Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  13  of  402  ( 48166 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2907860--2907891
6
5.3
6
96
0
55
3
18
31
46
1.65
2917480--2917526
22
2.1
22
84
7
60
44
2
0
53
1.12
2920203--2920248
24
1.9
25
86
8
69
50
2
2
45
1.26
2920228--2920294
25
2.7
25
84
11
77
49
1
0
49
1.10
2920233--2920292
25
2.3
27
83
11
81
46
1
0
51
1.10
2920435--2920487
23
2.4
22
78
15
56
35
1
0
62
1.06
2921843--2921868
12
2.2
12
100
0
52
30
0
0
69
0.89
2922243--2922278
15
2.3
15
90
4
54
25
2
0
72
0.98
2922237--2922291
16
3.4
16
80
10
58
21
3
0
74
0.97
2934115--2934170
21
2.8
21
86
10
73
55
0
0
44
0.99
2934115--2934159
21
2.1
22
91
4
74
53
0
0
46
1.00
2934159--2934222
22
2.9
22
79
9
76
60
0
1
37
1.06
2941087--2941116
3
10.0
3
100
0
60
33
0
0
66
0.92
2951864--2951927
23
2.9
22
76
6
67
42
1
1
54
1.19
2951929--2951980
13
4.1
12
76
18
52
55
0
1
42
1.10
2951917--2951974
19
3.0
19
70
12
55
55
0
0
44
0.99
2951919--2951985
30
2.3
28
82
12
82
53
0
1
44
1.09
2952705--2952752
23
2.1
23
88
7
71
50
2
2
45
1.25
2952902--2952947
23
2.0
23
82
0
56
52
0
4
43
1.21
2961738--2961885
74
2.0
74
95
0
269
44
14
10
29
1.80
2966216--2966287
28
2.4
29
77
6
74
34
8
6
50
1.60
2967023--2967059
16
2.2
18
90
9
60
56
5
0
37
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2967019--2967066
18
2.6
20
78
18
59
58
4
0
37
1.18
2976707--2976775
35
2.0
35
91
2
113
47
1
0
50
1.09
2978948--2978982
14
2.7
13
87
12
54
62
0
0
37
0.95
2985154--2985206
20
2.8
18
72
16
54
47
3
3
45
1.39
2988479--2988524
23
2.0
23
91
0
74
19
6
26
47
1.73
2992676--2992725
25
2.0
25
92
0
82
32
22
12
34
1.90
2995141--2995176
19
1.9
18
88
5
54
63
0
5
30
1.17
2995946--2995976
15
2.1
15
93
0
53
61
0
38
0
0.96
2996609--2996645
3
12.3
3
100
0
74
67
0
0
32
0.91
2997460--2997503
14
2.9
16
77
16
58
36
2
4
56
1.32
2997786--2997844
30
2.0
29
83
9
75
61
5
3
30
1.34
3012152--3012195
22
2.0
22
90
0
70
40
0
0
59
0.98
3012233--3012280
22
2.2
22
85
7
62
33
0
2
64
1.05
3012566--3012613
19
2.5
19
86
10
62
54
4
4
37
1.39
3012529--3012686
73
2.2
72
79
6
167
51
3
3
41
1.33
3015887--3015920
9
3.8
9
92
7
52
64
0
0
35
0.94
3017247--3017286
19
2.0
20
90
4
64
30
5
2
62
1.29
3025520--3025561
22
1.9
22
90
0
66
45
9
11
33
1.73
3026410--3026630
110
2.0
110
100
0
442
28
22
14
34
1.93
3029068--3029126
25
2.4
25
86
5
77
40
18
27
13
1.88
3036794--3036837
22
2.0
22
86
0
61
40
2
0
56
1.11
3036873--3036920
22
2.2
22
85
7
62
33
0
2
64
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3037226--3037289
28
2.2
30
83
10
80
59
1
0
39
1.07
3037236--3037297
18
3.4
19
72
17
51
59
0
0
40
0.97
3037359--3037425
29
2.3
30
85
12
86
58
0
0
41
0.98
3037359--3037420
15
4.3
13
75
17
52
58
0
0
41
0.98
3041805--3041857
20
2.7
20
85
8
65
33
0
1
64
1.05
3041805--3041835
10
3.1
10
100
0
62
38
0
0
61
0.96
3051198--3051226
12
2.5
12
94
5
51
51
0
0
48
1.00
3055531--3055574
23
1.9
23
82
17
56
38
2
9
50
1.47
3056707--3056735
14
2.1
14
93
6
51
58
0
0
41
0.98
3060271--3060312
20
2.1
20
86
0
57
52
4
4
38
1.44
3068622--3068884
42
6.0
42
72
12
172
54
9
6
28
1.59
3068622--3068783
84
1.9
84
85
0
225
51
12
7
28
1.66
3073453--3073552
30
3.4
29
76
8
94
17
4
30
49
1.65
3073483--3073584
16
6.7
15
72
18
61
19
2
31
46
1.65
3073448--3073538
29
3.1
28
76
9
92
15
2
31
50
1.56
3073498--3073522
13
1.9
13
100
0
50
12
