genome.fa.s1.2.7.7.80.10.50.1000.329.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  329  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30482142--30482640	158	3.2	157	76	5	450	23	30	27	19	1.98
30482614--30482663	26	1.9	26	91	0	82	26	18	28	28	1.98
30483678--30483730	26	2.0	26	92	0	88	24	20	26	28	1.99
30484045--30484097	26	2.0	26	85	0	70	26	16	26	30	1.97
30484757--30484809	26	2.0	26	92	7	90	30	20	22	26	1.98
30486127--30486179	26	2.0	26	88	0	79	24	18	30	26	1.98
30486218--30486242	13	1.9	13	100	0	50	32	20	40	8	1.81
30486482--30486531	26	1.9	26	95	0	91	28	22	26	24	1.99
30486678--30486730	26	2.0	26	89	7	81	28	18	24	28	1.98
30487444--30487496	26	2.0	26	81	0	61	28	16	24	30	1.97
30488111--30488162	26	2.0	26	88	0	77	26	11	28	32	1.91
30488844--30488894	26	2.0	25	96	3	93	31	19	21	27	1.97
30490729--30490779	25	2.0	25	84	3	66	29	15	27	27	1.96
30491459--30491512	26	2.1	26	89	6	83	27	18	24	29	1.98
30491801--30491851	26	2.0	26	96	0	93	25	15	29	29	1.96
30492009--30492061	26	2.0	26	89	7	81	28	18	24	28	1.98
30492511--30492563	26	2.0	26	86	13	74	26	16	26	30	1.97
30492866--30493207	185	1.8	186	80	3	411	25	25	26	22	2.00
30493804--30493855	26	2.0	26	92	7	88	28	19	25	26	1.98
30493831--30494115	158	1.8	158	86	3	412	22	32	29	15	1.95
30494145--30494197	26	2.0	26	96	0	97	24	20	28	26	1.99
30495211--30495263	26	2.0	26	89	7	81	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30495969--30496409	156	2.8	158	77	6	484	23	31	25	18	1.98
30495969--30496483	159	3.3	158	75	9	462	22	31	27	19	1.98
30496533--30496585	26	2.0	26	85	7	72	28	18	22	30	1.98
30497034--30497086	26	2.0	26	88	0	79	28	18	26	26	1.98
30496048--30497184	513	2.2	511	79	6	1131	24	29	25	20	1.99
30497400--30497451	26	2.0	26	81	7	61	28	19	25	26	1.98
30497913--30498240	175	1.9	175	83	1	424	27	25	25	21	2.00
30498383--30498433	26	2.0	26	88	0	75	25	13	27	33	1.94
30499251--30499303	26	2.0	26	92	7	90	28	16	24	30	1.97
30499276--30499777	158	3.2	157	72	7	374	22	27	27	22	1.99
30499751--30499803	26	2.0	26	88	0	79	26	18	26	28	1.98
30500125--30500177	26	2.0	26	88	0	79	26	18	28	26	1.98
30500150--30500613	159	2.9	159	79	6	521	23	30	27	18	1.97
30500626--30500678	26	2.0	26	92	0	88	26	20	26	26	1.99
30500791--30500835	12	3.8	12	77	11	56	2	33	28	35	1.70
30500782--30500834	24	2.2	24	96	0	97	3	30	30	35	1.75
30500859--30500911	26	2.0	26	92	7	90	28	20	24	26	1.99
30501359--30501411	26	2.0	26	96	0	97	24	16	28	30	1.97
30501991--30502023	11	3.0	11	90	0	57	18	39	27	15	1.90
30502093--30502145	26	2.0	26	92	7	90	28	20	24	26	1.99
30502118--30502455	158	2.1	158	82	3	394	22	30	28	18	1.97
30502645--30502697	26	2.0	26	89	7	81	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30502670--30503271	317	1.9	316	81	4	721	21	31	29	17	1.96
30502670--30503295	159	3.9	159	80	4	649	21	32	28	17	1.96
30503540--30504139	159	3.8	158	76	6	430	22	27	28	21	1.99
30502118--30504582	870	2.8	860	80	5	2711	22	28	27	20	1.99
30504556--30504608	26	2.0	26	88	0	79	26	18	26	28	1.98
30504278--30504626	183	1.9	184	84	5	465	24	26	26	22	2.00
30504284--30504680	183	2.2	183	81	5	437	24	26	27	20	1.99
30505278--30505330	26	2.0	26	92	7	90	28	20	24	26	1.99
30505276--30505956	342	2.0	344	81	2	796	23	30	25	20	1.99
30505740--30506063	159	2.0	159	82	2	391	22	29	28	19	1.98
30506122--30506174	26	2.0	26	89	7	81	26	18	26	28	1.98
30506318--30506370	26	2.0	26	88	0	79	28	20	24	26	1.99
30506501--30506553	26	2.0	26	96	0	97	24	20	28	26	1.99
30506294--30506626	183	1.8	183	84	3	465	24	29	27	19	1.99
30507214--30507292	26	3.0	26	88	3	124	30	18	22	27	1.98
