genome.fa.s1.2.7.7.80.10.50.1000.368.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  368  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33598927--33598979	26	2.0	26	89	7	81	30	20	22	26	1.98
33599585--33599998	159	2.6	159	73	10	380	24	31	24	19	1.98
33600082--33600614	157	3.4	156	73	8	355	25	29	24	20	1.99
33599482--33600541	486	2.2	488	79	4	1088	24	30	25	18	1.98
33600588--33600640	26	2.0	26	92	0	88	24	18	28	28	1.98
33601844--33601896	26	2.0	26	89	7	81	30	20	22	26	1.98
33601870--33602372	159	3.2	158	78	7	511	23	30	26	20	1.98
33603068--33603120	26	2.0	26	89	7	81	28	18	24	28	1.98
33606389--33606441	26	2.0	26	85	7	72	32	18	20	28	1.97
33606573--33606624	25	2.0	26	92	3	88	25	17	28	28	1.97
33607484--33608073	159	3.7	157	74	8	469	24	30	26	18	1.98
33607330--33608073	318	2.4	315	83	4	865	24	29	26	19	1.98
33608480--33608532	26	2.0	26	96	0	97	24	20	28	26	1.99
33609228--33609729	159	3.2	157	76	3	479	24	29	26	18	1.98
33609703--33609755	26	2.0	26	92	7	90	26	20	26	26	1.99
33610058--33610110	26	2.0	26	92	7	90	26	20	26	26	1.99
33609522--33610183	354	1.9	354	85	3	940	22	28	28	20	1.99
33610789--33610841	26	2.0	26	85	7	72	32	20	22	24	1.98
33611508--33612700	616	1.9	613	90	1	1899	28	20	21	29	1.98
33612823--33612875	26	2.0	26	85	7	72	28	20	22	28	1.99
33614469--33615007	159	3.4	158	74	11	458	24	29	25	20	1.99
33614468--33615180	318	2.2	323	79	7	725	24	29	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33617053--33617105	26	2.0	26	89	7	81	28	18	24	28	1.98
33617079--33617573	158	3.1	158	78	6	511	22	31	27	18	1.97
33618184--33618210	11	2.5	11	100	0	54	7	33	33	25	1.84
33618286--33618338	26	2.0	26	89	7	81	30	18	24	26	1.98
33618628--33618679	25	2.0	26	92	3	88	25	21	25	28	1.99
33618539--33618915	190	2.0	194	84	5	505	23	27	28	20	1.99
33618818--33618870	26	2.0	26	89	7	81	28	18	24	28	1.98
33619159--33619211	26	2.0	26	92	0	88	24	18	28	28	1.98
33620603--33620655	26	2.0	26	89	7	81	28	18	24	28	1.98
33620628--33621079	159	2.9	158	76	3	451	23	31	27	17	1.97
33621104--33621156	26	2.0	26	92	0	88	24	18	28	28	1.98
33621837--33621889	26	2.0	26	89	7	81	30	20	22	26	1.98
33622180--33622231	25	2.0	26	92	3	88	25	21	25	28	1.99
33622376--33622428	26	2.0	26	89	7	81	30	16	22	30	1.96
33623234--33623701	157	3.0	158	75	6	466	22	31	27	17	1.97
33623731--33623781	26	2.0	26	84	7	68	29	17	23	29	1.97
33626712--33626764	26	2.0	26	92	7	90	28	20	24	26	1.99
33628253--33628305	26	2.0	26	88	0	79	26	22	26	24	2.00
33629004--33629427	159	2.7	159	79	3	426	25	30	25	17	1.98
33629475--33629527	26	2.0	26	82	13	65	24	16	28	30	1.97
33629854--33629906	26	2.0	26	96	0	97	30	20	24	24	1.99
33630197--33630249	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33634742--33634793	26	2.0	26	88	7	79	28	17	25	28	1.97
33635242--33635294	26	2.0	26	85	0	70	26	16	26	30	1.97
33635407--33635938	158	3.4	158	74	9	395	22	30	26	20	1.98
33635419--33635867	158	2.8	159	78	4	444	23	29	27	19	1.98
33635912--33635964	26	2.0	26	96	0	97	24	20	28	26	1.99
33636290--33636342	26	2.0	26	85	7	72	28	16	20	33	1.95
33636315--33636760	157	2.8	158	79	4	479	22	30	28	19	1.98
33636790--33636842	26	2.0	26	92	0	88	26	20	26	26	1.99
33636846--33638279	695	2.1	696	89	1	2232	26	22	23	27	1.99
33638857--33638909	26	2.0	26	89	7	81	28	18	24	28	1.98
33638698--33639076	185	2.0	186	83	3	478	23	27	26	21	1.99
33638883--33639238	159	2.2	159	80	3	412	23	31	26	18	1.98
33639335--33639387	26	2.0	26	88	0	79	26	18	26	28	1.98
33639361--33640020	316	2.1	317	84	0	845	22	30	26	20	1.98
33639373--33639981	159	3.9	156	77	4	578	22	30	26	19	1.98
33640227--33640622	159	2.5	158	78	7	437	25	29	26	19	1.98
