genome.fa.s11.2.7.7.80.10.50.1000.363.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  363  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105337200--105337234	14	2.5	14	90	0	52	54	8	20	17	1.68
105337305--105337441	73	1.9	73	93	0	238	31	24	18	25	1.98
105338350--105338436	43	2.0	43	90	0	138	16	24	14	44	1.85
105350113--105350169	17	3.4	16	76	21	55	61	3	1	33	1.23
105350113--105350163	19	2.8	18	76	23	54	58	3	1	35	1.28
105350191--105350215	2	12.5	2	100	0	50	52	0	0	48	1.00
105353355--105353466	18	6.6	18	72	12	101	3	31	40	25	1.72
105353353--105353466	51	2.2	51	95	0	201	4	31	39	24	1.75
105354892--105354932	18	2.3	18	86	0	64	24	34	24	17	1.96
105357297--105357335	9	4.2	9	84	15	53	30	2	0	66	1.05
105357283--105357346	29	2.2	29	77	5	67	34	3	0	62	1.11
105357404--105357466	30	2.1	31	90	3	101	30	9	6	53	1.58
105363211--105363240	15	2.0	15	100	0	60	40	6	13	40	1.71
105364990--105365099	26	4.2	26	88	0	175	34	5	23	36	1.78
105376738--105376771	15	2.3	15	94	0	59	20	2	23	52	1.60
105376776--105376828	14	3.8	14	89	0	79	56	7	1	33	1.38
105377253--105377309	15	3.5	15	71	17	51	45	0	3	50	1.18
105377254--105377307	19	3.1	19	69	20	53	46	0	3	50	1.19
105380480--105380507	2	14.0	2	100	0	56	50	0	0	50	1.00
105381637--105381765	44	2.8	45	82	4	152	34	13	24	27	1.93
105389016--105389144	44	2.8	45	82	4	152	34	13	24	27	1.93
105391529--105391582	16	3.4	16	71	5	56	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105399089--105399131	16	2.5	17	81	11	52	55	4	4	34	1.41
105399089--105399137	15	3.0	16	85	8	55	57	4	4	34	1.37
105408394--105408423	8	3.9	8	91	8	53	13	0	0	86	0.57
105409395--105409428	6	5.7	6	85	0	50	79	5	0	14	0.91
105410947--105410985	5	8.0	5	82	5	53	76	0	5	17	0.96
105410947--105410989	19	2.3	18	88	4	59	76	0	4	18	0.95
105411123--105411147	3	8.3	3	100	0	50	68	0	0	32	0.90
105417930--105417960	14	2.2	14	94	0	53	48	12	0	38	1.42
105419019--105419044	5	5.2	5	100	0	52	23	0	0	76	0.78
105419383--105419447	28	2.3	28	100	0	130	44	3	7	44	1.48
105421619--105421670	22	2.4	22	80	6	61	59	30	5	3	1.39
105434167--105434232	26	2.5	26	95	2	114	18	1	7	72	1.15
105435362--105435451	15	5.9	16	76	12	91	54	1	13	31	1.46
105435362--105435451	31	2.9	31	85	4	112	54	1	13	31	1.46
105437924--105437999	14	5.3	14	70	19	50	56	1	7	34	1.37
105438711--105438757	16	3.1	16	76	14	55	48	0	51	0	1.00
105439898--105440013	45	2.6	45	90	2	180	23	29	25	22	1.99
105440230--105440443	54	4.1	54	86	6	289	36	17	17	28	1.93
105441603--105441645	22	1.9	23	85	4	61	46	6	0	46	1.30
105442539--105442579	21	2.0	21	90	0	64	53	0	0	46	1.00
105443569--105443598	3	9.7	3	92	7	51	66	0	0	33	0.92
105451525--105451563	19	2.1	19	85	0	51	48	30	5	15	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105454741--105454784	16	2.8	16	86	10	63	54	2	0	43	1.12
105463942--105464092	53	2.8	53	89	4	214	29	27	16	25	1.97
105468082--105468235	6	25.5	6	78	12	131	61	0	5	31	1.24
105468601--105468644	18	2.4	19	84	7	63	65	0	0	34	0.93
105468605--105468634	13	2.3	13	100	0	60	66	0	0	33	0.92
105471120--105471156	2	18.5	2	94	0	65	51	0	0	48	1.00
105472731--105472798	21	3.3	21	69	19	70	57	2	26	13	1.50
105472724--105472807	41	2.0	41	100	0	168	55	2	23	17	1.53
105473150--105473174	8	3.1	8	100	0	50	24	0	0	76	0.80
105481571--105481605	8	4.4	8	88	0	52	45	14	20	20	1.85
105481576--105481613	16	2.4	16	95	0	67	44	15	23	15	1.85
105481939--105481993	3	18.7	3	96	3	103	32	0	0	67	0.91
105482020--105482063	21	2.2	20	84	12	54	81	9	9	0	0.87
105482513--105482537	11	2.3	11	100	0	50	52	0	20	28	1.47
105487355--105487420	22	3.0	22	75	2	62	50	18	21	10	1.77
105490086--105490139	21	2.6	21	97	2	101	37	22	0	40	1.54
