genome.fa.s11.2.7.7.80.10.50.1000.423.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  423  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123191263--123191368	53	2.0	53	90	0	167	8	42	5	43	1.58
123193248--123193272	2	12.5	2	100	0	50	48	0	0	52	1.00
123194365--123194391	12	2.2	12	100	0	54	7	0	33	59	1.25
123194593--123194657	32	2.0	32	93	0	112	52	7	23	16	1.70
123195007--123195039	2	16.5	2	100	0	66	48	0	0	51	1.00
123198857--123198889	17	1.9	17	100	0	66	36	0	0	63	0.95
123199061--123199154	44	2.1	44	88	4	134	35	26	5	32	1.79
123199136--123199191	16	3.5	16	92	0	94	28	30	7	33	1.84
123199594--123199619	1	26.0	1	100	0	52	100	0	0	0	0.00
123208574--123208634	30	2.0	30	96	0	113	19	19	11	49	1.78
123214499--123214549	21	2.4	21	83	3	57	45	0	5	49	1.26
123214896--123214924	11	2.5	12	94	5	51	86	0	13	0	0.58
123214896--123214924	6	5.0	6	91	8	51	86	0	13	0	0.58
123229956--123229996	21	2.0	21	90	0	64	19	29	21	29	1.98
123237596--123237643	20	2.4	20	82	0	60	29	18	25	27	1.98
123240826--123240896	31	2.3	31	85	0	97	50	5	4	39	1.45
123245234--123245277	20	2.2	20	84	8	54	50	2	0	47	1.13
123246083--123246240	77	2.1	77	95	0	280	39	15	1	43	1.57
123246912--123246995	41	2.0	41	95	0	150	21	13	30	34	1.91
123247109--123247141	16	2.0	17	88	5	50	30	0	0	69	0.88
123256537--123256585	23	2.1	24	84	3	64	61	6	2	30	1.32
123259311--123259338	5	5.6	5	100	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123262642--123262718	21	3.6	21	80	5	84	48	16	22	12	1.80
123267945--123267978	16	2.1	16	88	0	50	35	0	0	64	0.94
123267865--123268009	78	1.8	78	81	10	179	35	6	6	52	1.52
123269414--123269445	17	1.9	17	93	6	57	75	3	21	0	0.95
123271507--123271563	24	2.2	27	81	9	66	36	5	1	56	1.32
123280631--123280680	22	2.3	22	89	3	75	32	10	20	38	1.85
123295695--123295775	40	2.0	40	100	0	162	33	14	2	49	1.57
123296367--123296426	19	3.3	18	71	17	52	40	11	1	46	1.50
123298576--123298602	2	13.5	2	100	0	54	48	0	0	51	1.00
123306800--123306850	27	1.9	26	84	4	66	50	0	5	43	1.26
123313136--123313191	26	2.2	26	90	0	85	14	14	14	57	1.66
123314428--123314481	27	2.0	27	100	0	108	25	11	18	44	1.83
123315012--123315701	238	2.9	239	92	2	1154	32	22	12	32	1.91
123315785--123315832	24	2.0	24	100	0	96	29	20	20	29	1.98
123324753--123324785	2	16.5	2	100	0	66	48	0	0	51	1.00
123327237--123327280	23	1.9	23	81	9	54	52	2	13	31	1.53
123354038--123354070	2	16.5	2	100	0	66	48	0	0	51	1.00
123354698--123354771	24	2.9	24	76	15	69	43	0	1	55	1.08
123360743--123360780	18	2.1	19	90	5	60	44	2	0	52	1.14
123362161--123362215	23	2.3	23	84	6	65	41	0	1	56	1.10
123367591--123367810	110	2.0	110	100	0	440	42	14	9	33	1.77
123368852--123368880	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123369205--123369266	30	2.1	30	84	6	81	50	1	4	43	1.33
123371985--123372015	15	2.0	16	93	6	55	45	0	0	54	0.99
123374641--123375070	218	2.0	219	93	0	736	42	16	17	23	1.89
123375020--123375083	32	2.0	32	87	0	92	57	18	15	7	1.62
123376775--123376809	18	1.9	18	88	0	52	40	2	2	54	1.30
123377826--123377862	14	2.6	15	83	8	51	40	0	2	56	1.13
123379169--123379224	24	2.3	24	81	0	67	14	37	28	19	1.91
123379768--123379810	21	2.0	21	100	0	86	41	4	4	48	1.44
123382410--123382449	19	2.1	19	86	9	55	37	7	0	55	1.29
123383870--123383913	23	1.9	23	100	0	88	29	18	6	45	1.75
123395252--123395402	53	2.8	53	89	4	214	29	27	16	25	1.97
123402689--123402839	53	2.8	53	89	4	214	29	27	16	25	1.97
123404532--123404702	92	1.9	92	85	4	238	20	23	12	42	1.87
123404522--123404703	46	4.0	46	84	1	213	20	23	14	41	1.89
123408041--123408079	20	1.9	21	84	5	53	53	0	10	35	1.35
123413282--123413362	42	1.9	42	94	0	144	58	8	28	4	1.49