33639519--33640935	710	2.0	707	80	4	1622	23	28	27	20	1.99
33641083--33641134	26	2.0	26	85	7	70	34	17	21	26	1.95
33641581--33641632	26	2.0	26	96	0	95	25	19	28	26	1.98
33641934--33641986	26	2.0	26	92	0	88	28	18	24	28	1.98
33643098--33643152	26	2.1	26	86	6	76	34	16	20	29	1.94
33643598--33643649	26	2.0	26	96	0	95	25	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33643951--33644003	26	2.0	26	92	0	88	28	18	24	28	1.98
33644259--33644761	158	3.2	159	75	3	440	25	30	25	18	1.98
33644735--33644787	26	2.0	26	88	0	79	22	18	28	30	1.98
33645969--33646324	196	1.8	196	81	2	446	25	28	25	21	1.99
33647086--33647141	26	2.2	26	87	6	78	30	17	21	30	1.96
33647282--33647334	26	2.0	26	89	7	81	28	22	22	26	1.99
33646990--33647581	196	3.1	193	83	6	688	22	28	27	20	1.99
33648308--33648716	159	2.6	159	75	3	340	22	28	26	21	1.99
33649377--33649876	158	3.2	157	74	9	433	24	28	26	21	1.99
33649850--33649902	26	2.0	26	92	0	88	24	18	28	28	1.98
33650731--33650783	26	2.0	26	85	0	70	28	16	22	32	1.96
33651455--33651507	26	2.0	26	89	7	81	28	18	24	28	1.98
33652466--33652518	26	2.0	26	89	7	81	28	18	24	28	1.98
33652491--33652992	158	3.2	157	75	6	424	22	30	27	18	1.98
33652966--33653018	26	2.0	26	92	0	88	24	20	26	28	1.99
33653441--33653493	26	2.0	26	92	0	88	26	20	26	26	1.99
33653466--33653925	159	2.8	168	80	8	546	21	29	29	19	1.98
33652884--33654059	488	2.4	484	80	7	1273	22	29	27	19	1.98
33653955--33654007	26	2.0	26	92	0	88	24	18	28	28	1.98
33655009--33655059	26	2.0	26	84	0	66	27	19	25	27	1.99
33654850--33655185	185	1.8	185	83	1	449	21	30	27	20	1.98
33654700--33655480	344	2.3	343	80	3	874	23	29	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33655985--33656014	11	2.7	11	94	0	51	20	30	30	20	1.97
33656084--33656136	26	2.0	26	85	0	70	28	18	24	28	1.98
33656110--33656612	159	3.2	159	72	6	349	24	28	26	20	1.99
33656586--33656638	26	2.0	26	96	0	97	24	20	28	26	1.99
33656611--33656978	170	2.2	170	80	3	409	21	29	28	20	1.98
33656952--33657004	26	2.0	26	92	7	90	28	20	24	26	1.99
33656978--33657478	158	3.2	156	76	7	501	22	30	27	19	1.98
33657452--33657504	26	2.0	26	92	0	88	24	18	28	28	1.98
33657590--33657642	26	2.0	26	96	0	97	32	18	22	26	1.97
33657615--33658077	159	2.9	156	82	5	538	22	30	27	19	1.98
33658094--33658148	26	2.1	27	86	3	76	32	18	27	21	1.96
33656932--33658179	639	2.0	638	86	1	1773	23	29	27	20	1.99
33658812--33658865	26	2.0	27	89	3	83	33	20	20	25	1.97
33658838--33659247	159	2.6	160	74	3	387	28	29	24	18	1.98
33659316--33659368	26	2.0	26	88	0	79	24	18	26	30	1.98
33659494--33660024	158	3.4	159	78	5	531	23	30	27	18	1.97
33659427--33660024	317	1.9	323	81	5	753	23	30	27	18	1.97
33659684--33660923	343	3.5	341	77	8	1030	23	29	26	20	1.99
33660897--33660949	26	2.0	26	89	7	81	30	18	24	26	1.98
33660514--33661562	557	1.9	567	82	7	1360	23	28	26	21	1.99
33661466--33661518	26	2.0	26	89	7	81	32	20	20	26	1.98
33661112--33661548	191	2.3	190	82	5	511	25	27	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33661267--33661619	196	1.8	196	83	2	476	25	26	25	22	2.00
33661988--33663048	158	6.6	158	70	13	523	21	30	28	18	1.97
33661650--33662634	341	2.9	338	82	5	1062	23	30	27	19	1.98
33662328--33663101	158	4.9	156	77	5	716	21	31	28	18	1.97
33662328--33663140	317	2.6	315	84	3	1012	21	30	28	19	1.98
33663836--33663886	26	2.0	26	88	7	77	27	17	25	29	1.98
33663861--33664279	159	2.6	157	76	3	419	26	31	26	16	1.97
33664453--33664884	159	2.7	159	78	5	372	23	29	28	18	1.98
33664954--33665404	171	2.6	170	83	2	566	22	31	27	18	1.97
33664748--33665384	341	1.9	341	79	4	739	23	29	28	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402