genome.fa.s1.2.7.7.80.10.50.1000.319.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  319  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29726404--29727316	475	1.9	475	82	2	1143	23	30	26	19	1.98
29727208--29727630	184	2.3	184	84	1	544	22	29	27	20	1.99
29727538--29727590	26	2.0	26	92	0	88	22	18	28	30	1.98
29728258--29728310	26	2.0	26	92	7	90	28	16	24	30	1.97
29728892--29728941	21	2.4	21	86	0	73	4	48	24	24	1.68
29729070--29729121	26	2.0	26	85	3	70	28	21	23	26	1.99
29729582--29729634	26	2.0	26	96	0	97	24	20	28	26	1.99
29729688--29729732	22	2.0	22	91	0	72	33	17	37	11	1.85
29729800--29729852	26	2.0	26	92	0	88	24	18	28	28	1.98
29729497--29729925	218	2.0	218	92	0	725	23	25	30	19	1.98
29731412--29731445	16	2.2	16	89	5	52	20	44	20	14	1.87
29731537--29731590	26	2.1	26	86	6	74	24	22	25	27	2.00
29731309--29731866	277	2.0	277	93	0	963	26	29	25	19	1.99
29731814--29731866	26	2.0	26	89	7	81	30	20	22	26	1.98
29731839--29732868	158	6.6	156	73	8	741	23	29	27	19	1.98
29732254--29732840	314	1.9	315	82	2	741	22	30	26	20	1.98
29732890--29732943	26	2.0	27	89	3	83	24	16	27	31	1.96
29732915--29733283	170	2.2	171	79	7	385	20	29	28	21	1.98
29733257--29733309	26	2.0	26	89	7	81	28	18	24	28	1.98
29732883--29733569	354	1.9	362	78	8	758	21	28	27	21	1.99
29733282--29733669	158	2.4	158	77	4	379	22	29	28	20	1.98
29733758--29733810	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29734609--29734661	26	2.0	26	89	7	81	28	22	22	26	1.99
29734793--29734848	26	2.2	26	90	0	85	26	17	26	28	1.98
29734582--29735004	184	2.3	185	80	3	469	24	29	25	20	1.99
29734634--29735261	342	1.8	343	81	4	784	25	28	26	19	1.99
29736683--29736974	157	1.9	158	83	3	383	24	32	26	16	1.96
29736477--29737014	158	3.4	157	73	9	459	24	29	26	19	1.98
29736988--29737040	26	2.0	26	85	7	72	28	18	24	28	1.98
29737710--29737814	26	4.0	26	90	2	158	27	20	25	26	1.99
29738464--29738966	158	3.2	158	75	6	419	24	30	26	18	1.98
29738940--29738992	26	2.0	26	85	0	70	26	16	26	30	1.97
29739143--29739916	158	4.9	158	74	10	620	22	30	27	19	1.98
29739143--29739968	317	2.6	314	81	5	948	22	29	27	20	1.98
29739942--29739994	26	2.0	26	92	0	88	24	18	28	28	1.98
29740263--29740315	26	2.0	26	89	7	81	28	18	24	28	1.98
29740288--29740790	158	3.2	158	78	3	483	22	30	27	18	1.98
29747337--29747408	26	2.8	26	93	4	119	27	20	20	30	1.98
29747864--29747916	26	2.0	26	92	0	88	24	18	28	28	1.98
29748218--29748270	26	2.0	26	89	7	81	26	20	24	28	1.99
29748542--29748594	26	2.0	26	88	0	79	30	18	24	26	1.98
29749055--29749107	26	2.0	26	89	7	81	32	18	20	28	1.97
29748345--29749532	513	2.3	512	82	1	1428	23	30	26	19	1.98
29749080--29749509	159	2.7	158	76	5	409	23	32	27	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29754984--29755050	26	2.6	26	92	0	107	29	19	22	28	1.98
29755340--29755392	26	2.0	26	88	0	79	24	20	26	28	1.99
29755339--29756537	600	2.0	600	90	2	1909	26	20	22	30	1.98
29760759--29761244	159	3.1	157	82	3	582	23	30	26	19	1.98
29762539--29762575	18	2.1	18	94	0	65	21	10	43	24	1.84
29762882--29762934	26	2.0	26	89	7	81	26	15	28	30	1.96
29763261--29763312	26	2.0	26	82	14	63	28	17	26	26	1.97
29763975--29764336	184	2.0	184	85	0	499	23	27	26	21	1.99
29762566--29764564	880	2.3	875	83	3	2477	22	29	28	19	1.98
29764155--29764562	159	2.6	158	78	4	390	24	29	28	18	1.98
29764900--29764952	26	2.0	26	89	7	81	28	16	26	28	1.97
29764926--29765426	158	3.2	157	73	7	431	23	29	26	20	1.99
29765400--29765452	26	2.0	26	88	0	79	24	22	26	26	2.00
29773114--29773166	26	2.0	26	92	7	90	26	16	26	30	1.97
29773297--29773349	26	2.0	26	92	0	88	26	20	26	26	1.99
