genome.fa.s11.2.7.7.80.10.50.1000.245.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  245  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69714899--69714953	29	1.9	28	88	3	83	18	23	23	34	1.96
69718295--69718368	38	2.0	37	81	2	85	22	21	27	28	1.99
69723203--69723410	40	5.2	40	81	2	213	25	21	26	26	1.99
69730920--69731127	40	5.2	40	83	2	240	25	21	26	26	1.99
69737290--69737325	2	18.0	2	100	0	72	50	50	0	0	1.00
69739130--69739177	23	2.1	23	100	0	96	52	14	8	25	1.69
69741488--69741533	10	4.7	10	89	2	58	54	0	0	45	0.99
69741505--69741535	2	15.5	2	100	0	62	51	0	0	48	1.00
69741798--69741858	30	2.1	27	85	8	77	55	3	6	34	1.42
69743553--69743792	45	5.4	43	77	5	185	27	21	20	30	1.98
69743782--69744676	177	5.1	177	83	2	1104	27	25	17	29	1.98
69744138--69744230	42	2.2	44	84	3	118	27	25	16	30	1.96
69743782--69744676	174	5.1	174	82	3	1040	27	25	17	29	1.98
69745898--69745954	7	8.3	7	79	11	55	12	7	0	80	0.89
69745888--69745953	14	5.1	12	77	15	60	12	6	0	81	0.85
69749135--69749179	22	2.0	22	100	0	90	26	17	37	17	1.93
69755464--69755502	18	2.2	18	86	9	53	61	0	7	30	1.24
69755770--69755807	18	2.1	18	95	0	67	42	2	21	34	1.67
69763690--69763838	80	1.9	80	81	2	183	22	30	24	22	1.99
69763731--69763838	40	2.7	38	85	8	128	21	29	25	23	1.99
69771785--69771933	80	1.9	80	81	2	183	22	30	24	22	1.99
69771826--69771933	40	2.7	38	85	8	128	21	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69773975--69774154	40	4.5	40	79	4	175	26	23	25	25	2.00
69773976--69774154	80	2.2	81	82	3	209	26	23	25	24	2.00
69781441--69781918	49	9.9	48	94	2	775	34	9	27	28	1.88
69781495--69781571	22	3.3	22	65	25	59	32	11	27	28	1.92
69781441--69781918	96	4.9	96	94	2	764	34	9	27	28	1.88
69781910--69782061	48	3.2	48	98	0	286	33	5	28	32	1.81
69782101--69782190	37	2.4	37	94	3	155	23	18	32	25	1.97
69785662--69785799	40	3.4	40	88	1	195	26	23	26	23	2.00
69786264--69786488	124	1.8	124	85	1	317	31	11	23	34	1.89
69786483--69786612	40	3.2	40	82	4	165	23	24	28	23	2.00
69786445--69786612	80	2.1	80	81	6	198	25	23	27	23	2.00
69794308--69794530	124	1.8	122	85	3	313	30	10	23	34	1.89
69794525--69794654	40	3.2	40	82	4	165	23	24	28	23	2.00
69794487--69794654	80	2.1	80	81	6	198	25	23	27	23	2.00
69796529--69796663	29	4.7	29	92	0	216	31	15	22	29	1.95
69798116--69798227	40	2.8	40	81	8	113	26	25	25	21	1.99
69803777--69803959	24	7.6	24	97	0	312	20	17	25	36	1.94
69803777--69803981	48	4.3	48	92	1	304	21	17	24	35	1.95
69817056--69817124	34	2.0	34	91	5	113	42	10	17	30	1.82
69828676--69828735	30	2.0	30	87	6	86	28	25	6	40	1.80
69831195--69831233	20	2.0	20	100	0	78	35	12	20	30	1.90
69831284--69831476	24	8.0	24	88	2	271	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69831284--69831476	73	2.7	74	85	7	270	30	21	20	27	1.98
69836484--69836668	40	4.7	40	88	6	236	25	22	27	24	2.00
69836484--69836701	80	2.7	78	80	10	237	27	21	26	24	1.99
69844559--69844744	40	4.6	41	85	7	215	25	20	26	26	1.99
69850708--69850755	25	1.9	25	86	0	69	29	22	20	27	1.99
69850799--69850837	20	2.0	20	100	0	78	35	12	20	30	1.90
69850887--69851137	24	10.4	24	90	0	376	29	21	20	28	1.98
69854393--69854576	40	4.6	39	75	6	138	26	23	27	22	2.00
69862480--69862526	20	2.3	20	96	0	85	34	10	21	34	1.88
69862576--69862724	24	6.2	24	92	1	244	32	20	18	28	1.96
69862576--69862730	49	3.2	49	90	1	258	32	20	19	28	1.97
69863772--69863796	2	12.5	2	100	0	50	52	0	0	48	1.00
69871461--69871561	28	3.5	29	83	6	116	30	25	13	29	1.94
69873665--69873880	47	4.6	48	81	8	232	22	31	19	26	1.98
69873669--69873929	47	5.6	45	77	14	221	22	30	19	27	1.98
