107515	11	3.5	11	78	14	51	10	37	29	21	1.88
41107471--41107516	20	2.3	20	100	0	92	10	36	28	23	1.89
41107480--41107523	20	2.2	20	91	0	70	11	40	27	20	1.86
41109128--41109152	12	2.1	12	100	0	50	52	8	0	40	1.31
41109166--41109209	19	2.4	18	85	7	54	40	9	0	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41117608--41117844	27	8.9	27	83	3	257	37	19	10	31	1.86
41117613--41117844	54	4.3	54	84	3	290	37	20	10	31	1.87
41117644--41117883	54	4.4	54	82	5	225	37	20	10	32	1.87
41117608--41117883	81	3.4	80	79	4	270	37	19	10	32	1.86
41117673--41117902	27	8.5	27	79	5	121	37	20	11	30	1.88
41131856--41131899	22	1.9	24	86	9	65	38	11	2	47	1.52
41133655--41133687	12	2.8	12	95	0	57	24	48	18	9	1.76
41137465--41137493	12	2.4	12	100	0	58	34	48	10	6	1.64
41140973--41141003	12	2.6	12	94	0	53	6	19	48	25	1.72
41145888--41145946	31	1.9	31	96	0	109	18	22	37	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427