genome.fa.s1.2.7.7.80.10.50.1000.335.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  335  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30888331--30888383	26	2.0	26	85	7	72	28	18	22	30	1.98
30888356--30888858	158	3.2	158	75	8	394	23	29	27	20	1.99
30888832--30888884	26	2.0	26	88	0	79	26	18	26	28	1.98
30889554--30889606	26	2.0	26	92	7	90	28	16	24	30	1.97
30889579--30890011	159	2.7	158	81	4	523	23	30	28	17	1.97
30890055--30890107	26	2.0	26	96	0	97	24	20	28	26	1.99
30890422--30890474	26	2.0	26	89	7	81	28	15	24	32	1.95
30891317--30891369	26	2.0	26	88	0	79	26	18	26	28	1.98
30890750--30892805	699	3.0	697	77	7	1729	23	28	26	21	1.99
30892017--30892068	26	2.0	26	92	0	86	25	17	28	28	1.97
30895675--30895728	27	2.0	26	92	3	90	24	20	27	27	1.99
30896736--30896807	26	2.8	26	95	0	126	30	16	20	31	1.95
30896913--30896945	12	2.8	12	95	0	57	3	36	27	33	1.72
30897813--30897865	26	2.0	26	92	0	88	26	20	26	26	1.99
30898548--30898598	26	2.0	26	92	7	86	31	19	21	27	1.97
30898529--30898814	149	1.9	149	94	0	509	27	23	29	20	1.99
30900631--30900683	26	2.0	26	92	0	88	22	22	28	26	1.99
30901480--30901532	26	2.0	26	85	0	70	28	18	24	28	1.98
30902203--30902255	26	2.0	26	92	7	90	30	20	18	30	1.97
30902701--30902752	25	2.0	26	88	3	79	30	13	23	32	1.93
30903423--30903475	26	2.0	26	89	7	81	28	22	22	26	1.99
30903448--30903873	156	2.7	156	79	3	460	23	30	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30903922--30903973	25	2.0	26	92	3	88	26	21	25	26	1.99
30904644--30904721	26	3.0	26	92	3	122	30	17	23	28	1.97
30905163--30905232	26	2.7	26	90	0	113	28	21	22	27	1.99
30905895--30905947	26	2.0	26	89	7	81	26	20	24	28	1.99
30905920--30906336	157	2.6	157	77	3	462	24	28	28	19	1.98
30906395--30906447	26	2.0	26	92	0	88	26	20	26	26	1.99
30907290--30907340	26	2.0	26	96	0	93	25	15	29	29	1.96
30908009--30908061	26	2.0	26	86	13	74	28	20	24	26	1.99
30908193--30908245	26	2.0	26	88	0	79	28	20	24	26	1.99
30908007--30908348	184	1.9	185	83	3	456	25	28	26	20	1.99
30909233--30909595	184	2.0	184	85	2	487	23	28	26	20	1.99
30909471--30909523	26	2.0	26	88	0	79	28	20	24	26	1.99
30910193--30910245	26	2.0	26	89	7	81	30	20	24	24	1.99
30910218--30910649	159	2.7	158	75	2	418	21	29	28	19	1.98
30910219--30910720	158	3.2	158	75	3	517	21	29	28	20	1.98
30910694--30910746	26	2.0	26	92	0	88	26	18	28	26	1.98
30910851--30911183	159	2.1	158	81	2	373	22	29	27	20	1.98
30911210--30911260	26	2.0	26	92	0	84	25	15	29	29	1.96
30911931--30911983	26	2.0	26	89	7	81	32	20	20	26	1.98
30912374--30912426	26	2.0	26	88	0	79	26	18	28	26	1.98
30913098--30913149	26	2.0	26	88	7	79	28	17	25	28	1.97
30914321--30914373	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30920923--30920975	26	2.0	26	89	7	81	28	15	24	32	1.95
30920948--30921407	158	2.9	157	77	9	479	22	30	27	19	1.98
30921422--30921474	26	2.0	26	82	7	63	28	16	24	30	1.97
30921829--30922597	159	4.8	158	74	8	593	23	30	27	18	1.98
30921829--30922672	329	2.6	328	83	4	982	22	30	26	19	1.98
30922646--30922698	26	2.0	26	89	7	81	30	18	24	26	1.98
30922671--30923173	158	3.2	158	76	5	478	22	29	27	19	1.98
30923147--30923199	26	2.0	26	92	0	88	24	18	28	28	1.98
30923861--30923913	26	2.0	26	92	7	90	28	20	24	26	1.99
30924032--30924374	158	2.2	158	79	3	375	19	30	30	19	1.97
30924348--30924400	26	2.0	26	96	0	97	24	20	28	26	1.99
30925071--30925123	26	2.0	26	89	7	81	26	20	24	28	1.99
30925096--30925564	158	3.0	157	78	6	489	21	30	29	18	1.97
30926294--30926346	26	2.0	26	92	0	88	26	18	24	30	1.98
30926319--30926765	159	2.8	157	76	6	427	23	30	27	18	1.98