0
32
56
1.36
3073448--3073568
59
2.1
59
85
3
163
18
3
29
48
1.64
3073474--3073568
29
3.2
29
76
8
93
18
4
30
46
1.68
3073512--3073599
46
1.9
46
88
4
133
22
5
27
44
1.75
3073573--3073697
60
2.1
59
85
5
162
24
3
25
47
1.67
3075755--3075819
22
3.0
22
80
6
78
32
18
21
27
1.97
3075885--3075927
22
2.0
22
85
0
59
32
20
20
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3075779--3076013
108
2.2
108
80
4
251
39
17
18
24
1.92
3075919--3076087
86
2.0
85
81
5
196
42
15
18
23
1.89
3076017--3076255
131
1.8
129
82
3
309
42
15
16
25
1.87
3076353--3076433
22
3.6
22
88
5
101
33
13
18
34
1.90
3076743--3076785
22
2.0
22
86
9
61
32
11
20
34
1.89
3076531--3076839
130
2.3
129
78
8
320
40
15
18
25
1.89
3077212--3077332
41
3.0
40
83
7
154
33
14
19
32
1.93
3078246--3078292
10
4.6
10
80
15
51
10
2
0
87
0.63
3078246--3078293
20
2.4
20
86
10
71
12
2
0
85
0.69
3078246--3078291
8
5.9
8
78
14
51
10
2
0
86
0.64
3078246--3078290
23
2.0
23
86
8
65
11
2
0
86
0.65
3078254--3078292
11
3.5
11
86
6
60
12
0
0
87
0.55
3078680--3078706
11
2.5
11
100
0
54
7
0
0
92
0.38
3085311--3085355
22
2.1
21
87
4
63
24
4
22
48
1.68
3085367--3085556
30
6.4
29
65
16
77
21
3
29
45
1.68
3085341--3085595
60
4.3
60
79
7
272
19
3
30
46
1.66
3087162--3087217
23
2.5
23
85
2
78
0
1
14
83
0.72
3087240--3087285
3
15.7
3
80
13
51
30
2
0
67
1.03
3087236--3087299
14
4.4
14
80
7
65
34
1
1
62
1.14
3100350--3100383
17
2.0
18
88
11
54
64
0
0
35
0.94
3107701--3107800
49
2.1
47
81
7
112
43
6
5
46
1.50
3110772--3110812
12
3.4
12
83
16
50
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3111600--3111680
15
4.8
16
72
22
67
48
0
1
50
1.08
3111734--3111797
26
2.4
27
85
12
89
42
1
1
54
1.19
3111734--3111791
13
4.5
13
79
12
66
43
0
1
55
1.10
3111778--3111880
18
5.6
18
80
10
102
42
0
0
55
1.13
3111754--3111851
41
2.5
40
74
14
94
40
1
2
56
1.18
3111840--3111897
18
3.2
19
80
7
66
50
1
0
48
1.11
3115681--3115718
18
2.1
18
100
0
76
44
10
28
15
1.80
3117945--3118067
45
2.8
44
77
11
144
31
5
0
61
1.25
3121273--3121302
2
15.0
2
92
0
51
0
46
0
53
1.00
3121533--3121605
31
2.3
30
81
6
74
54
0
2
42
1.14
3121744--3121783
13
3.1
13
81
0
53
57
0
0
42
0.98
3121721--3121784
32
2.0
32
81
6
76
53
1
0
45
1.10
3121785--3121809
13
1.9
13
100
0
50
64
0
0
36
0.94
3124915--3124940
2
13.0
2
100
0
52
50
0
0
50
1.00
3126305--3126335
15
2.1
15
93
0
53
45
0
0
54
0.99
3128165--3128189
3
8.3
3
100
0
50
36
0
0
64
0.94
3130479--3130535
29
2.0
28
86
3
78
52
1
10
35
1.46
3139975--3140054
21
3.8
21
70
25
60
48
0
1
50
1.08
3140046--3140089
23
2.0
23
90
4
72
43
2
0
54
1.12
3140047--3140094
23
2.2
23
85
7
64
43
2
2
52
1.24
3140121--3140151
16
1.9
16
93
0
53
70
3
0
25
1.02
3140742--3140766
12
2.1
12
100
0
50
56
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3140773--3140820
22
2.2
21
82
10
53
41
12
2
43
1.54
3141396--3141454
12
4.8
12
77
10
57
33
1
1
62
1.15
3142005--3142119
32
3.5
32
71
18
92
50
0
1
47
1.11
3142065--3142127
30
2.1
29
85
8
83
49
0
0
50
1.00
3142415--3142483
24
2.7
25
71
13
61
53
5
0
40
1.25
3142449--3142513
31
2.1
31
85
5
87
60
4
0
35
1.18
3142486--3142534
16
2.9
17
80
11
57
46
0
0
53
1.00
3142512--3142561
26
2.0
25
88
7
75
38
0
2
60
1.09
3142707--3142772
23
3.0
22
78
8
73
54
0
1
43
1.09
3144204--3144650
224
2.0
224
94
0
777
25
23
17
33
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402