genome.fa.s1.2.7.7.80.10.50.1000.333.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  333  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30741408--30741458	26	2.0	26	92	0	84	29	25	17	27	1.98
30741434--30741775	159	2.2	158	83	3	420	19	26	30	22	1.98
30741749--30741801	26	2.0	26	82	7	63	30	22	16	30	1.96
30742311--30742822	159	3.3	155	74	7	442	19	26	30	23	1.98
30742796--30742848	26	2.0	26	89	7	81	26	22	20	30	1.98
30743176--30743228	26	2.0	26	88	0	79	30	28	16	24	1.97
30743340--30743705	158	2.3	159	80	6	409	18	27	30	22	1.97
30743677--30743729	26	2.0	26	85	7	72	28	22	18	30	1.98
30743873--30743925	26	2.0	26	92	7	90	26	24	20	28	1.99
30744612--30745101	157	3.1	157	75	8	476	19	27	28	23	1.98
30745076--30745128	26	2.0	26	89	7	81	24	22	22	30	1.99
30745392--30745416	13	1.9	13	100	0	50	4	48	24	24	1.68
30745956--30746008	26	2.0	26	89	7	81	28	24	18	28	1.98
30745982--30746349	171	2.2	171	82	3	420	20	25	29	23	1.99
30752968--30753020	26	2.0	26	89	7	81	28	26	18	26	1.98
30752994--30753493	157	3.2	156	81	3	608	18	28	31	22	1.97
30753467--30753519	26	2.0	26	92	7	90	26	24	20	28	1.99
30754094--30754662	302	1.9	301	85	5	799	16	28	32	22	1.96
30753935--30754663	153	4.8	152	78	10	649	17	28	31	22	1.96
30754636--30754688	26	2.0	26	96	0	97	26	28	20	24	1.99
30762514--30762565	26	2.0	26	96	0	95	26	28	19	25	1.98
30762699--30762777	26	3.0	26	94	3	133	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30762854--30762879	11	2.4	11	100	0	52	19	15	42	23	1.89
30763460--30763511	26	2.0	26	92	0	86	28	28	17	25	1.97
30763645--30763723	26	3.0	26	88	3	115	27	22	18	30	1.98
30761773--30764619	946	3.0	927	91	3	4381	25	23	23	27	2.00
30764384--30764436	26	2.0	26	92	0	88	28	26	20	24	1.99
30764567--30764619	26	2.0	26	89	7	81	28	24	18	28	1.98
30764929--30765279	159	2.2	158	81	3	393	19	25	30	24	1.98
30766694--30766746	26	2.0	26	85	7	72	28	20	24	26	1.99
30766720--30767222	159	3.2	156	74	7	415	22	29	27	19	1.98
30767745--30767797	26	2.0	26	89	7	81	32	18	20	28	1.97
30767526--30767878	196	1.8	195	87	4	532	26	28	25	20	1.99
30767771--30768231	158	2.9	156	76	9	452	22	29	27	19	1.98
30769777--30769829	26	2.0	26	96	0	97	22	20	32	24	1.98
30769137--30770810	343	4.8	345	79	5	1490	22	29	28	20	1.98
30770120--30770172	26	2.0	26	89	7	81	26	22	24	26	2.00
30769190--30770439	686	1.8	685	83	1	1662	21	29	28	20	1.98
30770500--30771005	158	3.2	156	78	5	482	23	30	27	19	1.98
30770978--30771031	26	2.1	26	96	0	99	25	22	27	24	2.00
30770661--30771408	343	2.2	343	86	1	1007	22	29	28	19	1.98
30769803--30771394	856	1.9	844	83	2	2069	22	29	27	19	1.98
30771687--30771739	26	2.0	26	85	7	72	30	22	22	24	1.99
30771528--30771897	184	2.0	184	84	0	479	24	28	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30771713--30772214	158	3.2	158	78	4	494	22	29	28	20	1.98
30771712--30772150	159	2.8	157	80	4	461	22	29	28	19	1.98
30772188--30772240	26	2.0	26	85	7	72	26	16	26	30	1.97
30772541--30772903	158	2.3	159	79	7	389	25	29	24	20	1.99
30772541--30772959	159	2.6	159	75	6	418	25	28	26	19	1.98
30773268--30773325	26	2.2	26	84	3	71	27	6	5	60	1.44
30773748--30774562	159	5.1	160	74	4	657	23	28	27	20	1.99
30773759--30774563	317	2.5	317	81	4	933	23	28	27	20	1.99
30774226--30775052	343	2.4	343	84	2	1018	23	29	27	19	1.98
30774886--30774935	26	1.9	26	95	0	91	26	22	28	24	1.99
30775090--30775696	159	3.8	155	72	7	387	23	30	26	19	1.98
30775090--30775829	318	2.3	317	82	1	881	22	29	27	20	1.98
30775175--30775696	159	3.3	155	74	7	474	24	31	25	18	1.98
30775810--30775860	26	2.0	26	92	0	84	25	17	27	29	1.98
30775910--30775939	13	2.3	13	100	0	60	23	30	33	13	1.93