30927173--30927225	26	2.0	26	89	7	81	26	20	24	28	1.99
30927198--30927609	159	2.6	159	77	6	429	24	30	27	16	1.97
30927674--30927726	26	2.0	26	92	0	88	26	20	26	26	1.99
30931641--30931692	26	2.0	26	92	0	86	26	19	26	26	1.99
30933566--30933618	26	2.0	26	85	7	72	26	15	24	33	1.95
30938420--30938472	26	2.0	26	92	0	88	26	20	26	26	1.99
30939482--30939534	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30939507--30939951	159	2.8	158	74	5	416	23	28	27	20	1.99
30940006--30940367	171	2.1	170	79	5	390	22	29	27	20	1.98
30940374--30940875	158	3.2	158	76	5	483	24	29	26	19	1.98
30940849--30940901	26	2.0	26	92	0	88	30	20	20	28	1.98
30941582--30941634	26	2.0	26	89	7	81	30	20	22	26	1.98
30941926--30941977	25	2.0	26	88	3	79	25	17	28	28	1.97
30941950--30942316	169	2.2	171	80	8	410	21	29	28	20	1.98
30942318--30942817	159	3.2	155	77	8	481	21	30	28	20	1.98
30943464--30943956	158	3.1	158	77	4	384	23	29	27	19	1.98
30943464--30943956	159	3.1	157	76	4	488	23	29	27	19	1.98
30943930--30944034	26	4.0	26	87	7	151	26	19	25	28	1.98
30943932--30944037	52	2.0	52	90	3	169	27	18	25	28	1.98
30944014--30944474	159	2.9	159	80	6	515	20	32	29	17	1.96
30943431--30944538	553	2.0	553	85	2	1492	22	29	27	20	1.98
30944485--30944535	26	2.0	26	88	0	75	25	15	29	29	1.96
30945206--30945258	26	2.0	26	92	7	90	26	20	26	26	1.99
30945231--30945820	158	3.7	158	79	2	565	23	30	28	17	1.97
30945230--30945892	159	4.2	156	79	3	619	22	30	27	19	1.98
30945866--30945918	26	2.0	26	88	0	79	24	16	28	30	1.97
30946220--30946272	26	2.0	26	85	7	72	30	18	22	28	1.98
30946408--30946917	159	3.2	155	79	8	546	22	29	27	20	1.98
30946891--30946943	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30953534--30954000	158	2.9	158	77	5	498	23	31	27	18	1.97
30954010--30954062	26	2.0	26	88	0	79	24	20	28	26	1.99
30955070--30955122	26	2.0	26	85	7	72	32	18	22	26	1.97
30955625--30956953	159	8.3	158	75	6	913	22	30	26	19	1.98
30957612--30957664	26	2.0	26	89	7	81	30	18	22	28	1.98
30957796--30957848	26	2.0	26	85	0	70	30	20	22	26	1.98
30958164--30958216	26	2.0	26	89	7	81	30	18	24	26	1.98
30958005--30958374	184	2.0	184	81	2	429	24	27	27	21	1.99
30958189--30958635	158	2.8	157	78	4	443	22	31	27	18	1.97
30958665--30958717	26	2.0	26	85	0	70	28	16	26	28	1.97
30959033--30959082	26	2.0	25	96	4	91	30	16	24	30	1.96
30957637--30959668	868	2.3	856	80	6	2162	23	29	27	19	1.98
30959058--30959496	159	2.8	156	79	5	459	23	30	28	17	1.97
30958691--30960135	514	2.8	514	81	5	1581	23	29	27	19	1.98
30961114--30961166	26	2.0	26	85	0	70	26	16	26	30	1.97
30961103--30961469	196	1.9	197	81	2	452	23	27	26	22	1.99
30963397--30963449	26	2.0	26	85	0	70	30	18	24	26	1.98
30963607--30963659	26	2.0	26	89	7	81	26	22	24	26	2.00
30963238--30964209	394	2.5	391	82	3	1205	24	28	25	21	1.99
30964499--30964551	26	2.0	26	88	0	79	28	20	24	26	1.99
30964183--30964919	354	2.1	349	79	6	789	24	28	26	21	1.99
30964695--30965056	184	2.0	184	84	2	476	25	27	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30964314--30965016	354	2.0	353	79	5	774	23	29	27	20	1.99
30965320--30965644	170	1.9	170	83	6	426	22	31	27	18	1.97
30965483--30965819	157	2.1	159	79	4	369	24	30	25	19	1.98
30966808--30967142	159	2.1	158	81	4	388	23	30	26	19	1.98
30968543--30968595	26	2.0	26	89	7	81	30	20	22	26	1.98
30969392--30969444	26	2.0	26	89	7	81	28	18	24	28	1.98
30969887--30969939	26	2.0	26	92	0	88	30	20	22	26	1.98
30970625--30971125	158	3.2	157	76	4	490	22	29	28	19	1.98
30971099--30971167	26	2.7	26	97	0	129	26	17	30	26	1.97
30971506--30971558	26	2.0	26	92	7	90	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402