genome.fa.s1.2.7.7.80.10.50.1000.395.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36299135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402   

This is table  395  of  402  ( 48166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35726634--35727129	158	3.1	157	76	6	421	20	27	29	22	1.99
35727101--35727153	26	2.0	26	89	7	81	28	24	18	28	1.98
35727297--35727349	26	2.0	26	88	0	79	30	28	16	24	1.97
35725878--35727666	696	2.6	692	83	2	2194	20	26	29	24	1.99
35727640--35727692	26	2.0	26	92	7	90	26	24	20	28	1.99
35728080--35728419	158	2.1	159	80	3	364	20	26	29	24	1.99
35728576--35728628	26	2.0	26	88	0	79	28	26	20	24	1.99
35728930--35728982	26	2.0	26	92	0	88	26	26	18	28	1.98
35728233--35729893	721	2.3	720	82	3	1948	20	26	29	23	1.99
35729664--35729714	26	2.0	26	88	0	75	29	29	13	27	1.94
35728236--35729905	367	4.6	366	80	3	1731	20	26	29	23	1.99
35729690--35730190	158	3.2	157	74	6	454	20	27	28	23	1.99
35730164--35730216	26	2.0	26	89	7	81	26	24	22	26	2.00
35730884--35730936	26	2.0	26	92	0	88	26	26	20	26	1.99
35730910--35731273	159	2.3	158	76	7	360	21	25	29	23	1.99
35731752--35731804	26	2.0	26	89	7	81	30	26	18	24	1.98
35732253--35732305	26	2.0	26	89	7	81	26	22	20	30	1.98
35733117--35733169	26	2.0	26	85	7	72	26	22	18	32	1.97
35733850--35733902	26	2.0	26	88	0	79	30	28	16	24	1.97
35734339--35734390	26	2.0	26	88	7	79	26	25	17	30	1.97
35734829--35735335	159	3.2	158	80	1	460	18	28	30	22	1.98
35735397--35735468	26	2.8	26	84	0	99	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35735916--35735968	26	2.0	26	89	7	81	28	22	18	30	1.98
35736670--35737154	158	3.1	157	77	5	499	19	27	30	23	1.98
35737505--35737556	25	2.0	26	88	3	79	28	25	19	26	1.98
35737041--35737873	354	2.3	355	82	8	973	19	26	30	23	1.98
35737663--35738032	159	2.3	159	76	3	368	19	25	28	25	1.99
35738006--35738058	26	2.0	26	89	7	81	26	26	18	28	1.98
35739013--35739065	26	2.0	26	89	7	81	26	22	20	30	1.98
35739809--35740103	159	1.9	160	81	5	364	18	25	31	24	1.97
35740089--35740141	26	2.0	26	88	0	79	33	28	13	24	1.93
35739964--35740300	184	1.8	185	82	5	432	21	27	29	22	1.99
35739669--35740802	343	3.3	343	83	3	1239	19	26	29	23	1.98
35740432--35740484	26	2.0	26	96	0	97	30	28	16	24	1.97
35740252--35741798	502	3.1	499	83	4	1883	20	26	29	24	1.99
35740592--35740938	159	2.2	157	81	3	383	19	26	29	23	1.99
35740934--35740986	26	2.0	26	88	0	79	33	28	13	24	1.93
35741108--35741398	159	1.8	159	81	1	359	19	24	30	24	1.98
35741436--35741488	26	2.0	26	88	0	79	30	28	16	24	1.97
35741771--35741823	26	2.0	26	82	7	63	28	26	18	26	1.98
35741864--35742214	158	2.2	158	83	3	420	17	28	31	22	1.96
35744306--35744358	26	2.0	26	85	7	72	30	24	16	28	1.97
35745066--35745118	26	2.0	26	85	7	72	28	24	18	28	1.98
35744284--35745321	380	2.7	380	82	2	1242	21	25	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35745407--35745766	170	2.2	162	80	8	365	19	24	29	26	1.98
35745475--35745846	170	2.2	170	79	5	403	19	25	31	23	1.98
35744712--35746341	867	1.9	860	81	4	1951	21	25	29	24	1.99
35746458--35746510	26	2.0	26	96	0	97	26	28	20	24	1.99
35746656--35746705	26	1.9	26	88	8	75	24	24	24	28	2.00
35747374--35747426	26	2.0	26	92	0	88	28	28	16	26	1.97
35747864--35748293	195	2.2	195	89	2	648	22	26	27	23	1.99
35748537--35748839	159	1.9	158	79	8	339	18	25	31	24	1.97
35748951--35749003	26	2.0	26	92	7	90	26	24	20	28	1.99
35749673--35749725	26	2.0	26	96	0	97	26	28	20	24	1.99
35749739--35750202	159	2.9	159	79	4	481	18	28	31	21	1.97
35749699--35750200	158	3.2	156	77	7	521	19	27	30	22	1.98
35750023--35750385	184	2.0	184	86	3	507	19	27	30	22	1.98
35750542--35750594	26	2.0	26	92	0	88	26	22	20	30	1.98
35750565--35751072	159	3.2	159	79	3	490	19	27	28	24	1.99
35751044--35751096	26	2.0	26	88	0	79	28	22	18	30	1.98