30776192--30776244	26	2.0	26	82	7	63	32	22	20	24	1.98
30776534--30776585	25	2.0	25	85	3	68	26	17	25	30	1.97
30776677--30776707	12	2.6	12	94	0	53	12	41	19	25	1.87
30777608--30777663	26	2.2	24	82	17	76	28	19	21	30	1.98
30777917--30778123	110	1.9	110	92	0	351	23	33	26	16	1.96
30778219--30778271	26	2.0	26	85	7	72	24	15	28	32	1.95
30778588--30778640	26	2.0	26	92	7	90	28	18	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30778197--30778864	356	1.8	362	81	7	836	23	28	27	20	1.99
30785774--30786195	159	2.7	159	80	3	424	24	29	28	17	1.97
30786224--30786274	26	2.0	26	92	7	86	27	19	27	25	1.99
30786601--30786651	26	2.0	26	92	0	84	27	19	23	29	1.98
30788176--30788228	26	2.0	26	88	0	79	24	22	26	26	2.00
30788543--30788595	26	2.0	26	88	0	79	24	16	28	30	1.97
30789259--30789311	26	2.0	26	92	7	90	28	20	24	26	1.99
30790638--30790690	26	2.0	26	85	0	70	26	18	28	26	1.98
30790994--30791043	26	1.9	26	95	0	91	28	22	26	24	1.99
30791191--30791243	26	2.0	26	85	7	72	28	16	24	30	1.97
30791955--30792007	26	2.0	26	85	0	70	26	18	24	30	1.98
30792622--30792673	26	2.0	26	84	0	68	28	11	26	32	1.91
30794592--30794997	158	2.6	157	73	5	372	20	27	27	24	1.99
30794971--30795023	26	2.0	26	89	7	81	28	24	18	28	1.98
30795857--30795906	26	1.9	26	88	8	75	28	26	16	30	1.96
30795883--30796383	158	3.2	157	72	6	458	21	26	28	24	1.99
30796357--30796409	26	2.0	26	89	7	81	28	24	18	28	1.98
30797058--30797110	26	2.0	26	92	7	90	30	24	16	28	1.97
30797228--30797280	26	2.0	26	92	0	88	28	26	20	24	1.99
30798575--30798627	26	2.0	26	92	0	88	26	28	18	26	1.98
30799075--30799127	26	2.0	26	89	7	81	28	24	18	28	1.98
30799177--30799691	158	3.3	158	78	6	526	18	27	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30799250--30799684	157	2.7	159	79	7	445	19	25	32	22	1.97
30799708--30799760	26	2.0	26	89	7	81	28	24	18	28	1.98
30800774--30800826	26	2.0	26	85	7	72	28	26	20	24	1.99
30801497--30801549	26	2.0	26	96	0	97	26	28	20	24	1.99
30801563--30801860	158	1.9	158	86	6	435	16	28	32	21	1.95
30801839--30801891	26	2.0	26	89	7	81	26	20	22	30	1.98
30802746--30802798	26	2.0	26	89	7	81	32	18	18	30	1.96
30802487--30802968	185	2.5	190	80	7	489	18	27	28	24	1.98
30803626--30803678	26	2.0	26	85	7	72	28	22	18	30	1.98
30803836--30803886	26	2.0	26	96	0	93	29	29	15	25	1.96
30804177--30804255	26	3.0	26	92	3	124	30	24	16	29	1.96
30804927--30804978	26	2.0	26	88	0	77	26	25	19	28	1.98
30805110--30805365	129	2.0	129	82	0	314	17	29	29	23	1.97
30805531--30805583	26	2.0	26	92	0	88	28	28	18	24	1.98
30805614--30806058	159	2.8	156	77	6	430	18	27	31	22	1.97
30806031--30806082	26	2.0	25	88	3	77	30	21	19	28	1.97
30808505--30808557	26	2.0	26	85	7	72	30	24	16	28	1.97
30808442--30808910	196	2.5	183	80	8	500	20	27	28	23	1.99
30808704--30808753	26	1.9	26	95	0	91	24	26	22	28	1.99
30809056--30809111	27	2.1	27	86	6	78	28	26	19	25	1.99
30810432--30810484	26	2.0	26	92	7	90	26	24	20	28	1.99
30811524--30811576	26	2.0	26	88	0	79	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30812246--30812296	26	2.0	26	88	7	77	27	27	17	27	1.98
30812729--30812781	26	2.0	26	85	7	72	24	22	20	32	1.98
30819364--30819415	26	2.0	26	84	0	68	30	30	15	23	1.95
30819452--30819889	158	2.8	159	81	5	496	18	28	30	22	1.97
30819861--30819913	26	2.0	26	92	7	90	26	24	20	28	1.99
30820231--30820283	26	2.0	26	85	7	72	32	28	15	24	1.95
30819608--30820465	356	2.4	344	78	10	872	19	27	30	22	1.98
30820379--30820585	112	1.9	111	90	1	333	16	27	33	22	1.96
30821560--30821612	26	2.0	26	85	0	70	28	24	18	28	1.98
30821793--30821823	12	2.6	12	94	0	53	25	19	41	12	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402