genome.fa.s11.2.7.7.80.10.50.1000.365.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 124536837 
Parameters: 2 7 7 80 10 50 1000
Length:  124536837

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427   

This is table  365  of  427  ( 51162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105925134--105925192	30	2.0	30	86	6	84	33	10	27	28	1.89
105925613--105925786	47	3.7	47	80	12	214	22	20	27	29	1.98
105931560--105931592	12	2.8	12	90	0	57	33	42	3	21	1.68
105935363--105935408	22	2.1	22	100	0	92	8	19	0	71	1.11
105936153--105936227	24	3.2	22	72	17	69	29	8	2	60	1.39
105936153--105936307	49	3.2	47	80	10	170	29	8	2	60	1.40
105936178--105936611	25	17.2	25	70	18	165	29	6	3	60	1.37
105936204--105936313	48	2.3	48	84	6	134	29	7	3	60	1.41
105936297--105936611	26	12.3	26	74	9	238	30	4	3	61	1.33
105936295--105936441	76	1.9	77	84	6	201	29	2	3	64	1.23
105936295--105936461	76	2.2	77	82	6	198	29	3	3	63	1.28
105937948--105938034	41	2.2	41	87	4	124	32	24	20	22	1.98
105937988--105938126	72	1.9	72	82	5	174	33	24	15	26	1.95
105938060--105938168	41	2.7	40	82	5	137	33	23	17	25	1.96
105938451--105938526	28	2.7	28	78	11	75	50	22	0	27	1.50
105941418--105941447	14	2.1	15	93	6	53	50	13	0	36	1.42
105944868--105945778	370	2.5	372	99	0	1790	35	15	10	38	1.82
105945865--105945932	24	2.8	24	86	8	102	27	19	7	45	1.76
105946109--105946164	15	3.8	15	80	20	73	46	0	0	53	1.00
105946269--105946494	9	24.6	9	76	8	143	47	12	0	38	1.48
105946269--105946494	18	12.3	18	75	9	161	47	12	0	38	1.48
105946297--105946518	114	1.9	114	86	3	313	47	12	0	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105952136--105952186	21	2.4	21	80	0	66	29	19	49	1	1.60
105952579--105952781	42	4.8	43	90	4	315	23	31	19	25	1.98
105953987--105954040	24	2.2	24	93	0	90	16	27	22	33	1.95
105953999--105954062	24	2.6	24	82	2	74	21	28	18	31	1.97
105953997--105954077	25	3.3	24	76	8	74	20	27	19	32	1.97
105956227--105956321	40	2.5	38	77	13	104	17	9	33	38	1.82
105962657--105962690	17	1.9	18	94	5	61	11	23	47	17	1.81
105965331--105965367	17	2.1	19	85	10	51	29	0	8	62	1.24
105965326--105965367	23	1.9	21	85	9	57	28	0	9	61	1.27
105965677--105965739	32	2.0	32	96	0	117	26	17	19	36	1.94
105973671--105973702	7	4.6	7	100	0	64	0	12	0	87	0.54
105981659--105981699	2	20.5	2	100	0	82	51	0	0	48	1.00
105982774--105982807	17	2.0	17	88	0	50	44	0	2	52	1.16
105983244--105983272	14	2.0	15	93	6	51	55	6	13	24	1.63
105998487--105998609	44	2.7	45	82	5	140	33	14	23	28	1.94
106000732--106000756	12	2.1	12	100	0	50	60	0	0	40	0.97
106003726--106003774	21	2.3	21	83	16	66	44	2	0	53	1.12
106012872--106013039	40	4.2	40	83	5	189	27	27	21	23	1.99
106012872--106013039	80	2.1	80	85	4	223	27	27	21	23	1.99
106014780--106014824	18	2.3	18	85	11	54	20	11	26	42	1.85
106016033--106016085	26	2.0	26	96	0	97	28	15	16	39	1.89
106020093--106020126	18	1.9	17	94	5	59	55	2	0	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106020536--106020585	26	1.9	26	84	8	66	60	0	2	38	1.09
106023059--106023099	16	2.4	18	80	19	52	53	0	7	39	1.29
106023330--106023384	20	2.7	20	88	2	83	65	3	5	25	1.31
106025306--106025995	44	15.2	44	70	9	364	27	22	20	30	1.98
106025532--106025882	140	2.5	140	90	0	540	26	21	18	33	1.96
106026060--106026187	64	2.0	64	95	0	229	34	16	18	30	1.93
106030556--106030597	19	2.2	19	87	8	59	42	9	23	23	1.83
106033292--106033324	3	11.0	3	100	0	66	66	0	0	33	0.92
106034604--106035084	265	1.8	266	82	4	621	26	23	18	32	1.97
106034974--106035381	146	2.8	146	89	1	604	25	25	19	28	1.99
106035540--106035643	45	2.3	45	83	4	122	29	17	21	31	1.96
106035240--106035592	175	2.0	177	84	4	464	28	23	19	29	1.98
106035818--106036073	64	4.0	64	95	0	458	36	13	18	31	1.90
106035945--106036045	22	4.7	22	64	31	58	36	11	18	32	1.88
106041123--106041153	2	15.5	2	100	0	62	51	0	0	48	1.00