29772968--29773400	183	2.4	183	79	3	487	25	26	25	21	2.00
29773665--29773717	26	2.0	26	89	7	81	30	18	22	28	1.98
29773506--29773875	184	2.0	184	80	5	417	24	25	25	23	2.00
29773690--29774119	159	2.7	158	76	4	420	24	27	27	20	1.99
29774164--29774216	26	2.0	26	88	0	79	26	18	26	28	1.98
29774729--29774784	26	2.2	26	93	0	94	25	17	26	30	1.97
29774522--29774906	185	2.1	185	83	1	486	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29775697--29775774	26	3.0	26	86	3	104	32	19	21	26	1.97
29775748--29776177	159	2.7	158	79	3	443	24	29	28	18	1.98
29776225--29776277	26	2.0	26	89	7	81	30	20	20	28	1.98
29776592--29776644	26	2.0	26	89	7	81	30	20	22	26	1.98
29776617--29777070	159	2.9	157	73	10	422	24	31	26	17	1.97
29777106--29777158	26	2.0	26	92	7	90	28	20	24	26	1.99
29776383--29777725	514	2.6	510	82	4	1534	23	29	26	20	1.99
29775734--29777401	868	1.9	864	79	5	1891	23	29	26	20	1.99
29779290--29779341	26	2.0	25	89	10	79	28	19	25	26	1.98
29786407--29786458	26	2.0	26	92	7	88	28	19	25	26	1.98
29786748--29786799	25	2.0	26	89	10	81	26	17	26	28	1.97
29786928--29786979	25	2.0	26	92	3	88	26	21	25	26	1.99
29787288--29787339	26	2.0	25	89	10	79	30	19	23	26	1.98
29787779--29787830	26	2.0	25	88	3	77	25	19	26	28	1.98
29788332--29788386	25	2.2	26	93	3	94	25	18	27	29	1.98
29789288--29789365	26	3.0	26	86	3	104	32	19	21	26	1.97
29789339--29789778	156	2.8	154	77	9	410	23	29	27	19	1.98
29789806--29789857	25	2.0	26	85	10	72	28	21	21	28	1.98
29790164--29790216	26	2.0	26	89	7	81	30	20	22	26	1.98
29790676--29790729	27	2.1	26	89	6	83	33	20	24	22	1.97
29789961--29791291	509	2.6	502	81	6	1424	23	29	26	20	1.99
29792796--29792848	26	2.0	26	92	0	88	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29793671--29793720	25	2.0	25	92	3	84	26	16	26	32	1.96
29793833--29794336	159	3.2	156	79	4	557	21	30	27	20	1.98
29795106--29795782	318	2.1	316	83	2	829	24	30	26	18	1.98
29795103--29795879	159	4.9	157	77	3	628	23	30	27	19	1.98
29795896--29795948	26	2.0	26	88	0	79	24	15	26	33	1.95
29796577--29796627	26	2.0	26	88	0	75	27	11	29	31	1.92
29797297--29797346	26	1.9	26	92	8	84	30	18	24	28	1.97
29797797--29797849	26	2.0	26	92	0	88	26	18	28	26	1.98
29798428--29798452	11	2.3	11	100	0	50	8	32	32	28	1.86
29798556--29799215	159	4.2	160	81	4	685	23	29	27	19	1.98
29798978--29799607	343	1.8	342	85	1	886	22	30	26	20	1.98
29799532--29799583	25	2.0	26	88	3	79	26	21	23	28	1.99
29800634--29801096	157	2.9	158	77	5	353	23	28	26	20	1.99
29802850--29802900	26	2.0	26	84	7	68	25	19	25	29	1.99
29803217--29803268	25	2.0	26	89	10	81	28	15	25	30	1.96
29803241--29803658	159	2.6	158	76	7	400	24	28	27	19	1.99
29803717--29803769	26	2.0	26	86	13	74	26	16	26	30	1.97
29802249--29804908	867	3.1	864	81	5	2991	23	28	26	21	1.99
29805647--29805699	26	2.0	26	92	7	90	28	20	24	26	1.99
29805990--29806042	26	2.0	26	88	0	79	22	22	30	24	1.99
29806170--29806542	159	2.3	158	77	5	358	22	30	26	20	1.99
29806516--29806573	26	2.2	27	84	3	73	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29807008--29807537	159	3.3	158	72	7	378	23	27	26	21	1.99
29807326--29808405	354	3.1	349	74	10	967	23	28	27	20	1.99
29808218--29808270	26	2.0	26	92	7	90	26	20	26	26	1.99
29808914--29808966	26	2.0	26	85	7	72	30	16	22	30	1.96
29809296--29809346	26	2.0	26	88	3	77	31	19	23	25	1.98
29809898--29809948	26	2.0	26	88	0	75	31	15	25	27	1.96
29810641--29811301	159	4.2	159	78	6	599	23	30	26	19	1.98
29810640--29811241	317	1.9	317	86	2	850	23	30	27	18	1.98
29811277--29811327	26	2.0	26	92	0	84	25	17	29	27	1.98
29816516--29816568	26	2.0	26	92	7	90	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402