35750501--35751798	699	1.9	699	82	0	1675	20	25	29	24	1.99
35751743--35751795	26	2.0	26	89	7	81	26	20	20	32	1.98
35751914--35751952	16	2.4	16	100	0	78	17	15	41	25	1.89
35752466--35753202	342	2.2	343	83	3	932	21	26	27	24	1.99
35754674--35755246	157	3.6	157	78	9	413	18	28	29	24	1.98
35754587--35755245	158	4.2	159	76	8	580	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35755219--35755271	26	2.0	26	89	7	81	28	20	18	32	1.97
35758430--35758482	26	2.0	26	88	0	79	28	20	24	26	1.99
35759161--35759212	25	2.0	26	89	10	81	30	21	21	26	1.98
35759185--35759624	159	2.8	155	76	5	407	24	29	27	18	1.98
35761593--35761645	26	2.0	26	92	0	88	24	18	28	28	1.98
35762315--35762367	26	2.0	26	82	7	63	28	18	24	28	1.98
35762655--35762705	26	2.0	26	92	0	84	31	21	21	25	1.98
35763031--35763083	26	2.0	26	89	7	81	28	18	24	28	1.98
35763056--35763484	159	2.7	156	75	6	382	24	29	26	19	1.98
35764253--35764746	158	3.1	158	77	5	469	24	31	26	18	1.97
35764728--35764780	26	2.0	26	88	0	79	24	18	26	30	1.98
35764887--35765228	158	2.2	157	82	3	409	22	30	27	19	1.98
35765243--35765295	26	2.0	26	96	0	97	28	20	24	26	1.99
35765992--35766345	157	2.2	157	77	4	372	26	31	23	18	1.97
35765992--35766409	158	2.7	157	76	5	423	26	29	25	17	1.98
35767180--35767232	26	2.0	26	89	7	81	30	20	22	26	1.98
35767876--35767928	26	2.0	26	92	7	90	30	20	22	26	1.98
35766769--35768150	696	2.0	691	86	4	1951	28	25	23	22	2.00
35767901--35768403	158	3.2	158	79	3	537	24	31	26	17	1.97
35768377--35768428	25	2.0	26	96	3	97	25	21	26	26	1.99
35768060--35768806	342	2.2	341	84	4	941	24	30	25	19	1.98
35768719--35768770	26	2.0	25	85	3	68	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35769085--35769137	26	2.0	26	85	0	70	22	16	28	32	1.96
35780323--35780706	159	2.4	158	73	7	348	23	28	25	22	1.99
35780680--35780735	26	2.2	26	93	0	94	25	14	26	33	1.94
35781753--35781805	26	2.0	26	85	7	72	28	16	24	30	1.97
35782518--35783078	159	3.6	156	76	6	513	24	30	26	18	1.98
35783674--35783726	26	2.0	26	92	7	90	26	16	26	30	1.97
35783945--35784388	158	2.8	156	73	7	398	25	31	24	18	1.97
35783838--35784515	316	2.1	316	81	4	780	25	30	24	20	1.98
35784490--35784540	25	2.0	25	92	0	84	25	19	25	29	1.99
35785213--35785265	26	2.0	26	92	7	90	28	20	24	26	1.99
35785713--35785765	26	2.0	26	88	0	79	26	18	26	28	1.98
35785883--35786326	159	2.8	156	74	7	419	24	29	26	19	1.99
35787109--35787161	26	2.0	26	89	7	81	28	18	24	28	1.98
35788351--35788853	158	3.2	157	78	5	503	23	30	26	20	1.98
35789218--35789717	159	3.2	158	79	4	499	23	30	27	18	1.98
35789693--35789743	26	2.0	26	92	0	84	25	13	31	29	1.94
35788995--35789988	500	1.9	506	79	7	1087	22	28	28	20	1.98
35788324--35790637	866	2.7	864	83	2	2798	23	28	27	20	1.99
35790059--35790111	26	2.0	26	82	13	65	30	18	22	28	1.98
35790561--35790613	26	2.0	26	85	0	70	30	16	22	30	1.96
35791441--35791493	26	2.0	26	92	0	88	24	18	28	28	1.98
35791821--35792323	158	3.2	158	78	4	460	24	29	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35792297--35792349	26	2.0	26	92	0	88	28	18	24	28	1.98
35793029--35793081	26	2.0	26	96	0	97	26	20	24	28	1.99
35793529--35793581	26	2.0	26	92	7	90	26	20	26	26	1.99
35793935--35795092	159	7.2	157	71	10	575	23	28	27	20	1.99
35795066--35795118	26	2.0	26	89	7	81	28	20	24	26	1.99
35795736--35795788	26	2.0	26	88	0	79	24	18	26	30	1.98
35795222--35796066	367	2.4	355	80	6	864	24	29	26	19	1.99
35796261--35796313	26	2.0	26	89	7	81	24	20	26	28	1.99
35797180--35797400	121	1.8	121	83	5	295	26	29	27	16	1.97
35797022--35797537	279	1.8	279	83	0	683	25	29	26	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   379   380   381   382   383   384   
          385   386   387   388   389   390   391   392   393   394   395   396   397   398   399   400   
          401   402