genome.fa.s1.2.7.7.80.10.50.1000.336.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  336  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30971532--30972032	158	3.2	156	77	6	499	23	31	26	18	1.97
30972006--30972058	26	2.0	26	96	0	97	24	20	28	26	1.99
30972663--30972715	26	2.0	26	89	7	81	28	18	24	28	1.98
30972689--30973297	159	3.8	159	76	5	536	24	30	26	19	1.98
30972688--30973453	318	2.4	317	81	5	842	23	29	27	19	1.98
30973481--30973533	26	2.0	26	92	0	88	24	18	28	28	1.98
30974395--30974812	159	2.6	157	74	9	384	25	29	26	17	1.98
30974201--30975476	514	2.5	507	84	3	1543	24	30	25	19	1.98
30976202--30976251	26	1.9	26	95	0	91	26	20	30	24	1.98
30976800--30976852	26	2.0	26	89	7	81	30	20	22	26	1.98
30976825--30977209	159	2.4	159	79	6	440	24	31	26	17	1.97
30977304--30977354	26	2.0	26	92	0	84	25	21	27	25	1.99
30978138--30978188	26	2.0	26	92	0	84	25	17	29	27	1.98
30978478--30978530	26	2.0	26	88	0	79	26	18	28	26	1.98
30980361--30980413	26	2.0	26	88	0	79	24	16	28	30	1.97
30981451--30981951	158	3.2	156	73	7	458	22	29	27	19	1.98
30982671--30983166	158	3.1	157	79	5	523	21	28	28	20	1.99
30983147--30983199	26	2.0	26	85	0	70	26	18	28	26	1.98
30983037--30983957	507	1.8	507	86	2	1348	22	28	28	20	1.99
30983654--30983706	26	2.0	26	92	0	88	28	18	24	28	1.98
30983986--30984036	26	2.0	26	88	0	75	27	13	29	29	1.94
30984423--30984473	26	2.0	26	92	0	84	29	17	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30984449--30985043	158	3.8	159	80	4	569	23	30	26	19	1.98
30984449--30985127	158	4.3	155	80	3	540	23	30	25	19	1.98
30984579--30985192	159	3.9	159	79	5	424	23	30	26	19	1.98
30985251--30985303	26	2.0	26	89	7	81	28	18	24	28	1.98
30985434--30985486	26	2.0	26	92	0	88	24	18	28	28	1.98
30985771--30985821	26	2.0	26	96	0	93	27	17	27	27	1.98
30986111--30986163	26	2.0	26	96	0	97	24	20	28	26	1.99
30986491--30986542	26	2.0	26	85	3	70	30	19	19	30	1.96
30986673--30986725	26	2.0	26	85	7	72	28	20	22	28	1.99
30986501--30986882	183	2.1	183	80	3	412	25	28	24	21	1.99
30987173--30987224	25	2.0	26	92	3	88	25	19	28	26	1.98
30987894--30987946	26	2.0	26	89	7	81	30	20	24	24	1.99
30987919--30988346	159	2.7	159	77	5	452	22	29	29	18	1.98
30988565--30989392	158	5.2	159	70	9	522	22	30	27	19	1.98
30988741--30989422	317	2.2	315	82	3	818	22	30	27	19	1.98
30990124--30990176	26	2.0	26	89	7	81	28	18	24	28	1.98
30990122--30990752	330	1.9	330	86	3	903	24	28	27	19	1.98
30990848--30991363	158	3.3	156	76	8	441	24	29	25	19	1.99
30991005--30991423	158	2.6	158	78	4	425	25	29	27	17	1.97
30992019--30992071	26	2.0	26	92	7	90	28	20	24	26	1.99
30992045--30992546	158	3.2	157	75	6	483	23	30	27	18	1.98
30992520--30992572	26	2.0	26	88	0	79	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993244--30993308	26	2.5	26	85	12	96	29	20	26	24	1.99
30993244--30993322	26	3.0	26	80	10	90	29	20	24	26	1.99
30993638--30993690	26	2.0	26	92	0	88	30	18	20	30	1.97
30993664--30994239	159	3.6	157	77	4	532	23	28	27	19	1.98
30995376--30995428	26	2.0	26	88	0	79	24	20	28	26	1.99
30996456--30996508	26	2.0	26	82	13	65	30	16	22	30	1.96
30996617--30997009	170	2.3	172	81	3	427	22	32	26	18	1.97
30996983--30997035	26	2.0	26	82	7	63	32	20	22	24	1.98
30996122--30997288	527	2.2	527	87	2	1676	23	31	26	18	1.97
30996640--30997418	355	2.2	347	81	8	847	22	31	27	18	1.97
30997955--30997998	22	2.0	22	86	0	61	18	34	27	20	1.96
30998988--30999040	26	2.0	26	89	7	81	28	18	24	28	1.98
30999488--30999540	26	2.0	26	89	7	81	30	20	22	26	1.98
31000434--31000777	159	2.2	159	80	4	372	23	29	27	19	1.98
31002140--31002190	26	2.0	26	92	7	86	29	19	23	27	1.98
