genome.fa.s1.2.7.7.80.10.50.1000.349.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  349  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32001575--32001919	159	2.2	158	80	3	363	25	31	25	17	1.97
32001893--32001971	26	3.0	26	92	3	124	30	20	22	26	1.98
32001550--32002247	369	1.9	368	81	3	857	24	29	26	19	1.98
32001944--32002446	158	3.2	159	77	3	485	23	29	27	20	1.98
32002420--32002472	26	2.0	26	88	0	79	26	18	28	26	1.98
32002712--32002743	11	2.6	13	85	14	50	37	0	9	53	1.34
32003400--32003722	169	1.9	170	85	3	445	22	31	28	17	1.96
32003802--32003852	26	2.0	26	84	0	66	27	15	25	31	1.96
32004670--32004722	26	2.0	26	92	0	88	28	15	24	32	1.95
32011580--32011632	26	2.0	26	92	0	88	24	18	28	28	1.98
32012302--32012354	26	2.0	26	89	7	81	30	20	22	26	1.98
32012800--32012878	26	3.0	25	82	10	88	26	15	27	30	1.96
32013586--32014091	160	3.2	158	77	9	506	24	31	26	17	1.97
32014068--32014117	26	1.9	26	91	0	82	26	20	32	22	1.98
32014922--32014973	25	2.0	26	92	3	88	26	15	26	30	1.96
32015628--32015680	26	2.0	26	92	7	90	32	20	20	26	1.98
32015812--32016172	157	2.3	159	82	3	417	26	29	26	18	1.98
32016288--32016339	27	2.0	26	88	3	77	30	19	25	25	1.98
32016666--32016718	26	2.0	26	89	7	81	28	20	24	26	1.99
32017574--32018193	158	3.9	158	78	5	567	23	29	28	18	1.98
32018586--32018638	26	2.0	26	92	0	88	30	16	24	28	1.97
32018612--32019115	158	3.2	156	75	7	460	22	29	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32019427--32019520	47	2.0	46	83	2	116	8	40	25	25	1.84
32019685--32019737	26	2.0	26	89	7	81	26	18	26	28	1.98
32019837--32020260	187	2.3	185	82	6	509	22	27	27	21	1.99
32020583--32020635	26	2.0	26	88	0	79	24	22	24	28	2.00
32023570--32023622	26	2.0	26	85	0	70	26	18	24	30	1.98
32025368--32025446	26	3.0	26	92	0	104	25	16	27	30	1.97
32029075--32029127	26	2.0	26	88	0	79	24	16	28	30	1.97
32030433--32030485	26	2.0	26	88	0	79	24	20	28	26	1.99
32030629--32030681	26	2.0	26	88	0	79	30	18	22	28	1.98
32031877--32031929	26	2.0	26	89	7	81	30	20	22	26	1.98
32033417--32033467	26	2.0	26	92	0	84	33	19	21	25	1.97
32033443--32033840	158	2.5	157	79	6	419	25	26	27	20	1.99
32034971--32035022	26	2.0	26	92	0	86	26	19	26	26	1.99
32035276--32035328	26	2.0	26	88	0	79	28	20	24	26	1.99
32036531--32036582	26	2.0	26	92	0	86	26	19	26	26	1.99
32036871--32037377	159	3.2	158	74	8	379	23	28	27	21	1.99
32037350--32037404	26	2.1	27	89	3	85	29	18	29	23	1.98
32037552--32037620	26	2.7	26	97	0	129	30	18	23	27	1.98
32037568--32038227	355	1.9	356	81	5	807	25	28	26	20	1.99
32037949--32038395	159	2.8	158	79	4	445	24	30	26	18	1.98
32039769--32039826	26	2.2	27	87	9	84	27	20	24	27	1.99
32040272--32040322	26	2.0	26	88	7	77	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32040864--32040913	26	1.9	26	91	0	82	28	14	30	28	1.95
32041596--32041662	26	2.6	26	97	2	127	37	13	19	29	1.90
32043520--32043826	158	1.9	157	80	5	350	20	29	30	18	1.97
32043837--32043889	26	2.0	26	92	0	88	24	18	28	28	1.98
32044390--32044441	26	2.0	26	92	0	86	26	19	26	26	1.99
32044953--32045005	26	2.0	26	96	0	97	24	20	28	26	1.99
32045957--32046009	26	2.0	26	92	7	90	26	20	26	26	1.99
32046690--32046742	26	2.0	26	92	7	90	28	20	24	26	1.99
32047777--32047829	26	2.0	26	89	7	81	28	18	24	28	1.98
32048120--32048172	26	2.0	26	85	0	70	24	20	26	28	1.99
32049256--32049306	26	2.0	26	84	7	68	29	17	23	29	1.97
32049762--32049813	26	2.0	26	92	0	86	30	17	25	26	1.97
32053857--32053909	26	2.0	26	92	7	90	26	20	26	26	1.99
32054579--32054631	26	2.0	26	89	7	81	28	18	22	30	1.98
32055079--32055131	26	2.0	26	96	0	97	24	20	28	26	1.99