123414146--123414278	47	2.8	47	95	0	239	25	13	21	39	1.90
123417939--123418015	38	2.0	38	100	0	154	29	5	31	33	1.80
123419034--123419095	28	2.2	28	91	0	106	38	9	22	29	1.86
123420609--123420644	13	2.8	14	84	16	51	27	25	0	47	1.52
123420596--123420636	18	2.2	19	87	12	59	29	24	0	46	1.53
123420759--123420893	39	3.4	38	73	8	101	28	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123421133--123421171	18	2.1	19	90	4	62	48	10	0	41	1.37
123421525--123421581	5	11.0	5	78	14	62	56	1	0	42	1.10
123421524--123421579	12	4.5	12	81	16	69	55	1	0	42	1.10
123421526--123421581	26	2.2	26	90	6	69	55	1	0	42	1.10
123423545--123423618	18	4.0	18	75	5	67	40	2	0	56	1.13
123423544--123423618	5	14.8	5	71	12	55	41	2	0	56	1.13
123424398--123424443	23	2.0	24	82	4	58	28	15	4	52	1.61
123424704--123425012	46	6.7	47	92	1	414	20	24	14	39	1.91
123424704--123425107	92	4.5	93	86	6	501	21	24	14	38	1.91
123424783--123424858	25	3.2	25	62	27	65	17	25	15	42	1.88
123424704--123425106	138	3.0	137	87	3	534	21	24	14	38	1.91
123424973--123425097	38	3.1	39	80	17	171	24	25	16	34	1.95
123424936--123425096	84	1.9	84	98	0	313	24	26	14	34	1.94
123425013--123425106	46	2.0	46	97	0	179	24	25	13	36	1.93
123427174--123427223	23	2.1	24	85	3	66	60	4	2	34	1.27
123429434--123429562	44	2.8	45	82	4	152	34	13	24	27	1.93
123434456--123434635	46	3.9	46	84	1	207	39	13	25	21	1.90
123437225--123437266	18	2.4	17	88	11	59	47	0	9	42	1.36
123443287--123443332	20	2.3	20	96	0	83	17	15	30	36	1.91
123443628--123443678	25	2.0	25	100	0	102	41	19	3	35	1.70
123443886--123443946	30	2.0	31	87	3	88	40	4	0	54	1.22
123443894--123443942	21	2.3	22	82	3	55	42	6	0	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123443894--123443937	22	2.0	22	82	8	54	40	6	0	52	1.28
123446903--123446956	20	2.7	20	69	11	56	38	5	7	48	1.55
123448819--123448997	56	3.2	56	99	0	351	41	3	3	50	1.37
123456641--123456686	23	2.0	23	100	0	92	52	26	8	13	1.69
123463934--123464367	154	2.8	152	78	9	414	46	8	6	38	1.61
123465982--123466021	16	2.3	18	87	8	57	65	5	2	27	1.27
123465979--123466021	18	2.3	18	84	4	50	67	4	2	25	1.22
123489771--123489839	30	2.3	30	94	0	120	28	49	5	15	1.68
123491703--123491755	5	10.0	5	80	11	61	41	0	1	56	1.10
123491700--123491756	8	6.6	9	74	22	59	43	0	1	54	1.10
123491701--123491756	12	4.5	12	81	16	69	42	0	1	55	1.10
123493072--123493110	18	2.1	19	90	4	62	41	0	10	48	1.37
123493349--123493483	39	3.4	39	74	6	112	23	20	28	28	1.99
123493606--123493646	19	2.2	19	87	12	59	46	0	24	29	1.53
123498153--123498205	5	10.0	5	80	11	61	41	0	1	56	1.10
123498150--123498206	8	6.6	9	74	22	59	43	0	1	54	1.10
123498151--123498206	12	4.5	12	81	16	69	42	0	1	55	1.10
123499523--123499561	18	2.1	19	90	4	62	41	0	10	48	1.37
123499800--123499934	39	3.4	39	74	6	112	23	20	28	28	1.99
123500057--123500097	19	2.2	19	87	12	59	46	0	24	29	1.53
123502495--123502585	30	3.0	30	88	0	137	21	6	43	27	1.77
123503457--123503518	30	2.1	30	90	0	97	38	29	11	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123503416--123503571	84	1.9	83	91	1	258	36	21	13	28	1.91
123503487--123503606	53	2.2	53	89	1	186	41	15	14	29	1.85
123503585--123503619	14	2.6	14	90	4	54	51	5	14	28	1.65
123503638--123504879	72	16.6	73	83	8	1235	32	18	17	31	1.94
123503638--123504873	366	3.3	367	85	6	1487	32	18	17	31	1.94
123512299--123512361	30	2.1	30	84	0	81	25	6	39	28	1.80
123513280--123513332	26	2.0	26	100	0	106	50	22	11	15	1.75
123513974--123514558	174	3.4	171	80	8	646	38	22	12	26	1.90
123519581--123519639	28	2.1	29	96	3	111	74	16	5	3	1.13
123519594--123519679	38	2.4	35	84	5	109	80	9	5	4	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427