31003096--31003440	159	2.2	159	81	3	401	24	29	26	20	1.99
31003414--31003466	26	2.0	26	85	0	70	26	16	26	30	1.97
31003571--31003623	26	2.0	26	85	7	72	30	18	22	28	1.98
31003570--31003964	185	2.1	183	85	5	521	24	27	26	22	2.00
31004470--31004522	26	2.0	26	89	7	81	28	22	22	26	1.99
31004469--31004815	185	1.9	185	80	7	418	24	26	26	22	2.00
31005022--31005527	158	3.2	157	77	6	482	21	30	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31006219--31006271	26	2.0	26	92	7	90	24	20	28	26	1.99
31006719--31006771	26	2.0	26	92	7	90	30	20	22	26	1.98
31007414--31007466	26	2.0	26	85	7	72	24	16	30	28	1.97
31012712--31012762	26	2.0	26	84	0	66	29	17	23	29	1.97
31013092--31013144	26	2.0	26	89	7	81	30	20	22	26	1.98
31013437--31013500	26	2.5	26	78	9	62	37	20	17	25	1.93
31012922--31013665	352	2.1	352	81	4	836	26	28	23	21	1.99
31013469--31013877	159	2.6	158	76	5	394	25	30	25	18	1.98
31013944--31013996	26	2.0	26	85	0	70	28	18	26	26	1.98
31015638--31015713	26	2.9	26	94	0	125	27	15	26	30	1.96
31015829--31016416	159	3.8	157	77	6	554	24	28	26	21	1.99
31017116--31017166	26	2.0	26	84	7	68	29	15	25	29	1.96
31017460--31017512	26	2.0	26	92	7	90	30	20	22	26	1.98
31017754--31017806	26	2.0	26	96	0	97	24	20	28	26	1.99
31018440--31018494	26	2.1	26	90	6	85	27	20	25	27	1.99
31018651--31018703	26	2.0	26	89	7	81	30	22	20	26	1.98
31018035--31019413	496	2.7	513	86	6	1996	24	28	26	20	1.99
31018936--31018990	26	2.1	26	86	6	76	27	18	25	29	1.98
31019147--31019199	26	2.0	26	92	7	90	32	20	20	26	1.98
31019173--31019674	158	3.2	157	74	5	436	24	30	25	19	1.98
31019172--31019618	159	2.8	158	76	5	409	24	30	26	18	1.98
31019642--31019700	26	2.3	26	82	5	77	27	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31019489--31020043	184	3.0	182	81	4	623	24	29	26	20	1.99
31021309--31021361	26	2.0	26	92	7	90	28	20	24	26	1.99
31021487--31021774	160	1.8	158	80	5	348	25	29	25	19	1.98
31021335--31021830	158	3.2	156	72	10	415	24	29	26	20	1.99
31022302--31022694	158	2.5	157	76	4	412	23	30	24	20	1.99
31023401--31023453	26	2.0	26	82	7	63	28	18	24	28	1.98
31023745--31023796	25	2.0	26	92	3	88	25	15	28	30	1.96
31025247--31025299	26	2.0	26	89	7	81	30	20	22	26	1.98
31025273--31025773	159	3.2	158	77	5	512	22	29	27	20	1.99
31025756--31025851	26	3.7	26	85	2	122	26	18	28	27	1.98
31025756--31025854	52	1.9	52	85	4	137	26	19	27	27	1.99
31025831--31026273	159	2.8	159	79	6	506	22	31	28	18	1.97
31026300--31026352	26	2.0	26	85	7	72	24	15	28	32	1.95
31027022--31027074	26	2.0	26	92	7	90	28	20	24	26	1.99
31027047--31027635	158	3.7	158	78	2	410	23	30	27	17	1.97
31027047--31027708	159	4.2	158	76	4	569	23	29	27	19	1.98
31027682--31027734	26	2.0	26	88	0	79	24	16	28	30	1.97
31027720--31028075	171	2.1	171	81	4	398	24	29	24	22	1.99
31028049--31028101	26	2.0	26	96	0	97	30	18	22	28	1.98
31027680--31028358	367	1.9	367	80	4	805	24	28	26	20	1.99
31028243--31028740	159	3.1	158	79	8	489	23	29	26	20	1.99
31035869--31035921	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31036930--31036982	26	2.0	26	82	7	63	32	16	22	28	1.96
31036408--31037065	355	1.9	352	81	2	818	25	27	26	20	1.99
31037126--31037178	26	2.0	26	85	7	72	28	20	22	28	1.99
31037336--31038811	159	9.2	159	74	9	969	22	30	26	20	1.98
31039500--31039552	26	2.0	26	89	7	81	30	20	22	26	1.98
31039684--31039736	26	2.0	26	85	0	70	30	20	22	26	1.98
31040051--31040103	26	2.0	26	89	7	81	30	18	24	26	1.98
31039892--31040262	184	2.0	185	83	2	469	23	29	27	20	1.99
31040086--31040578	159	3.1	159	76	4	404	21	31	28	18	1.97
31040552--31040604	26	2.0	26	88	0	79	26	18	28	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402