32055432--32055483	26	2.0	26	88	3	79	30	19	23	26	1.98
32055942--32055993	26	2.0	26	92	7	88	30	19	23	26	1.98
32054577--32056883	852	2.7	846	77	8	1852	24	29	26	19	1.99
32055268--32056469	512	2.4	498	82	6	1427	24	29	26	19	1.99
32055967--32056787	315	2.6	312	81	5	877	24	29	26	20	1.99
32055968--32056784	158	5.2	157	72	9	536	24	29	25	20	1.99
32056929--32056981	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32056734--32057053	171	1.9	171	84	1	426	25	25	28	20	1.99
32056955--32057457	159	3.2	157	77	5	530	22	29	28	20	1.98
32056284--32057570	673	1.9	669	82	3	1627	23	28	28	20	1.99
32057431--32057483	26	2.0	26	96	0	97	22	18	30	28	1.98
32058471--32058523	26	2.0	26	85	7	72	26	16	26	30	1.97
32058678--32058729	26	2.0	26	88	7	79	30	15	25	28	1.96
32058704--32059039	158	2.1	158	83	3	408	24	28	26	20	1.99
32059020--32059072	26	2.0	26	92	0	88	24	18	28	28	1.98
32060627--32060679	26	2.0	26	86	13	74	30	15	24	30	1.95
32061120--32061172	26	2.0	26	88	0	79	24	16	28	30	1.97
32062469--32062521	26	2.0	26	88	0	79	24	20	28	26	1.99
32062665--32062717	26	2.0	26	88	0	79	30	18	22	28	1.98
32063841--32063890	26	1.9	26	87	0	73	30	16	24	30	1.96
32064479--32064654	97	1.8	97	84	0	244	25	35	19	19	1.96
32065444--32065496	26	2.0	26	89	7	81	30	18	22	28	1.98
32066038--32066087	26	1.9	26	91	0	82	28	14	30	28	1.95
32066764--32066840	26	3.0	25	86	5	109	33	16	19	29	1.94
32067143--32067195	26	2.0	26	89	7	81	28	18	24	28	1.98
32067407--32067674	141	1.9	141	81	0	320	23	30	27	18	1.98
32067546--32067883	160	2.1	160	80	4	378	24	28	27	20	1.99
32068566--32068618	26	2.0	26	89	7	81	30	20	20	28	1.98
32068908--32068960	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32069461--32069513	26	2.0	26	85	0	70	24	18	26	30	1.98
32070026--32070078	26	2.0	26	89	7	81	26	18	26	28	1.98
32071031--32071083	26	2.0	26	89	7	81	26	22	24	26	2.00
32072815--32072867	26	2.0	26	92	7	90	28	20	24	26	1.99
32074195--32074246	26	2.0	25	92	3	86	28	19	23	28	1.98
32074194--32074853	342	1.9	342	82	3	828	22	28	28	19	1.98
32074891--32074943	26	2.0	26	86	13	74	30	16	24	28	1.97
32074784--32075161	207	1.8	208	85	3	537	22	26	27	22	1.99
32075846--32076260	159	2.6	158	74	4	379	25	28	27	18	1.98
32077055--32077537	159	3.0	156	77	5	459	22	29	28	19	1.98
32077559--32077611	26	2.0	26	92	0	88	26	16	24	32	1.97
32078278--32078330	26	2.0	26	92	7	90	30	20	22	26	1.98
32079258--32079310	26	2.0	26	96	0	97	24	20	28	26	1.99
32080275--32080327	26	2.0	26	89	7	81	26	18	26	28	1.98
32080974--32081032	26	2.3	26	88	5	84	28	22	22	27	1.99
32081514--32081566	26	2.0	26	85	7	72	32	20	20	26	1.98
32081230--32081590	197	1.8	197	84	7	491	25	28	25	20	1.99
32083211--32083263	26	2.0	26	92	0	88	26	20	28	24	1.99
32083630--32083683	21	2.6	21	90	0	90	22	25	25	25	2.00
32083775--32083827	26	2.0	26	92	7	90	28	20	24	26	1.99
32083801--32084303	159	3.2	159	79	4	532	22	30	28	18	1.97
32084278--32084327	26	1.9	26	87	0	73	28	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32085005--32085057	26	2.0	26	86	13	74	28	16	24	30	1.97
32085348--32085400	26	2.0	26	96	0	97	24	20	28	26	1.99
32085260--32085616	188	1.9	188	82	3	450	25	27	26	20	1.99
32085731--32085783	26	2.0	26	96	0	97	28	20	24	26	1.99
32091749--32091801	26	2.0	26	92	7	90	26	20	26	26	1.99
32092471--32092523	26	2.0	26	89	7	81	28	18	22	30	1.98
32092972--32093024	26	2.0	26	96	0	97	24	20	28	26	1.99
32092813--32093479	355	1.9	352	82	3	829	24	30	26	18	1.98
32093327--32093378	26	2.0	26	88	3	79	30	19	23	26	1.98
32093168--32093534	183	2.0	183	88	4	553	25	29	25	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402