30507426--30507477	26	2.0	26	96	0	95	25	19	28	26	1.98
30508146--30508224	26	3.0	26	92	3	115	31	18	21	27	1.97
30508358--30508409	26	2.0	26	96	0	95	25	19	28	26	1.98
30506318--30509341	925	3.3	928	90	3	4675	26	23	24	25	2.00
30508989--30509014	11	2.4	11	100	0	52	23	42	15	19	1.89
30509091--30509143	26	2.0	26	89	7	81	30	20	22	26	1.98
30509277--30509328	26	2.0	26	96	0	95	25	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30516820--30517321	158	3.2	155	71	6	418	23	29	27	19	1.98
30517674--30517725	25	2.0	26	89	10	81	28	17	25	28	1.97
30517700--30518165	159	2.9	158	80	4	537	22	30	28	19	1.98
30518878--30518930	26	2.0	26	89	7	81	28	18	24	28	1.98
30519575--30519627	26	2.0	26	92	0	88	26	20	26	26	1.99
30519258--30520030	355	2.2	350	78	7	751	23	29	26	20	1.99
30519942--30519992	26	2.0	26	84	7	68	31	15	23	29	1.95
30520444--30520496	26	2.0	26	96	0	97	24	20	28	26	1.99
30521279--30521331	26	2.0	26	96	0	97	24	20	28	26	1.99
30521116--30521745	346	1.8	338	80	6	761	24	28	26	19	1.99
30521625--30521677	26	2.0	26	89	7	81	28	18	24	28	1.98
30521651--30522150	158	3.2	156	75	5	486	21	30	28	19	1.98
30522124--30522174	26	2.0	26	96	0	93	25	19	27	27	1.99
30522334--30522386	26	2.0	26	92	7	90	28	20	24	26	1.99
30522833--30522885	26	2.0	26	92	0	88	24	18	28	28	1.98
30523162--30523214	26	2.0	26	92	7	90	30	20	22	26	1.98
30523662--30523714	26	2.0	26	85	0	70	26	18	24	30	1.98
30524699--30524751	26	2.0	26	92	0	88	26	20	26	26	1.99
30524696--30525053	195	1.8	195	81	4	445	24	27	27	21	1.99
30524919--30525383	159	2.9	158	76	4	413	24	29	26	20	1.99
30525772--30525824	26	2.0	26	92	0	88	26	18	24	30	1.98
30525801--30526300	159	3.1	154	76	4	433	23	30	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30526993--30527045	26	2.0	26	89	7	81	28	18	24	28	1.98
30527337--30527389	26	2.0	26	89	7	81	24	20	26	28	1.99
30527546--30527598	26	2.0	26	92	7	90	28	20	24	26	1.99
30528230--30528282	26	2.0	26	88	0	79	24	16	28	30	1.97
30528610--30528662	26	2.0	26	89	7	81	30	20	22	26	1.98
30528635--30528999	159	2.3	159	80	3	394	25	31	24	18	1.97
30529084--30529115	16	2.0	16	100	0	64	25	43	12	18	1.85
30530230--30530282	26	2.0	26	92	0	88	30	20	24	24	1.99
30530227--30530860	350	1.8	350	80	2	781	25	28	25	20	1.99
30532108--30532160	26	2.0	26	92	0	88	26	20	26	26	1.99
30532352--30532917	159	3.6	158	77	6	536	24	28	27	19	1.99
30533489--30533540	26	2.0	25	92	3	86	30	21	19	28	1.97
30534187--30534493	170	1.8	170	83	7	417	23	31	25	19	1.98
30534354--30534647	158	1.9	158	82	0	372	24	26	26	21	2.00
30534353--30534699	158	2.2	157	79	2	363	24	26	26	22	2.00
30534673--30534725	26	2.0	26	85	7	72	26	16	26	30	1.97
30535417--30535846	159	2.7	157	78	4	461	23	30	27	19	1.98
30535892--30535944	26	2.0	26	88	0	79	26	18	26	28	1.98
30535575--30536274	356	2.0	343	80	6	771	23	28	26	21	1.99
30536565--30536617	26	2.0	26	92	7	90	26	20	26	26	1.99
30537426--30537478	26	2.0	26	89	7	81	30	20	22	26	1.98
30538479--30538531	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30538822--30538874	26	2.0	26	100	0	106	26	20	26	26	1.99
30539057--30539887	158	5.2	158	75	5	563	23	29	26	20	1.99
30539186--30539500	170	1.9	170	88	0	477	20	31	28	20	1.97
30539861--30539913	26	2.0	26	92	0	88	24	18	28	28	1.98
30546390--30546442	26	2.0	26	92	0	88	26	20	26	26	1.99
30546805--30547277	159	3.0	159	74	4	355	22	30	27	19	1.98
30552458--30552943	159	3.1	159	74	6	392	23	29	25	20	1.99
30553672--30554166	158	3.1	157	77	6	428	23	29	26	20	1.99
30554295--30554708	159	2.6	158	81	4	417	24	29	24	21	1.99
30554502--30554846	158	2.2	158	80	4	376	26	26	25	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402