105496530--105496577	26	1.9	24	87	8	69	66	6	0	27	1.15
105500482--105500533	26	2.1	24	89	7	77	32	3	3	59	1.33
105500485--105500545	26	2.4	24	79	15	68	34	3	3	59	1.30
105501418--105501531	14	7.9	14	71	18	74	25	7	1	64	1.30
105501418--105501531	29	4.0	28	69	17	81	25	7	1	64	1.30
105501419--105501531	58	1.9	58	80	7	131	25	7	1	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105501662--105501723	25	2.5	24	75	17	63	33	9	0	56	1.32
105503799--105503855	29	2.0	29	86	6	80	56	3	0	40	1.17
105506114--105506153	2	19.5	2	84	5	53	0	45	7	47	1.31
105508768--105508793	4	6.5	4	100	0	52	76	23	0	0	0.78
105514673--105514743	21	3.4	21	67	17	58	43	1	1	53	1.18
105515494--105515567	12	6.1	11	75	18	58	58	4	1	36	1.26
105517817--105517891	34	2.2	35	85	7	109	60	4	8	28	1.43
105520295--105520441	39	3.8	39	87	0	195	36	12	10	40	1.78
105520345--105520412	21	3.4	19	72	12	57	32	10	13	44	1.77
105520328--105520428	18	5.3	18	69	13	67	36	12	9	40	1.77
105523100--105523219	50	2.4	50	87	6	172	36	14	23	25	1.92
105523203--105523365	31	5.2	32	88	5	237	29	17	26	26	1.98
105523203--105523365	62	2.6	62	93	1	265	29	17	26	26	1.98
105526061--105526276	46	4.7	46	90	0	306	39	15	24	21	1.91
105531354--105531569	46	4.7	46	91	0	315	39	15	23	21	1.91
105531304--105531569	138	2.0	130	87	5	379	39	15	23	21	1.92
105532251--105532415	47	3.7	46	80	6	142	29	15	25	29	1.96
105532345--105532459	42	2.7	43	89	4	171	30	14	26	27	1.95
105533669--105533751	40	2.1	40	97	0	157	28	31	2	37	1.70
105535561--105535611	23	2.2	23	83	13	61	31	11	1	54	1.47
105536154--105536193	21	1.9	21	85	10	55	67	0	5	27	1.11
105536929--105537144	107	2.0	108	96	0	398	43	5	9	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105549074--105549170	44	2.2	44	82	10	117	26	21	18	32	1.97
105548998--105549626	177	3.5	177	91	0	1006	28	23	18	29	1.97
105561901--105561957	29	2.0	28	83	10	71	61	3	8	26	1.42
105565908--105565946	20	2.1	19	90	9	62	38	20	0	41	1.53
105565841--105565951	57	2.0	53	81	16	127	34	24	0	41	1.55
105566656--105566716	27	2.3	27	83	11	72	18	8	3	70	1.26
105570788--105570895	26	4.2	26	93	0	189	36	24	7	32	1.83
105572764--105572801	16	2.3	17	81	4	51	42	7	7	42	1.63
105576425--105576452	13	2.2	13	100	0	56	42	7	7	42	1.59
105578794--105578879	5	16.4	5	70	17	50	72	3	20	3	1.15
105578794--105578879	16	5.5	15	70	13	57	72	3	20	3	1.15
105578794--105578835	14	2.8	16	82	10	52	73	4	16	4	1.17
105578795--105578876	22	3.9	22	75	12	66	71	3	20	3	1.16
105578795--105578867	10	7.1	10	73	17	60	71	4	20	4	1.20
105580907--105580945	20	1.9	21	89	5	62	30	2	15	51	1.57
105584907--105584952	19	2.4	19	96	0	83	36	0	23	39	1.55
105586917--105587067	53	2.8	53	89	4	214	25	16	27	29	1.97
105602127--105602171	2	23.0	2	95	4	83	48	0	0	51	1.00
105602181--105602232	25	2.1	25	85	0	68	38	13	11	36	1.81
105605696--105605784	42	2.1	42	91	0	142	21	12	19	47	1.82
105607312--105607349	18	2.1	19	90	5	60	52	5	0	42	1.24
105631007--105631047	16	2.7	16	88	7	59	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105631926--105631964	21	1.9	20	89	5	60	35	2	10	51	1.50
105632451--105632495	22	2.1	21	84	12	56	53	2	15	28	1.54
105632597--105632642	7	6.6	7	97	0	83	28	15	41	15	1.87
105633692--105633723	3	10.7	3	100	0	64	0	0	68	31	0.90
105637091--105637149	22	2.7	21	84	7	73	37	3	18	40	1.68
105644922--105645031	13	8.5	13	70	0	76	32	20	3	42	1.70
105644928--105645027	39	2.6	39	93	0	164	34	20	4	42	1.70
105646715--105646764	21	2.4	21	86	0	73	16	34	36	14	1.88
105648023--105648088	25	2.7	24	80	2	78	34	22	18	24	1.96
105648609--105648637	9	3.2	9	100	0	58	34	10	0	55	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427