106041817--106041909	39	2.4	39	85	3	134	30	19	26	23	1.98
106041902--106042117	39	5.5	39	88	1	315	20	22	28	28	1.99
106041862--106042134	117	2.3	118	84	4	354	21	21	28	28	1.99
106047863--106047911	3	16.0	3	78	4	53	63	4	4	28	1.31
106050548--106050676	50	2.5	51	93	2	224	34	17	22	25	1.95
106050652--106050769	31	3.8	31	90	0	182	26	19	27	26	1.99
106050791--106051058	49	5.7	49	84	7	276	28	14	26	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106050966--106051093	42	3.0	42	86	5	170	31	14	25	28	1.94
106053757--106053781	4	6.2	4	100	0	50	76	0	0	24	0.80
106056473--106056682	64	3.2	64	62	21	142	30	26	17	26	1.97
106056439--106056724	136	2.1	137	96	0	520	31	24	18	25	1.98
106058511--106058670	26	6.2	26	96	0	284	36	24	8	31	1.85
106059245--106059359	31	3.7	31	95	0	194	25	20	28	25	1.99
106059381--106059613	49	4.8	49	87	4	280	27	12	27	31	1.93
106059471--106059683	49	4.7	43	85	6	173	28	13	27	30	1.94
106064928--106064954	14	1.9	14	100	0	54	22	18	7	51	1.70
106066807--106066859	21	2.5	23	73	14	60	37	3	13	45	1.61
106068537--106068570	14	2.4	14	95	0	59	44	14	29	11	1.81
106068552--106068668	51	2.3	51	95	0	207	33	11	23	30	1.91
106073238--106073282	20	2.2	20	88	0	63	35	13	4	46	1.63
106076827--106076875	24	2.0	24	100	0	98	36	12	26	24	1.91
106077189--106077228	21	1.9	21	100	0	80	25	20	20	35	1.96
106090617--106090662	15	3.2	15	82	11	53	39	0	0	60	0.97
106090633--106090680	20	2.4	19	83	13	53	37	0	2	60	1.09
106101258--106101335	31	2.5	31	85	0	102	39	8	14	37	1.77
106106043--106106073	15	2.1	15	100	0	62	22	38	12	25	1.90
106108146--106108175	15	2.0	15	93	0	51	50	0	10	40	1.36
106108948--106108986	17	2.2	18	86	9	53	25	10	5	58	1.51
106114590--106114656	7	9.4	7	72	18	50	19	2	0	77	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106114589--106114656	14	4.8	13	78	21	59	20	2	0	76	0.92
106114589--106114648	20	2.9	19	83	16	68	20	3	0	76	0.92
106114605--106114656	15	3.3	15	77	17	52	21	1	0	76	0.87
106116074--106116103	15	2.0	15	93	0	51	50	0	10	40	1.36
106117136--106117178	17	2.3	19	88	11	63	65	0	0	34	0.93
106118222--106118283	21	2.7	22	78	12	63	43	1	0	54	1.09
106118232--106118286	18	2.9	18	78	5	56	45	1	0	52	1.11
106124459--106124491	2	16.5	2	100	0	66	48	0	0	51	1.00
106128394--106128451	30	1.9	31	86	10	84	43	6	13	36	1.71
106128811--106128864	21	2.6	21	85	2	65	12	12	0	74	1.08
106128833--106128873	20	2.0	20	95	0	73	9	9	2	78	1.06
106145535--106145575	18	2.2	18	86	8	55	68	0	2	29	1.03
106147822--106147862	2	21.0	2	95	5	75	48	0	0	51	1.00
106148269--106148340	34	2.1	34	100	0	144	33	8	19	38	1.82
106149106--106149723	264	2.3	264	81	1	677	29	17	17	35	1.93
106149142--106149712	132	4.3	132	76	7	419	29	17	16	36	1.92
106152961--106153009	25	2.0	25	88	8	73	53	6	6	34	1.51
106157268--106157303	17	2.1	18	89	5	56	66	0	0	33	0.92
106157598--106157686	19	4.8	19	86	8	130	37	14	10	38	1.80
106157598--106157677	35	2.2	35	88	6	115	37	13	11	37	1.81
106158038--106158192	45	3.5	45	84	3	197	24	27	14	33	1.94
106158206--106158669	78	5.8	78	84	9	610	25	24	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106158152--106158670	247	2.1	248	93	0	887	25	23	18	32	1.97
106167285--106167314	15	2.0	15	93	0	51	20	23	13	43	1.86
106168908--106168987	36	2.2	36	89	8	119	35	15	10	40	1.80
106168948--106168985	17	2.5	15	87	12	51	34	15	10	39	1.82
106168915--106168987	19	3.9	19	89	7	123	35	13	10	39	1.80
106170247--106170288	21	1.9	23	90	9	70	54	0	0	45	0.99
106172760--106172798	13	2.7	14	84	15	53	38	0	0	61	0.96
106175957--106175996	2	20.0	2	94	0	71	47	0	0	52	1.00
106176779--106177214	131	3.4	130	86	4	555	24	17	20	36	1.94
106179799--106179877	28	2.8	28	86	0	104	34	11	24	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   403   404   405   406   407   408   409   410   411   412   413   414   415   416   
          417   418   419   420   421   422   423   424   425   426   427