69874243--69874301	30	2.0	30	89	0	91	27	27	15	30	1.96
69876899--69876950	27	1.9	27	84	0	68	44	17	5	32	1.72
69886136--69886206	29	2.4	29	85	0	88	25	30	16	26	1.97
69889649--69889719	32	2.2	32	83	11	94	35	16	22	25	1.95
69889723--69889803	22	3.7	21	85	3	99	37	25	22	14	1.93
69890209--69890263	27	2.0	27	85	0	74	30	14	18	36	1.91
69891734--69891779	24	1.9	24	81	0	56	17	36	4	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69893666--69893750	22	4.0	22	72	4	75	34	22	27	16	1.95
69893775--69893857	43	1.9	43	90	0	130	25	30	20	24	1.99
69894149--69894234	27	3.2	27	88	0	118	27	6	26	38	1.82
69902364--69902613	40	6.2	40	91	1	385	22	28	24	25	1.99
69910469--69910718	40	6.2	40	91	1	385	22	28	24	25	1.99
69915309--69915438	40	3.2	40	82	2	172	24	27	23	24	2.00
69915325--69915475	40	3.8	39	81	6	153	22	27	23	27	1.99
69915309--69915475	80	2.1	79	83	7	205	23	26	22	26	2.00
69918855--69919049	50	3.9	50	82	1	248	29	16	29	24	1.96
69926855--69926917	28	2.3	27	89	5	99	19	7	28	44	1.78
69926867--69926921	28	2.0	28	100	0	110	18	7	25	49	1.73
69928543--69928580	20	1.9	20	88	0	58	52	10	2	34	1.50
69947968--69948104	71	1.9	71	92	0	229	32	32	22	13	1.92
69948039--69948153	43	2.7	43	85	2	144	34	30	21	13	1.91
69948139--69948255	38	3.1	38	88	3	155	27	25	23	23	2.00
69951895--69951975	28	3.0	27	85	3	108	24	14	19	40	1.90
69951895--69951975	27	3.0	28	87	3	112	24	14	19	40	1.90
69952192--69952236	23	1.9	24	90	4	74	22	2	51	24	1.60
69953220--69953457	50	4.9	49	84	4	293	22	31	19	26	1.98
69953220--69953490	50	5.6	49	78	13	260	23	30	19	26	1.98
69963683--69963743	30	2.0	30	90	0	95	29	24	8	37	1.84
69965185--69965451	48	5.6	48	82	3	322	28	29	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69973686--69973813	37	3.4	37	95	1	229	25	32	17	23	1.97
69973853--69973956	48	2.2	48	98	0	199	32	27	5	33	1.81
69973948--69974110	49	3.4	48	89	5	258	28	28	7	34	1.85
69974095--69974126	9	3.8	9	84	16	50	31	31	0	37	1.58
69974044--69974175	65	2.0	65	100	0	264	28	27	7	36	1.84
69974093--69974126	16	2.1	16	100	0	68	29	29	0	41	1.57
69973947--69974250	161	1.9	162	93	2	522	29	27	8	34	1.87
69974109--69974250	49	2.9	49	97	0	266	29	26	9	34	1.88
69973998--69974224	114	2.0	112	95	1	409	29	27	7	35	1.85
69978017--69978317	40	7.6	40	83	6	274	26	27	20	25	1.99
69980218--69980308	37	2.4	37	96	1	164	25	32	18	23	1.97
69980348--69980451	48	2.2	48	98	0	199	32	27	5	33	1.81
69980441--69980824	96	4.0	95	95	2	619	29	27	9	34	1.88
69980443--69980825	49	8.0	48	95	2	648	29	27	9	33	1.88
69986112--69986305	98	2.0	100	87	4	286	26	13	21	39	1.90
69987650--69987731	42	1.9	43	87	2	121	32	24	15	26	1.95
69994978--69995128	43	3.5	42	80	7	135	28	27	18	25	1.98
69994978--69995126	42	3.5	43	77	9	144	28	27	18	26	1.98
69996729--69996858	65	2.0	65	98	0	251	40	6	16	36	1.73
69998582--69998711	65	2.0	65	100	0	260	41	6	15	36	1.72
70004132--70004164	3	11.0	3	100	0	66	66	0	0	33	0.92
70004738--70004787	17	2.7	18	75	24	50	28	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70004732--70004784	20	2.7	19	82	8	70	32	1	0	66	1.03
70004956--70004997	16	2.5	17	76	3	50	66	2	7	23	1.28
70006326--70006359	10	3.5	10	96	4	61	32	0	0	67	0.91
70007070--70007094	10	2.5	10	100	0	50	84	0	0	16	0.63
70010589--70010762	46	3.8	45	76	14	167	23	29	20	27	1.99
70013556--70013591	18	2.0	18	88	0	54	33	16	5	44	1.71
70019335--70019415	37	2.2	37	93	0	135	24	32	22	20	1.98
70019573--70019698	48	2.6	48	88	0	180	30	26	7	35	1.85
70022566--70022735	46	3.6	46	80	9	132	24	28	18	28	1.98
70022614--70022785	46	3.7	46	80	13	158	23	28	19	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427